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| What is Bioinformatics? pdf | 'oming in on function pdf |Bioinformatics class |The OED defines 'ome' |Other 'ome pages |Gerstein lab |
| Terms | Description | |
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|
|---|---|---|---|---|
| Genome | The full complement of genetic information both coding and non coding in the organism | |
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| Proteome | The protein-coding regions of the genome | 65,600 | 1096 | 1995 |
| |
The population of mRNA transcripts in the cell, weighted by their expression levels | |
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| Physiome | Quantitative description of the physiological dynamics or functions of the whole organism | 3650 | 16 | 1997 |
| Metabolome | The quantitative complement of all the small molecules present in a cell in a specific physiological state | 753 | 13 | 1998 |
| Phenome | Qualitative identification of the form and function derived from genes, but lacking a quantitative, integrative definition | 23,500 | 8 | 1995 |
| Morphome | The quantitative description of anatomical structure, biochemical and chemical composition of an intact organism, including its genome, proteome, cell, tissue and organ structures | 205 | 2 | 1996 |
| Interactome | List of interactions between all macromolecules in a cell | 168 | 4 | 1999 |
| Glycome | The population of carbohydrate molecules in the cell | 77 | 3 | 1999 |
| Secretome | The population of gene products that are secreted from the cell | 100 | 4 | 2000 |
| Translatome | The population of mRNA transcripts in the cell, weighted by their expression levels | 41 | 1 | 2001 |
| Fluxome | The population of proteins weighted by their fluxes | 10 | 1 | 1999 |
| Localizome | The localization of various proteins, both in terms of cell type and subcellular compartments | 10 | - | 2001 |
| Pseudome | The population of pseudgenes in the cell | 4 | - | - |
| Ribonome | The population of RNA-coding regions of the genome | 11 | - | - |
| Orfeome | The sum total of open reading frames in the genome, without regard to whether or not they code; a subset of this is the proteome | 418 | - | - |
| Regulome | Genome-wide regulatory network of the cell | 36 | - | - |
| Cellome | The entire complement of molecules and their interactions within a cell | 27 | - | - |
| Operome | The characterization of proteins with unkown biological function | 17 | - | - |
| Transportome | The population of the gene products that are transported; this includes the secretome | 9 | - | - |
| Functome | The population of gene products classified by their functions | 18 | - | - |
| Foldome | The population of gene products classified by their tertiary structure | 11 | - | - |
| unknome | Genes of unkown function | 4 | - | - |
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To add new and innovative omes to the list email:dov.greenbaum@yale.edu *Values as of 02/06/02 | ||||