The updated TM files file this convention.
| seq.fa | the raw sequence file |
| tm_segs.txt | all the TM segments |
| tm_segs_best.txt | the best TM segments |
| tm_scores.txt | the distribution of membrane protein scores (minhall) |
| seq_MBY_pdb_MBY_tmb_MBY_sig_MBY_lcl_MBY_tms.fa | the raw sequence masked by TM segments and some low-complexity regions |
| *.hdr | Header files for all the database files above are available |
| http://bioinfo.mbb.yale.edu/genome/new/db/XX | Root URL, where XX is a genome name |
http://bioinfo.mbb.yale.edu/genome/new/db/CE/seq.fa http://bioinfo.mbb.yale.edu/genome/new/db/CE/seq.hdr http://bioinfo.mbb.yale.edu/genome/new/db/CE/tm_segs.txt http://bioinfo.mbb.yale.edu/genome/new/db/CE/tm_segs.hdr http://bioinfo.mbb.yale.edu/genome/new/db/CE/tm_segs_best.txt http://bioinfo.mbb.yale.edu/genome/new/db/CE/tm_segs_best.hdr http://bioinfo.mbb.yale.edu/genome/new/db/CE/tm_scores.txt http://bioinfo.mbb.yale.edu/genome/new/db/CE/tm_scores.hdr http://bioinfo.mbb.yale.edu/genome/new/db/CE/seq_MBY_pdb_MBY_tmb_MBY_sig_MBY_lcl_MBY_tms.fa http://bioinfo.mbb.yale.edu/genome/new/db/CE/seq_MBY_pdb_MBY_tmb_MBY_sig_MBY_lcl_MBY_tms.hdr http://bioinfo.mbb.yale.edu/genome/new/db/SC/seq.fa http://bioinfo.mbb.yale.edu/genome/new/db/SC/seq.hdr http://bioinfo.mbb.yale.edu/genome/new/db/SC/tm_segs.txt http://bioinfo.mbb.yale.edu/genome/new/db/SC/tm_segs.hdr http://bioinfo.mbb.yale.edu/genome/new/db/SC/tm_segs_best.txt http://bioinfo.mbb.yale.edu/genome/new/db/SC/tm_segs_best.hdr http://bioinfo.mbb.yale.edu/genome/new/db/SC/tm_scores.txt http://bioinfo.mbb.yale.edu/genome/new/db/SC/tm_scores.hdr http://bioinfo.mbb.yale.edu/genome/new/db/SC/seq_MBY_pdb_MBY_tmb_MBY_sig_MBY_lcl_MBY_tms.fa http://bioinfo.mbb.yale.edu/genome/new/db/SC/seq_MBY_pdb_MBY_tmb_MBY_sig_MBY_lcl_MBY_tms.hdr http://bioinfo.mbb.yale.edu/genome/new/db/EC/seq.fa http://bioinfo.mbb.yale.edu/genome/new/db/EC/seq.hdr http://bioinfo.mbb.yale.edu/genome/new/db/EC/tm_segs.txt http://bioinfo.mbb.yale.edu/genome/new/db/EC/tm_segs.hdr http://bioinfo.mbb.yale.edu/genome/new/db/EC/tm_segs_best.txt http://bioinfo.mbb.yale.edu/genome/new/db/EC/tm_segs_best.hdr http://bioinfo.mbb.yale.edu/genome/new/db/EC/tm_scores.txt http://bioinfo.mbb.yale.edu/genome/new/db/EC/tm_scores.hdr http://bioinfo.mbb.yale.edu/genome/new/db/EC/seq_MBY_pdb_MBY_tmb_MBY_sig_MBY_lcl_MBY_tms.fa http://bioinfo.mbb.yale.edu/genome/new/db/EC/seq_MBY_pdb_MBY_tmb_MBY_sig_MBY_lcl_MBY_tms.hdr http://bioinfo.mbb.yale.edu/genome/new/db/MG/seq.fa http://bioinfo.mbb.yale.edu/genome/new/db/MG/seq.hdr http://bioinfo.mbb.yale.edu/genome/new/db/MG/tm_segs.txt http://bioinfo.mbb.yale.edu/genome/new/db/MG/tm_segs.hdr http://bioinfo.mbb.yale.edu/genome/new/db/MG/tm_segs_best.txt http://bioinfo.mbb.yale.edu/genome/new/db/MG/tm_segs_best.hdr http://bioinfo.mbb.yale.edu/genome/new/db/MG/tm_scores.txt http://bioinfo.mbb.yale.edu/genome/new/db/MG/tm_scores.hdr