### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ) ( ) ### which is being interpreted by perl5 at Fri Nov 27 22:57:14 EST 1998 ### with pid 4652 on oin. ### .........................................................................., ##_ value 0 id ##_ value 1 sig ##_ value 2 maxhall ##_ value 3 ntmproc ##_ value 4 totaa ##_ value 5 avg_en ##_ value 6 maxhseg ### .........................................................................., This table contains the scores determining whether to what degree the sequences is an integral membrane protein. ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ) ( ) ### which is being interpreted by perl5 at Fri Nov 27 22:58:23 EST 1998 ### with pid 4669 on oin. ### .........................................................................., ##_ value 0 id ##_ value 1 sig ##_ value 2 maxhall ##_ value 3 ntmproc ##_ value 4 totaa ##_ value 5 avg_en ##_ value 6 maxhseg ### .........................................................................., This table contains the scores determining whether to what degree the sequences is an integral membrane protein. ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Fri Nov 27 23:12:02 EST 1998 ### with pid 4719 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sig ##_ value 2 maxhall ##_ value 3 ntmproc ##_ value 4 totaa ##_ value 5 avg_en ##_ value 6 maxhseg ### .........................................................................., This table contains the scores determining whether to what degree the sequences is an integral membrane protein. ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Fri Nov 27 23:17:32 EST 1998 ### with pid 4745 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sig ##_ value 2 minhall ##_ value 3 ntmproc ##_ value 4 totaa ##_ value 5 avg_en ##_ value 6 minhseg ### .........................................................................., This table contains the scores determining whether to what degree the sequences is an integral membrane protein. ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Fri Nov 27 23:23:01 EST 1998 ### with pid 4774 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sig ##_ value 2 minhall ##_ value 3 ntmproc ##_ value 4 totaa ##_ value 5 avg_en ##_ value 6 minhseg ### .........................................................................., This table contains the scores determining whether to what degree the sequences is an integral membrane protein. ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sat Nov 28 00:43:08 EST 1998 ### with pid 5029 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sat Nov 28 00:55:45 EST 1998 ### with pid 5139 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 03:13:15 EST 1998 ### with pid 11168 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 04:36:48 EST 1998 ### with pid 11694 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 04:42:38 EST 1998 ### with pid 11840 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 04:48:26 EST 1998 ### with pid 11986 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 04:54:12 EST 1998 ### with pid 12134 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:00:01 EST 1998 ### with pid 12355 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:05:50 EST 1998 ### with pid 12503 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:11:38 EST 1998 ### with pid 12651 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:17:24 EST 1998 ### with pid 12799 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:23:09 EST 1998 ### with pid 12947 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:28:58 EST 1998 ### with pid 13093 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:34:44 EST 1998 ### with pid 13241 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:40:30 EST 1998 ### with pid 13389 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:46:20 EST 1998 ### with pid 13537 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:52:10 EST 1998 ### with pid 13685 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 05:58:00 EST 1998 ### with pid 13906 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:03:48 EST 1998 ### with pid 14054 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:09:40 EST 1998 ### with pid 14202 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:15:27 EST 1998 ### with pid 14350 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:21:15 EST 1998 ### with pid 14498 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:27:01 EST 1998 ### with pid 14644 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:32:49 EST 1998 ### with pid 14792 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:38:33 EST 1998 ### with pid 14940 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:44:26 EST 1998 ### with pid 15088 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:50:15 EST 1998 ### with pid 15236 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 06:56:06 EST 1998 ### with pid 15463 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### Table tm_scores ### ~~~~~ ### associated with file ./db/MG/tm_scores.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl5 at Sun Nov 29 07:01:57 EST 1998 ### with pid 15609 on oin. ### .........................................................................., ##_ key 0 id_ ##_ value 1 sumscr ##_ value 2 sig ##_ value 3 minhall ##_ value 4 ntmproc ##_ value 5 totaa ##_ value 6 avg_en ##_ value 7 minhseg ### .........................................................................., This table contains scores determining whether to what degree the sequences is an integral membrane protein. sig = does it have a signal sequence? sumscor = overall evaluation score (see below) minhall = min hydrophobicity value for 20 res. window moved over whole prot. totaa = total number of aa under -1 threshold ntmproc = tot num of TM helices after processing avg_en = average hydrophobicity of all the TM segments (per residue) minhseg = min hydrophobicity of a TM segments (per residue) # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ...........................................................................