YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Report on PDB Structure 1ama

Qian, J. et al. (2001) Nucleic Acids Research 29: 1750-64

  Rankings Domain d1ama__.   No additional domains. 
The top-five ranked attributes:
  G(rpro)
fold occurrence in Cpne
G(mtub)
fold occurrence in Bsub
G(cpne)
fold occurrence in Ctra
G(mthe)
fold occurrence in Mjan
G(phor)
fold occurrence in Mthe
value104381615
rank45677
%ile98.898.598.297.997.9
The bottom-five ranked attributes:
  B (Thr,pdb40)
composition percentage of Ser for pdb40d
B (Arg,pdb40)
composition percentage of Gln for pdb40d
B (Thr,pdb100)
interaction on different chains [pdb]
X (pseu)
year of fold determined
Q (all)
P-value (str.)
value 4.8 2.9 0 82 3.87E-23
rank 285 290 246 381 197
%ile 30.1 28.9 22.9 9.3 8.8
  Interaction report for 1ama.

  Genome Occurrence.   Domain d1ama__.   No additional domains. 
Genome Aful Mjan Mthe Phor Scer Cele Aaeo Syne Ecol Bsub Mtub Hinf Hpyl Mgen Mpne Bbur Tpal Ctra Cpne Rpro
Fold 18 16 15 18 32 40 19 23 36 43 33 15 9 2 2 3 5 8 10 5
Superfamily 18 16 15 18 32 40 19 23 36 43 33 15 9 2 2 3 5 8 10 5
  Function Classification Domain d1ama__.   No additional domains. 
 Augmented Flybase+ENZYMEGenProtECMIPS
d1ama__E-2.6.1.13.1.0401.01.01

  Core Structure does not exist for 1ama.

  Alignments. Domain d1ama__.   No additional domains. 
  # Pairsuntrimmed RMStrimmed RMS%sequence identitystructure p-valuesequence p-value
Fold 28 5.53 1.54 26.40 3.87e-23 6.42e-01
Superfamily28 5.53 1.54 26.40 3.87e-23 6.42e-01
Family6 2.00 0.43 48.66 1.57e-44 2.17e-68
Fold only 0 . . . . .
Sfam only18 6.77 2.04 17.90 6.03e-23 1

Scop information.
RCSB PDB information.