Index of /hyper/mbg/ProtMotBkChap
Name Last modified Size Description
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Parent Directory 22-Jun-1997 17:01 -
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README 30-Jun-1995 20:34 4k
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disk1a/ 17-May-1996 16:46 -
disk2/ 17-May-1996 16:46 -
disk3/ 17-May-1996 16:46 -
disk4/ 17-May-1996 16:46 -
disk5/ 17-May-1996 16:46 -
disk6/ 17-May-1996 16:46 -
Computer Files for two book chapters
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
by Mark Gerstein
for a book on protein motions
editted by S Subbiah
These files are available in two ways:
(1) on 6 disks
(2) in the directory ~ftp/pub/mbg/ProtMotBkChap on hyper
This directory is in turn available via
anonymous ftp using the following URL
ftp://hyper.stanford.edu/pub/mbg/ProtMotBkChap/
================
General Comments on file formats
================
*.eps = Encapsulated postscript file.
Those marked [i5-eps] were prepared using
Illustrator 5.5 on the Mac. They are still
able to be editted using illustrator.
*.ps = Large postscript images
*.ps.Z Under unix they are stored using the unix "compress" command. Use
"uncompress" to decompress them. This command is
available on the mac through StuffIt.
*.rtf = Text generated by Macintosh MS-Word 5.1 which
was saved in RTF interchange format
*.doc = Text generated by Macintosh MS-Word 5.1 which
was saved in normal format (this was not put onto hyper).
disk*/ = These directories correspond to 800K and 1.44M
disks that I made up.
[BC] : For the figures marked with a [BC], Biochemistry
retains the copyright.
[PM] : Figures marked with a [PM] are part of the protein
motions database, which retains their copyright.
==========
Chapter 4: Structural Mechanisms for Protein Motions
==========
disk1a/ch4-mechs.rtf -- Text in Mac Word 5 form
disk1b/ch4-mechs.doc Rough versions of many of the figures
are contained within the text
disk2/fig41-mac.eps -- [i5-eps] [BC] fig 4.1 (Big Mac schematic)
disk3/fig43-shr.eps -- [i5-eps] [BC] fig 4.3 (shear motion)
disk3/fig44-sax.eps -- [i5-eps] fig 4.4 (screw axis)
disk3/fig45b-cs.eps -- [i5-eps] fig 4.5b (overall motion in cs)
disk3/fig45c-cs.eps -- [i5-eps] fig 4.5c (helix packing in cs)
disk3/fig47a-bb.eps -- [i5-eps] [PM] fig 4.7a (TIM barrel schematic)
disk3/fig47b-tl.eps -- [i5-eps] [PM] fig 4.7b (TIM loop motion)
disk3/fig47c-th.eps -- [i5-eps] [PM] fig 4.7c (Two halves of TIM loop)
disk6/fig42-hng.eps -- [i5-eps] [BC] fig 4.2 (4 types of hinges)
disk6/fig42-hng.ps To open the .eps file with illustrator you need
four supplementary files, which are on the disk.
* BIOCHEM.ak3e_hlx7.eps
* BIOCHEM.lzm_hlx.eps
* BIOCHEM.lf_sheet.eps
* BIOCHEM.ldh_hinge1.eps
Alternatively, you can just print out the .ps
file.
disk2/fig46-lf3.eps -- [i5-eps] [BC] fig 4.6 (lactoferrin, 3 images)
disk6/fig46-lf3.ps To open the .eps file with illustrator you need
three supplementary files, which are on the disk.
* 1lfh.cleft.bw.eps
* 1lfg.cleft.bw.eps
* n1lfh_screw.eps
Alternatively, you can just print out the .ps
file.
disk3/cs.trace.pict.sea -- [BC] fig 4.5a (cs cylinder cartoon)
This figure is presented in two ways:
(1) as self-unstuffing mac archive
containing a mac PICT file of
a scanned image and (2) a nice
Xerox of the original
which can be directly used.
USE WHICHEVER COMES OUT BETTER!!
==========
Chapter 5: Structural Mechanisms for Protein Motions
==========
disk1a/ch5-motdb.rtf -- Text in Mac Word 5 form
disk1b/ch5-motdb.doc Figure 5.2 is contained within the text.
disk4/fig51a-db.tif -- first part of figure 5.1 [PM]
This is a tiff file created by
Mac PhotoShop
disk4/fig51b-ak.ps.Z -- last 3 parts of figure 5.1. [PM] as
disk4/fig51c-gf.ps.Z compressed postscript
disk4/fig51d-sf.ps.Z
disk5/fig51b-ak.tif.Z -- last 3 parts of figure 5.1 [PM] as
disk5/fig51c-gf.tif.Z compressed tif images, which
disk5/fig51d-sf.tif.Z you can edit with PhotoShop