Index of /hyper/mbg/Lactoferrin

 Name                    Last modified       Size  Description

 Parent Directory        22-Jun-1997 16:01      -  
 Lactoferrin.tar.Z       14-Nov-1993 23:05   1.8M  tar archive
 README                  03-Oct-1994 12:41     3k  
 ToTopLevel.html         22-Aug-1994 01:40     1k  
 lf_hinge_movie.mpg      13-Oct-1994 13:32   2.8M  
 unpack/                 17-May-1996 15:45      -  

	     ftp://hyper.stanford.edu/pub/mbg/Lactoferrin

This archive contains postscript files relating to the following
paper:

----------------------------------------------------------------------
M Gerstein, B Anderson, G Norris, E Baker, A Lesk, & C Chothia (1993).
J. Mol. Biol. 234: 357-372.
----------------------------------------------------------------------

The "unpack" directory contains all the files in unpacked form.  The
Lactoferrin.tar.Z file contains all the files in tar'ed and compressed
form.

* General Conventions on file names in the archive

*.bw.* files are in black and white, and
*.rgb.* files are in color.

*1lfg* files pertain to the closed form, and
*1lfh* files pertain to the open form. 

n* files were made with the slightly better refined coordinates of
	the apo form than in the protein data bank. 

r* files were made during the revision of the paper. 

The specific files that appeared in the paper are marked by a [#].

                               ========
* Postscript files relating to Figure 1
                               ========

These show a cartoon representation of lactoferrin. The view is
looking down the the screw axis. The postscript was generated with
Molscript.

1lfg_screw.ps
1lfg_screw.rgb.ps
1lfh_screw.ps
1lfh_screw.rgb.ps
n1lfg_screw.ps      #
n1lfh_screw.ps      #

                               ============
* Postscript files relating to Figure 2 (a)
                               ============

The *.y.* files show a cartoon representation of lactoferrin similar
to those in Figure 1. The view is now perpendicular to the screw axis.

1lfh_screw.y.ps
1lfh_screw.y.rgb.ps
n1lfh_screw.y.ps    #

                               ============
* Postscript files relating to Figure 2 (b)
                               ============

Figure 2(b) consists of 2 stereo pairs. The rnlf_beta12.* files are
the four components of this figure, separately and together. The
lf_beta.* files show a closeup of the hinge from another viewpoint.

lf_beta12.2.ps
lf_beta12.ps
rnlf_beta12.BotLeft.ps
rnlf_beta12.BotRight.ps
rnlf_beta12.TopLeft.ps
rnlf_beta12.TopRight.ps
rnlf_beta12.ps      #
rnlf_beta12.sqz.ps  #


                               ========
* Postscript files relating to Figure 3
                               ========

lf_hinge_rama.ps    #


                               ========
* Postscript files relating to Figure 4
                               ========

nlf_subtract_asa.ps #
nlf_subtract_vol.ps #

                               ========
* Postscript files relating to Figure 5 
                               ========

These files show sections through the open and closed forms of
lactoferrin. The *.axis.* files are orientated so the viewer is
looking down the screw axis, and the *.cleft.* files are orientated so
the viewer is looking down the cleft between the domains. The
*_p251_sect.* files contain multiple pages and show the result of
slicing through lactoferrin sequentially. All the postscript was
generated with Arthur Lesk's ArtPlot program.

1lfg.axis.bw.ps    
1lfg.axis.rgb.ps
n1lfg.axis.bw.ps
rn1lfg.axis.bw.ps    #
1lfg.cleft.bw.ps     # 
1lfg.cleft.rgb.ps

1lfh.axis.bw.ps
1lfh.axis.rgb.ps
n1lfh.axis.bw.ps     #
1lfh.cleft.bw.ps     #
1lfh.cleft.rgb.ps   

1lfg_p251sect.fix.ps
1lfh_p251sect.fix.ps
1lfh_p251sect.ps