GeneCensus Updated Analysis, 1999,01.01

This page provides updated data on the comparative analysis of genomes in terms of protein structures. It is part of an overall effort on large-scale, structural censuses of the sequence databanks and functions as supplementary material to materials currently under review.

1. Focus on the Updated TM Analysis

• Overview of the new masking methods
• Page describing the rationale for these methods
• List of all the updated TM helix files
• Formatted Tables of the Sure and Tricky Membrane Protein in MG

2. Specific analysis tables for each genome

Click on an abbreviation name for a list of local tables pertinent to each genome. These tables make extensive use of the idea of "masking" various regions of the genome.

Abbrev.	Genome	Size (Mb)	Reference			Website URL (http://…)
CE	Caenorhabditis elegans	97	Consortium, Science 282:2012-2018 (1998)			www.sanger.ac.uk/Projects/C_elegans
CE-wp16	Caenorhabditis elegans (just wormpep-16)	97	Consortium, Science 282:2012-2018 (1998)			www.sanger.ac.uk/Projects/C_elegans
SC	Saccharomyces cerevisiae	13	Goffeau et. al., Nature 387 (Suppl.) 5-105 (1997)			genome-www.stanford.edu/ Saccharomyces
MG	Mycoplasma genitalium	0.58	Fraser et. al., Science 270:397-403 (1995)			www.tigr.org/tdb/mdb/mgdb/mgdb.html
EC	Escherichia coli	4.60	Blattner et. al., Science 277:1453-1462 (1997)			www.genetics.wisc.edu

3. Help and Information Documents

This gives a description of the specific methods used in the calculation.

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