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Report on PDB Structure 1tip

Qian, J. et al. (2001) Nucleic Acids Research 29: 1750-64

  Rankings Domain d1tipa_.   Domains not shown. d1tipb_.
The top-five ranked attributes:
  X(func)
pseudogene complement of the ribbon worm
I(pdbb,all)
interaction with beta proteins on different chains [yeast]
E(sage)
fold percentage in SAGE
E(ref)
fold percentage in reference transcriptome
C(sage)
level SAGE
value6804.22.620.0
rank146911
%ile98.697.096.695.894.9
The bottom-five ranked attributes:
  B (His,pdb40)
composition percentage of Gly for pdb40d
B (Asn,pdb100)
composition percentage of Met for pdb100d
B (Cys,pdb40)
composition percentage of Ala for pdb40d
P (all)
seq. identity
X (pseu)
year of fold determined
value 5.9 1.3 6.3 17.53 82
rank 300 314 308 184 381
%ile 26.5 25.2 24.5 14.8 9.3
  Interaction report for 1tip.

  Genome Occurrence.   Domain d1tipa_.   Domains not shown. d1tipb_.
Genome Aful Mjan Mthe Phor Scer Cele Aaeo Syne Ecol Bsub Mtub Hinf Hpyl Mgen Mpne Bbur Tpal Ctra Cpne Rpro
Fold 1 0 0 0 17 30 3 6 7 1 11 3 0 0 0 1 1 1 1 0
Superfamily 1 0 0 0 17 30 3 6 7 1 11 3 0 0 0 1 1 1 1 0
  Function Classification Domain d1tipa_.   Domains not shown. d1tipb_.
 Augmented Flybase+ENZYMEGenProtECMIPS
d1tipa_E-3.1.3.46/2.7.1.105NO01.05.01

  Core Structure does not exist for 1tip.

  Alignments. Domain d1tipa_.   Domains not shown. d1tipb_.
  # Pairsuntrimmed RMStrimmed RMS%sequence identitystructure p-valuesequence p-value
Fold 11 7.40 1.71 17.53 5.77e-08 8.18e-01
Superfamily11 7.40 1.71 17.53 5.77e-08 8.18e-01
Family0 . . . . .
Fold only 0 . . . . .
Sfam only11 7.40 1.71 17.53 5.77e-08 8.18e-01

Scop information.
RCSB PDB information.