AvgOverResidue.c,97 void DeselectFile(5,108 int ComputeOffsetInAtomRecord16,376 double StatsOnResidueDouble25,597 CompareAtoms.c,373 #define SHORT_STRING_09 5,56 #define SHORT_STRING_10 6,104 int sprintfAtomShortForm 9,210 double nrDistance3D(21,570 atom_record * GetNextSelectedAtom(30,749 double EquivSecondToFirst50,1174 double AtomDistance(65,1618 double CompareCoordinatesSecondToFirst76,1943 void FlagOnEverywhere(117,3291 void FlagOffEverywhere(132,3712 void FlagOffForCAInChain 146,4062 ConvertMat.c,28 double * nr33tofort(24,579 ExtraAtomRecords.c,257 ExtraAtomRecord ** InitExtraAtomRecords(4,20 void CopyAtomVects2To116,304 void ThresholdAtomVects44,926 void dVToB(64,1330 void BDivRefVToOcc 84,1850 void RefVToB(99,2225 atom_record * InitDummyAtom(117,2676 atom_record * find_atom_in_file(136,3050 FixWater.Lib.c,51 #define BAD_INDEX 42,995 #define IDX(IDX43,1074 HandleOptions.c,369 # define FILENAME 2,78 char * ReturnArgvMatch(8,318 int ArgvMatch(22,693 char * StringAfterOption38,1093 FILE * FileAfterOption53,1582 double DoubleAfterOption90,2616 char * StringAfterKeyInDB106,3137 double DoubleAfterKeyInDB122,3661 char * GetEnvAndJoin(138,4162 # define FMT 141,4276 # define LOC_PRINT(LOC_PRINT142,4357 char * Expand1stEnvVar(176,5490 LucianoHelixAxis.c,25 double transform(24,748 MakeNewAtom.c,332 atom_record * MakeNewAtom(3,26 file_records *ConstructNDummyAtoms(75,2092 void FreeFileRecordsWithOutFreeingAtoms(91,2471 file_records *JoinFileRecords_1then2 104,2721 file_records *MoveSelectedToDerivedFileRecord(128,3324 file_records *NewFileRecWithOutWaterOrSymChain(158,4065 file_records *NewFileRecWithOutWater(175,4557 ModifiedVolume.c,251 void PrintVolumeParameters(5,68 void N_calculate_volume 37,1478 int N_calculate_vertices 145,4557 void N_calculate_atom_volume(197,5899 void N_Calculate_Volumes 222,6502 void NN_calculate_atom_volume(253,7462 void NN_Calculate_Volumes 281,8252 MoreExtraAtomRecord.c,602 void DivideAtomVects_1eq2Div34,35 void MultiplyAtomVects_1eq2times342,886 void SubtractAtomVects_1eq2Minus380,1741 void WriteExtraAtomRecord115,2544 # define SHORT_STRING_09 118,2645 # define SHORT_STRING_10 119,2694 # define SPACE_CHAIN 120,2743 void WriteExtraAtomRecords 143,3312 void RadiiToB(152,3529 void CovVDWRadiiToOccB(163,3722 void AbsB(174,3947 void WriteLargeExtraAtomRecord183,4090 # define SHORT_STRING_09 186,4209 # define SHORT_STRING_10 187,4258 void WriteLargeExtraAtomRecords 216,5092 void ScalarToAtomVects228,5448 void DefaultInitExtraAtomRecordsToScalar248,5835 More_atom_types.c,92 #define DEFAULT_RESIDUES 3,30 void WriteAtomTypes(297,3477 void UpdateAtomTypes(309,3736 NFracSurf.c,195 void NPrintResidueRecord 3,25 # define TRIPEP_SELECT(TRIPEP_SELECT22,616 static void SelectTriPeptide20,511 static void Find_FracSurf_ForTriPeptide71,2079 void Find_FracSurf_ForFile96,2679 NNCalcRatio.c,64 double CalcRatio7 116,3280 double NNcalculate_ratio 135,3863 NNvolume.c,582 void plot_a_line(11,241 #define DET(DET46,1301 void generate_vertex 51,1478 void delete_vertex 116,3409 void process_neibour(140,4122 void calculate_plane_constant187,5553 void generate_initial_dummy_vertices 211,6380 int check_dummy_were_eliminated 246,7577 int calculate_vertices 259,7890 int mark_for_addition 315,9331 double tet_volume 347,10264 void calculate_volume 384,11693 void calculate_atom_volume(489,14568 void check_shell_resnum 515,15198 void calculate_volumes 529,15550 int compare_neibour_descriptors(553,16288 int fill_atoms_for_volume(566,16583 NRVects.c,1021 NRMatrix33P Rot_ZtoU_YtoZxV(5,41 void NR_SimpPrintMat33 36,801 double ** NR_mkrotmat(43,917 double * VectRotate_1is2times3 71,1730 double * VectRotate_1by2 79,2000 double * VectTranslate_1by2 89,2308 double * VectSub_1is2minus3 97,2426 NRMatrix33P IdentityMatrix(105,2577 double ** Transpose(113,2772 double NR_dotprod(131,3011 double NR_length(136,3103 double NRVect_Mean(141,3169 double NRVect_SumSq(152,3299 double NRVect_Covar(166,3456 void NRVect_Print(180,3734 NRMatrix33P NR_MakeMat1WithVect234(191,3906 NRVectP NR_Normalize 209,4203 NRVectP CopyNRVect3_1to2 217,4336 NRVectP NR_cross_1eq2x3(223,4452 NRVectP NR_perp_dir_1eq2x3(231,4656 NRVectP NR_GetXYZVector(239,4795 # define WHOLE_ARRAY(WHOLE_ARRAY241,4883 NRMatrix33P NR_CalcI33(265,5534 NRMatrix33P NR_CalcCovarMat33(281,5998 void RotateXYZby1(295,6365 void TranslateXYZby1(306,6614 void DiagMatrix33318,6848 void CyclicPermuteVecMat352,7526 void PermuteEigenValsVecsSoLargestLast366,7869 int LargestElementIndex 381,8363 NSelect.c,89 void PrintAtomFlags(3,23 void FlagOnForWaters(58,1015 void FlagOnForHydrogens(69,1236 Ninit.c,68 void initial_residues 33,575 void default_initialization 142,5396 RadGyr.c,74 double RadGyrFromStructure(3,22 void DistScalDFromCentroidToSrfV 30,603 ReadRadFile.c,118 atom_record * RadFileStringToNewAtom(3,26 file_records *ReadRadFile(63,1903 file_records *OpenReadRadFile(108,3036 ReadTraj.c,287 static int rget_int(17,620 int newrecord(36,964 void endrecord(46,1139 int ftget_byte(58,1331 int ftget_int(71,1493 int ftget_short(90,1766 int ftget_float(109,2033 int ftget_str(129,2327 int get_mdb_coords 147,2581 bool BrittReadTrajWithSkip 237,4897 bool BrittSkip 267,5782 ResidueLinkUp.c,230 void VectorizeAtoms5,37 void LinkUp_OneResidue56,1034 void LinkUp_Residues_Atoms(74,1371 void PrintResidueRecord 114,2537 void PrintAllResidues(149,3357 void NewPrintResidueRecord 172,3941 void NewPrintAllResidues(187,4403 SelectParsers.c,70 int EquivSelectCA(3,19 int NSelectCA(46,1090 void SelectCA(73,1812 SimpleVolume.c,72 void NPrintVolumeParameters(3,30 void Simple_Calculate_Volumes 18,450 VectorList.c,722 void MolscriptDrawLine(4,27 void f_O_gdl_Vector 10,193 void O_gdl_Vector 20,473 VectorList * AllocateVectorList 31,814 int AddToVectorList47,1275 void O_gdl_PrintVectorList 65,1735 double ** VectorList3dCross 79,2152 void VectorListKludgeArrow 91,2648 void O_gdl_BeginObject(102,3024 void O_gdl_EndObject(113,3302 void AIPrint1Vector 121,3501 double * DrawingLimits(133,3788 double * MessedupDrawingLimits(162,4423 double * nrMidPoint(191,5034 void PrintBoundingBox(199,5213 void AIPrint1Line 241,6943 void AISimplePrintHeader(252,7246 void AISimplePrintTrailer(266,7768 double CalcLineWidth(272,7880 void AISimplePrintVectors(286,8214 void AIDrawCAofSelection(296,8476 # define MAX_VECTORS 298,8522 atom_types.c,214 typedef struct char8 char83,18 typedef struct char8 { char name[8] ; } char8 char83,18 char * atom_type_name(13,225 int find_type_definition 19,303 int allocate_atom_type(35,578 void read_atom_types 56,898 buried_water.c,207 void check_if_buried 10,196 void initialize_buried_check(68,1451 void traverse_buried_water(78,1700 void flag_buried_water(94,2187 void dont_ignore_atom(100,2275 void dont_ignore_buried_water(105,2356 call-exit.c,21 void call_exit 4,75 centroid.c,165 int FileSelectToXYZ(3,24 void XYZToFileSelect(23,398 int CentroidFromStructure(42,762 void HelixTipsFromStructure(60,1131 double FindFitTranslationOnly136,3016 coord.c,473 #define COORD_C14,379 void fputpdb(29,742 void resize(43,1174 void invert(59,1561 void Hinds_rotate(71,1894 void Hinds_translate(89,2463 float_t distrms(105,2884 float_t lopside(130,3573 static int_t solve(160,4605 #define epsilon 164,4737 #define sqrt3 165,4758 static float_t justrms(202,5670 static void justbothrms(216,6004 float_t fitrms(236,6494 void bothrms(301,8621 float_t bestrms(368,10870 static void matrix(382,11326 float_t bestfit(497,15113 dhinds_wrap.c,79 #define COORD_C4,38 CoordType * FileSelectToHinds(13,173 double MyFit38,696 errors.c,224 #define ERRORS_C17,466 void init_err(37,965 void init_lock(46,1126 void set_info(53,1323 int_t get_info(55,1406 void inform(58,1455 void warning(72,1765 void error(87,2081 void fatal(113,2913 void ioerror(132,3486 exclude_files.c,248 int encode_file(4,53 void record_exclude_file 50,913 void record_include_file 57,1039 void read_include_exclude_file 66,1167 void open_and_read_include_exclude(90,1560 void initial_exclude_include(99,1786 int check_if_file_included(113,2040 grid.c,142 void shift_atom(6,21 void record_atom_in_grid(17,162 grid_descriptor * gridify 40,700 void traverse_grid(79,1574 void free_grid(112,2176 hbond.c,618 double FindCosine 9,219 double FindAngle 42,1014 # define DEG_ACOS(DEG_ACOS45,1155 void CalculateHbondAngles55,1362 bool IsAnAcceptor(85,2315 bool IsADonor 108,2973 bool AreCovalentlyConnected 135,3877 bool AreHbonded195,5703 # define HBOND_DIST_THRESHOLD 200,5897 # define CNH_O_ANGLEMIN 202,5932 # define CNH_O_ANGLEMAX 203,5959 # define NH_CO_ANGLETHRESH 205,5988 int SaveHbond250,6928 # define MAX_HBONDS 255,7137 int HbondCmp 278,7619 Hbond_Data *SortHbonds 289,7915 void PrintHbonds 323,8878 void PrintHbonded367,10395 void FindAllHbondsInAStructure 390,11069 # define CUTOFF_DIST 393,11217 hohvect.c,936 # define FILENAME 2,72 int mkfrathoh38,876 void pdbtohoh(54,1312 void hohtopdb(71,1704 void hoh2xyz86,2117 void xyz2hoh98,2485 void hohstereochem(115,2993 double * translate(125,3396 double * vectsubtract 135,3660 double *mkmat145,3929 double *rotate_to_z_axis(165,4425 double *rotate(191,5126 double *qrotate(210,5611 double *scale(244,6613 void prt_vect(255,6854 void prt_hoh(263,7135 float hypot3(274,7568 double ndistsq281,7797 void origin_rot(298,8197 double *mkrotmat(313,8552 double *xmkrotmat(344,9353 # define AXIS(AXIS348,9490 # define RAD 349,9517 # define ZERO 350,9541 # define ONE 351,9557 # define SMALL 352,9573 # define MAX(MAX353,9598 # define MIN(MIN354,9632 # define ROT(ROT355,9666 # define RSMALL 356,9696 double cos_from_z_axis 574,16181 double dotcos 596,16644 void hohdipole_rad_proj 606,17030 bool ishoh(649,18110 void hohdipole(663,18558 double *randlmn(672,18866 hutils.c,117 void mark_as_rejected(7,81 void reject_neibours(15,252 void reject_touching_atoms(27,685 int metal_atom_p(38,954 io_RT.c,195 void VerboseDumpRT(4,78 double ** Get3x3Matrix(27,866 # define WHOLE_ARRAY(WHOLE_ARRAY30,1002 # define SPC31 34,1119 double * GetXYZVector(63,1958 # define WHOLE_ARRAY(WHOLE_ARRAY66,2092 jacobi-dummy.c,18 void jacobi(3,20 khist.c,261 void DumpData(3,20 void SimplePrintHisto(11,135 void DumpHisto(23,427 void NormalizeHisto(31,609 float * ReadHugeAmountOfDataForHisto(39,731 void histo 85,1706 Statistic * AllocateStats(136,3183 Statistic * StatsOnFloats(148,3415 float nhisto 163,3643 little-nr.c,268 void nrerror(3,24 float *vector(10,147 double *dvector(18,329 float **matrix(26,517 double **dmatrix(42,984 void free_vector(58,1458 void free_dvector(63,1538 void free_matrix(68,1620 void free_dmatrix(74,1760 int *ivector(81,1903 void free_ivector(89,2081 mallocd.c,122 void x_free(9,194 void *x_malloc(22,378 void mallocd_start(31,536 void mallocd_junk(37,602 void mallocd_print(39,625 manipulate.c,527 void free_atom_record(13,252 void free_file_records 28,527 file_records * merge_file_records(49,877 file_records * merge_files_and_purge 69,1447 void traverse_all_file_records(93,1935 void traverse_part_file_atoms(107,2332 void traverse_file_atom_records(128,2824 void traverse_rest_of_atoms(143,3120 void traverse_atom_pairs 149,3325 void traverse_all_atom_pairs 159,3561 void do_only_protein(167,3709 void traverse_file_protein_atoms(173,3850 void do_only_water(183,4049 void traverse_file_water_atoms(190,4193 mbg_RotTranCoord.c,133 void RotateCoordinates(22,487 void SimpleDumpRT(39,998 # define FF 42,1134 # define T 43,1155 void TranslateCoordinates(55,1621 myawk.c,887 # define FILENAME 3,73 FILE * NarrowFileBetwStrgs(9,291 bool StrEq 26,752 char * SaveString 40,1073 TokenizeData * InitTokens 52,1371 bool InitLexer 91,2384 char * ConvertUnixControlChar(139,3694 int StreqWithSpaces(167,4312 char * StringOfIndex 177,4593 int IndexOfString2(189,4861 char * fgets_WithDelim(205,5265 int IndexOfString(220,5666 int LastIndexOfString(243,6171 bool InSymbolTableP 255,6454 int SymbolTableIndexNoAdd 267,6765 void PrintIndexedStrings(279,7117 void PrintTokens(292,7423 void PrintTokens2(305,7729 double * ToksToDoubles(318,8086 char ** TokenizeLine(332,8416 int TokenizeFile373,9399 bool TrueBetweenP(386,9742 bool OnBetwP(413,10489 bool InclusiveOnBetwP(435,11165 bool OnBetwStrgs(457,11851 bool OnBetwStrgs2(464,12074 bool InclusiveOnBetwStrgs(472,12351 bool InclusiveOnAfterStrg(480,12653 bool InclusiveTrueBetweenP(488,12922 neibour-cube.c,385 void setup_atom_definition 12,144 void check_min_max_xyz 23,410 void setup_minmax_xyzr 47,885 void setup_file_records 69,1279 #define CUBE_SIDE 83,1495 void put_atom_in_cube(91,1784 void add_file_to_neibouring_cube(110,2262 void in_setup_neibouring_cube 131,3045 void setup_neibouring_cube 176,4138 void call_with_neibours(190,4452 void always_call_with_neibours(259,6169 nrvect.c,1145 # define FILENAME 2,72 # define DOT_PROD(DOT_PROD7,226 # define LENGTH(LENGTH8,285 void FreeVector(11,395 void dump_matrix 44,1136 double * argv2dvect 55,1397 double ** rotate_v_around_z_to_x 71,1885 double * direction_from_2vects 81,2187 double * normalize 91,2498 double * nrcopy 100,2743 double * nrsum 111,2963 double * midpoint 122,3217 double * nrscale 133,3488 double * nrrot 144,3735 double ** matmult33 155,4106 double ** nrmkrotmat 187,4879 # define AXIS(AXIS191,5011 # define RAD 192,5036 # define ZERO 193,5060 # define ONE 194,5076 # define SMALL 195,5092 # define MAX(MAX196,5117 # define MIN(MIN197,5151 # define ROT(ROT198,5185 # define RSMALL 199,5213 double ** nr_rotate_to_z_axis 268,6960 void dump_vector 283,7489 void GraphicsVector3dCross 292,7724 void GraphicsVectorKludgeArrow 304,8297 void graphics_vectors 314,8696 void atom_vector322,8995 double angle_on_plane 333,9310 double dist_on_plane 347,9862 double * second_from_first 359,10267 double * vect 366,10478 double * ProjectPtToSegment 377,10714 bool nreq 409,11718 # define TINY 412,11797 double ** PtsOnLine 418,11957 pdbio.c,397 # define FILENAME 2,74 int nrd_pdb7,309 int rd_pdb17,662 void pdbdebug76,2475 void nprt_pdbrec89,2987 void nwrt_pdb98,3339 void nwrt_dia112,3749 void wrt_pdb179,5111 void nwrt_pdbsel193,5615 void wrt_pdbsel208,6065 int SimpleWrtAtom222,6601 int SimpleWrtAtom2241,7080 int Nselect 261,7561 # define ISBBONE(ISBBONE300,8454 void pdb_select(307,8787 void pdb2vectcentroid 329,9461 read_residue.c,524 atom_definition * find_atom_definition_1(17,344 atom_definition *assign_dummy_atom_definition(51,1395 atom_definition * find_atom_definition(60,1655 residue_description *find_residue_type 83,2396 residue_description * alloc_residue 108,3079 void read_residue_atoms 167,4511 void read_residue_definitions 239,6486 void traverse_residue_definition 305,7877 void traverse_all_residue_definitions 319,8185 void traverse_atom_definitions 328,8391 void read_standard_volumes(340,8593 void ShowAllResidueTypes 385,9621 readpdb.c,791 void invert_the_scale(26,451 int find_record_type 90,2127 void copy_all_record 107,2368 void record_ssbond(126,2797 void check_for_nmr 143,3291 void record_header(151,3413 void start_model 158,3518 void record_end_model(163,3593 void record_cryst 168,3669 void record_scale(190,4212 void maybe_call_specific_function 213,5061 void add_suphur_bridges(236,5646 void record_sg_atom(278,6678 atom_record *read_record 297,7295 file_records *read_pdb_file 392,9925 file_records *open_and_read_pdb 469,11862 file_records *repeat_read_pdb 500,12625 FILE *open_for_repeat_read 524,13159 void write_pdb_header(538,13343 void write_pdb_record 555,13803 file_records * write_pdb_file 593,15135 file_records * open_and_write_pdb 610,15436 file_records *open_pdb_stdin 628,15781 reference.c,42 void maybe_read_reference_volume(75,1915 residue.c,478 #define LOOP_RES_CHAIN(LOOP_RES_CHAIN3,18 void free_file_residues 5,96 residue_record * allocate_residue_record(26,580 int make_residues 55,1443 void traverse_residue_atoms 151,3744 int traverse_file_residues(166,4083 int traverse_file_protein_residues(198,4710 residue_record * residue_by_number 238,5493 atom_record *find_atom_in_residue 280,6289 atom_record *find_atom 311,7058 residue_record * next_residue(329,7319 residue_record *find_atom_residue(343,7628 richards_RAD.c,328 # define FILENAME 2,81 int * select_all(9,322 int rd_richards_RAD_volume63,2068 void wrtsel_richards_RAD_volume116,3632 # define RAD_AREA_IN 207,7020 # define RAD_AREA_OUT 210,7109 int rd_richards_RAD_area214,7278 void wrtsel_richards_RAD_area268,8735 int sum_per_residue292,9557 int sum_per_residue_prop1000315,10122 selection.c,417 void set_atom_selection_on 4,19 void set_atom_selection_off(10,116 void turn_selection_on(17,282 void turn_selection_off(22,402 void setup_flags_from_file(28,527 void select_residues_for_calculation 98,2372 void select_atoms_for_calculation 133,2931 void setup_selection 179,3696 void select_protein_atoms(192,4064 void ignore_water_atoms(202,4254 void ignore_hetatm(208,4377 void ignore_hetatms(214,4518 shell.c,364 #define MAYBE_WATER(MAYBE_WATER3,18 void shell_with_not_contact 19,691 void fill_not_contact 59,1547 void check_cavities_again(87,2380 void check_for_cavities 109,3002 void check_in_vdw 135,3745 grid_descriptor * generate_shell_grid 184,4829 void increment_water_counter(213,5435 void generate_dumm_water(227,5855 file_records * generate_shell(266,6906 stats.c,637 # define FILENAME 2,70 Statistic * InitStats 8,293 void DumpStats 22,636 void NDumpStats 45,1279 # define HEAD(HEAD48,1394 # define FIELD(FIELD49,1459 void IncrementStats(68,1956 void IncStatsWithWts(92,2625 # define MAX_ERROR 111,3143 # define SIGNAL_ERROR(SIGNAL_ERROR113,3167 # define CHECK_SET(CHECK_SET122,3388 # define FIX_LESS_THAN_0(FIX_LESS_THAN_0132,3565 void ReComputeDerivedStats(158,4271 void ReComputeDerivedStats2 170,4715 # define MAX_ERROR 175,4854 # define SIGNAL_ERROR(SIGNAL_ERROR177,4880 # define CHECK_SET(CHECK_SET186,5101 # define FIX_LESS_THAN_0(FIX_LESS_THAN_0196,5283 surface.c,192 insert_arc 12,461 double sum_of_arcs(56,1577 void setup_plane_data 73,1888 void calculate_atom_surface 122,3745 void call_calculate_atom_surface 212,5961 void calculate_surface 220,6195 symmetry.c,371 char * find_symm_filename 9,150 void free_space_group(22,431 int read_coordinate_spec(29,509 int read_operator(100,2379 void read_symmetry_operations 109,2719 space_group * find_space_group 128,3142 int fill_space_group 138,3382 void fractionalize_atom(173,4194 void un_fractionalize_atom(186,4482 void fractionalize(205,4823 void un_fractionalize(211,4930 util.c,229 # define FILENAME 2,69 void swap 8,295 int push 35,1027 int pop 48,1348 double ranf(62,1666 void old_fillarray(78,2091 void fillarray 89,2357 nonfatal 100,2622 void sleep_while_file 110,3033 void prt_time 130,3665 utils.c,473 void print_an_atom(7,132 void serious_error 17,321 void warning 31,844 void soft_warning 52,1323 atom_record * nth_atom(59,1467 atom_record *atom_by_number 68,1610 double atoms_distance 85,1982 int is_cb(96,2230 int is_ca(104,2323 int is_c(111,2415 int is_n(119,2507 int is_o(125,2597 int isCAorP(135,2750 void maybe_free(144,2934 FILE *stream_from_string 156,3198 char * malloc_and_zero 170,3405 char *new_string 180,3516 void read_residue_spec(190,3639 vectors.c,507 #define VECTORS_C18,506 dbl_t vsumby3(31,808 dbl_t vsumsqr(55,1370 dbl_t dvdot(77,1911 dbl_t vdotby3(101,2545 uint_t vmin(131,3410 uint_t vmax(143,3691 float_t vminby(157,4011 float_t vmaxby(186,4761 dbl_t vsumby(215,5511 dbl_t vsumsqrby(244,6129 dbl_t vdotby(273,6821 void dvdiv(304,7808 void vxform(316,8027 void gather(331,8372 void dgather(337,8530 void mgather(343,8686 #define TINY 355,9021 void ludcmp(357,9043 void lubksb(412,10363 void luinvrt(440,10988 dbl_t ludet(460,11482 yh_commandline.c,404 char *d_getopt(8,81 void print_options_message(46,661 void initialize_selection 69,1598 void do_initialization 83,1869 file_records *read_next_file(118,2698 file_records * read_next_file_checked(136,3060 file_records * read_next_file_and_check(151,3398 file_records *read_all_files 161,3698 char * command_line_arg(175,3984 int command_line_option(180,4052 double double_from_option(186,4139 yh_mbg_util.c,550 void FlagAllAtomsInCYS(5,39 int AtomIndexInFile(25,522 void PrintField(41,919 char * SubsPercent(100,2067 char * SubsTilde(110,2260 char * string_from_option(120,2451 void WriteExtendedRecord 129,2626 #define LF_STRING_09 150,3200 #define LF_STRING_10 151,3286 file_records * write_pdb_all 179,4082 file_records * WriteExtendedFile 189,4285 debug_res(203,4538 residue_record * previous_residue(213,4712 int Nterm(224,4956 int OK_atom(236,5232 void switch_on(250,5541 void switch_off(255,5616 void new_read_standard_volumes(260,5693 ystats.c,350 #define LOOP_SOME_MEASUREMENTS(LOOP_SOME_MEASUREMENTS14,187 #define LOOP_MEASUREMENTS(LOOP_MEASUREMENTS15,287 void init_measurement_vectors(19,368 void add_measurement 32,743 void init_measurement(42,996 void init_all_measurements(53,1223 void init_some_measurements(58,1307 void sum_measurement 74,1577 void sum_some_measurements(85,1861