Supplementary Material

Databases of transmembrane domains
Complete database
All TRANSMEM annotations in Swiss-Prot rel. 37
46,946 TM records
File name: sprot37.tma
File type: text file, tab separated
Homology-purged database
TRANSMEM (TM) annotations in Swiss-Prot rel. 37, derived from sprot37.tma after homology removal
13,606 TM records
File name: sprot37_hc.tma
File type: text file, tab separated
Output files
Results of pair analysis
Complete table, 4,000 pairs
File name: pairs.dat
File type: text file, tab separated
Results of triplet analysis
Complete table, 200,000 triplets
File name: triplets.dat
File type: text file, tab separated
Supplementary figures
Comparison of observed odds ratios of pairs formed by similar residues
File name: supplementary_figures.pdf
File type: Adobe Acrobat PDF
Figure S1: combinations of small residues
Figure S2: combinations of a small and a large aliphatic residues
Figure S3: combinations of a large and a small aliphatic residues
Figure S4: combinations of large residues
Figure S5: combinations of proline with I/V/L/G/A/S/F/Y/P
Figure S6: combinations of I/V/L/G/A/S/F/Y/P with proline





Senes et al. (2000) J Mol Biol, 296, 921-36, Copyright notice