Index of /align/src/profiles-code

 Name                    Last modified       Size  Description

 Parent Directory        27-Oct-2000 04:44      -  
 ChangeAlphabet.c        27-Oct-2000 04:42     3k  
 ChangeAlphabet.h        27-Oct-2000 04:42     1k  
 Entropy.c               27-Oct-2000 04:42     4k  
 Entropy.h               27-Oct-2000 04:42     1k  
 EntropyTest.c           27-Oct-2000 04:41     1k  
 FreqDist.c              27-Oct-2000 04:42     3k  
 FreqDist.h              27-Oct-2000 04:42     1k  
 GlobinLookup.c          27-Oct-2000 04:42     3k  
 GlobinLookup.h          27-Oct-2000 04:42     1k  
 README                  27-Oct-2000 04:55     1k  
 Seq.h                   27-Oct-2000 04:42     1k  
 Seq.prototypes.h        27-Oct-2000 04:42     1k  
 Seq.util.c              27-Oct-2000 04:42    10k  
 SeqPrototypes.h         27-Oct-2000 04:42     1k  
 SetOfInt.c              27-Oct-2000 04:42     3k  
 SetOfInt.h              27-Oct-2000 04:42     1k  
 makefile                27-Oct-2000 04:42     1k  

	 http://bioinfo.mbb.yale.edu/align/src/profiles-code
			Mark.Gerstein@yale.edu

This directory contains some rough routines for calculating the
sequence variability in an alignment, in terms of the entropy of
various profile columns. It is associated with the calculations 
in:

M Gerstein & R Altman (1995). "Average core structures and variability
measures for protein families: Application to the immunoglobulins,"
Journal of Molecular Biology 251: 161-175.
PUBMED-ID: 7643385
http://bioinfo.mbb.yale.edu/e-print/avgstr-jmb.pdf
http://bioinfo.mbb.yale.edu/hyper/mbg/AvgCore/

NB: The code in this directory will probably not compile right away.
It is meant as more of a collection of samples and guides, rather than
a usable program.

EntropyTest.c is program that is meant to be linked to many of the
routines in the other files.