Table 2, Statistics over 42 structure-function classes

This table shows various totals from Figure 2 distributed among the 42 structure-function classes -- i.e. the seven functional categories in Table 1A multiplied by the six structural categories in Table 1B. Part A shows how many potential fold-function combinations there are in Figure 2 amongst each of the 42 classes. Part B shows how many of these 21068 possible combinations are actually observed. Part C shows the total number of different folds (i.e. selected columns in figure 1) in each class. Part D shows the total number of different functions (i.e. selected rows in Figure 2) in each class. Part E shows the total number of matching Swissprot proteins in the 42 classes. Note that to observe a fold-function combination one only needs the existence of a single match between a Swissprot protein and a SCOP domain. However, there can be many more. That is why the totals in table sum up to so much larger an amount than 331.



Here is an example of how to read the table, focussing on the all-alpha, oxidoreductase region. Part A shows that there are 1104 cells, filled or unfilled, in this region, corresponding to possible combinations. Part B shows that 13 of these 1104 cells are filled, corresponding to observed all-alpha, oxidoreductase combinations. Part C shows that there are 7 folds, corresponding to columns with filled cells in this region. Part D shows that there are 8 functions, corresponding to rows with filled cells in this region. Finally, in Part E we find that there are 150 Swissprot entries that have matches with a SCOP domain. They correspond to the 13 observed combinations in Part B.




A. Number of possible combinations between folds and functions in each of 42 classes (number of cells in Figure 2)

A

B

A/B

A+B

MULTI

SML

sum

NONENZ

46

36

48

56

15

28

229

OX

1104

864

1152

1344

360

672

5496

TRAN

598

468

624

728

195

364

2977

HYD

1334

1044

1392

1624

435

812

6641

LY

414

324

432

504

135

252

2061

ISO

460

360

480

560

150

280

2290

LIG

276

216

288

336

90

168

1374

sum

4232

3312

4416

5152

1380

2576

21068



B. Number of observed combinations between folds and functions in each of 42 classes (number of filled cells in Figure 2)

A

B

A/B

A+B

MULTI

SML

sum

NONENZ

34

30

14

28

4

26

136

OX

13

5

17

3

4

5

47

TRAN

3

3

16

8

5

35

HYD

4

11

30

18

4

67

LY

2

3

13

5

23

ISO

1

2

7

4

2

16

LIG

1

2

3

1

7

sum

57

55

99

69

20

31

331

 

C. Number of folds in each of the 42 classes (columns with a filled cell in Figure 2)

 

A

B

A/B

A+B

MULTI

SML

sum

NONENZ

34

30

14

28

4

26

136

OX

7

5

9

3

3

3

30

TRAN

3

2

15

6

5

31

HYD

4

8

19

18

3

52

LY

2

3

8

5

18

ISO

1

2

7

4

2

16

LIG

1

1

3

1

6

sum

51

51

73

67

18

29

289

 

D. Number of functions in each of the 42 classes (rows with a filled cell in Figure 2)

 

A

B

A/B

A+B

MULTI

SML

sum

NONENZ

1

1

1

1

1

1

6

OX

8

5

9

3

3

5

33

TRAN

2

3

13

8

4

30

HYD

4

7

19

14

4

48

LY

2

2

7

3

14

ISO

1

2

5

4

1

13

LIG

1

2

2

1

6

sum

18

21

56

35

14

6

150

 

E. Total number of matching Swissprot sequences in each of the 42 fold-function classes

 

A

B

A/B

A+B

MULTI

SML

sum

NONENZ

1940

1159

560

638

106

892

5295

OX

150

202

388

50

68

18

876

TRAN

65

14

363

116

174

732

HYD

116

394

295

452

92

1349

LY

40

47

168

104

359

ISO

2

54

122

22

2

202

LIG

5

26

69

24

124

sum

2313

1875

1922

1451

466

910

8937



© 1998 Hedi Hegyi & Mark Gerstein
© 1998 Graphics - Jimmy Lin