Fold Assignments with Multiple-Sequence Methods (PSI-blast and FASTA) and a recent version of the PDB (scop 1.35)

• Directory of brand new worm to PDB matches, based on a careful running of PSI-blast. (This will perhaps be more comprehensive than other match sets.) In particular, this contains a table of all PDB matches and just small protein PDB matches
  
• Figures from the paper, showing key fold statistics
  • Venn diagram
    
  • Worm Only Folds
    
  • Top 10 Worm Folds
    
  • The Most Frequent Domain Combinations
    
  • Commonly Recombined Worm Folds
    

Earlier Analysis Based on Only Pairwise Comparison

• Tab-delimited database table [txt]
• Formatted table [pdf, html]
• Metazoan-only folds
• Venn Diagram showing the sharing of folds between worm, yeast, and E. coli [pdf, gif]