### Table tm_segs ### ~~~~~ ### associated with file ./db/EC/tm_segs.txt. ### has delimiter / / ### generated by script find-tm-segs.pl, ### has key fields ( ,id_,start_I ) ( ,0,1 ) ### which is being interpreted by perl5 at Sun Oct 26 08:37:03 EST 1997 ### with pid 9852 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ key 1 start_I ##_ value 2 stop_n ### .........................................................................., Transmembrane segments. ### ........................................................................... ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Sun Oct 26 10:38:39 EST 1997 ### with pid 13116 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Sun Oct 26 10:40:29 EST 1997 ### with pid 13116 on nj.csb.yale.edu. ### .........................................................................., ### Table tm_segs ### ~~~~~ ### associated with file ./db/EC/tm_segs.txt. ### has delimiter / / ### generated by script find-tm-segs.pl, ### has key fields ( ,id_,start_I ) ( ,0,1 ) ### which is being interpreted by perl5 at Mon Oct 27 01:50:02 EST 1997 ### with pid 3188 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ key 1 start_I ##_ value 2 stop_n ### .........................................................................., Transmembrane segments. ### ........................................................................... ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Mon Oct 27 01:57:07 EST 1997 ### with pid 3231 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Mon Oct 27 01:59:23 EST 1997 ### with pid 3231 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-make-summary.pl, ### which is being interpreted by perl at Mon Oct 27 12:59:31 EST 1997 ### with pid 9647 on balin.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Fri Oct 31 00:19:40 EST 1997 ### with pid 2580 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Fri Oct 31 00:21:56 EST 1997 ### with pid 2580 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-make-summary.pl, ### which is being interpreted by perl at Fri Oct 31 00:27:15 EST 1997 ### with pid 2753 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Sun Nov 2 16:53:10 EST 1997 ### with pid 7096 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Sun Nov 2 16:55:28 EST 1997 ### with pid 7096 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-make-summary.pl, ### which is being interpreted by perl at Sun Nov 2 17:35:11 EST 1997 ### with pid 7692 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script histo-tm-seg-lens.pl, ### which is being interpreted by perl at Thu Nov 13 16:14:13 EST 1997 ### with pid 27371 on balin.csb.yale.edu. ### .........................................................................., ### Table tm_segs ### ~~~~~ ### associated with file ./db/EC/tm_segs.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_,start_I ) ( ,0,1 ) ### which is being interpreted by perl5 at Thu Nov 13 17:37:56 EST 1997 ### with pid 27873 on balin.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ key 1 start_I ##_ value 2 stop_n ##_ value 3 energy_f ### .........................................................................., Transmembrane segments. (version 2, revised 971113) ### ........................................................................... ### Table tm_segs ### ~~~~~ ### associated with file ./db/EC/tm_segs.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_,start_I ) ( ,0,1 ) ### which is being interpreted by perl5 at Thu Nov 13 17:49:14 EST 1997 ### with pid 28141 on balin.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ key 1 start_I ##_ value 2 stop_n ##_ value 3 energy_f ### .........................................................................., Transmembrane segments. (version 2, revised 971113) ### ........................................................................... ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-make-summary.pl, ### which is being interpreted by perl at Thu Nov 13 17:54:13 EST 1997 ### with pid 28169 on balin.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script histo-tm-seg-lens.pl, ### which is being interpreted by perl at Thu Nov 13 19:50:08 EST 1997 ### with pid 28664 on balin.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-make-summary.pl, ### which is being interpreted by perl at Sat Nov 15 15:16:41 EST 1997 ### with pid 17378 on nj.csb.yale.edu. ### .........................................................................., ### Table tm_segs ### ~~~~~ ### associated with file ./db/EC/tm_segs.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_,start_I ) ( ,0,1 ) ### which is being interpreted by perl5 at Fri Jan 2 03:06:57 EST 1998 ### with pid 20522 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ key 1 start_I ##_ value 2 stop_n ##_ value 3 energy_f ### .........................................................................., Transmembrane segments. (version 2, revised 971113) ### ........................................................................... ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-make-summary.pl, ### which is being interpreted by perl at Fri Jan 2 04:35:57 EST 1998 ### with pid 21829 on nj.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-make-summary.pl, ### which is being interpreted by perl at Fri Jan 2 04:59:57 EST 1998 ### with pid 22635 on nj.csb.yale.edu. ### .........................................................................., ### Table tm_segs ### ~~~~~ ### associated with file ./db/EC/tm_segs.txt. ### has delimiter / / ### generated by script i-find-tm-segs.pl, ### has key fields ( ,id_,start_I ) ( ,0,1 ) ### which is being interpreted by perl5 at Sat Nov 28 15:47:16 EST 1998 ### with pid 8389 on oin. ### .........................................................................., ##_ key 0 id_ ##_ key 1 start_I ##_ value 2 stop_n ##_ value 3 sumscor ##_ value 4 energy_f ### .........................................................................., Transmembrane segments. (version 2, revised 971113) (version 3, revised 981127, now sumscor based on calc_istm_score) sumscor gives a confidence value in the TM helix based on an analysis of the TM helices in the WHOLE protein. # # These parameters were refined on MG # see genomes/mg-analyze-maxh-981127.xls # my = (minhall<-2 ? 4 : (tot_aa > 50 ? 3 : ( minhall <-1.75 ? 2 : ( tot_aa > 20 ? 1 : 0)))); ### ........................................................................... ### .........................................................................., ### Table tm_segs ### ~~~~~ ### is being read by script i-apply-mask.pl, ### which is being interpreted by perl at Sat Nov 28 16:22:58 EST 1998 ### with pid 8527 on oin. ### ..........................................................................,