Computer Files for two book chapters
		~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

			   by Mark Gerstein
		     for a book on protein motions
			 editted by S Subbiah


These files are available in two ways:

(1) on 6 disks

(2) in the directory ~ftp/pub/mbg/ProtMotBkChap on hyper
    This directory is in turn available via 
    anonymous ftp using the following URL

    ftp://hyper.stanford.edu/pub/mbg/ProtMotBkChap/

================
General Comments on file formats
================

*.eps = Encapsulated postscript file.
	Those marked [i5-eps] were prepared using
        Illustrator 5.5 on the Mac. They are still
        able to be editted using illustrator. 

*.ps   = Large postscript images 
*.ps.Z   Under unix they are stored using the unix "compress" command. Use 
          "uncompress" to decompress them. This command is 
          available on the mac through StuffIt. 

*.rtf = Text generated by Macintosh MS-Word 5.1 which
        was saved in RTF interchange format

*.doc = Text generated by Macintosh MS-Word 5.1 which
        was saved in normal format (this was not put onto hyper).

disk*/ = These directories correspond to 800K and 1.44M 
         disks that I made up.

[BC] : For the figures marked with a [BC], Biochemistry
       retains the copyright.

[PM] : Figures marked with a [PM] are part of the protein
       motions database, which retains their copyright. 

==========
Chapter 4: Structural Mechanisms for Protein Motions
==========

disk1a/ch4-mechs.rtf   -- Text in Mac Word 5 form 
disk1b/ch4-mechs.doc      Rough versions of many of the figures
                          are contained within the text

disk2/fig41-mac.eps    -- [i5-eps] [BC] fig 4.1  (Big Mac schematic)
disk3/fig43-shr.eps    -- [i5-eps] [BC] fig 4.3  (shear motion)
disk3/fig44-sax.eps    -- [i5-eps]      fig 4.4  (screw axis)
disk3/fig45b-cs.eps    -- [i5-eps]      fig 4.5b (overall motion in cs) 
disk3/fig45c-cs.eps    -- [i5-eps]      fig 4.5c (helix packing in cs) 
disk3/fig47a-bb.eps    -- [i5-eps] [PM] fig 4.7a (TIM barrel schematic) 
disk3/fig47b-tl.eps    -- [i5-eps] [PM] fig 4.7b (TIM loop motion) 
disk3/fig47c-th.eps    -- [i5-eps] [PM] fig 4.7c (Two halves of TIM loop) 


disk6/fig42-hng.eps    -- [i5-eps] [BC] fig 4.2  (4 types of hinges)
disk6/fig42-hng.ps        To open the .eps file with illustrator you need  
                          four supplementary files, which are on the disk.                         
                              * BIOCHEM.ak3e_hlx7.eps                         
                              * BIOCHEM.lzm_hlx.eps                           
                              * BIOCHEM.lf_sheet.eps                          
                              * BIOCHEM.ldh_hinge1.eps                        
                          Alternatively, you can just print out the .ps    
                          file.                                             

disk2/fig46-lf3.eps    -- [i5-eps] [BC] fig 4.6  (lactoferrin, 3 images) 
disk6/fig46-lf3.ps        To open the .eps file with illustrator you need  
			  three supplementary files, which are on the disk.
			      * 1lfh.cleft.bw.eps
			      * 1lfg.cleft.bw.eps
			      * n1lfh_screw.eps
			  Alternatively, you can just print out the .ps    
			  file.                                             

disk3/cs.trace.pict.sea --         [BC] fig 4.5a (cs cylinder cartoon)
                             This figure is presented in two ways: 
                             (1) as self-unstuffing mac archive
                             containing a mac PICT file of 
                             a scanned image and (2) a nice 
                             Xerox of the original 
                             which can be directly used. 
                             USE WHICHEVER COMES OUT BETTER!!

==========
Chapter 5: Structural Mechanisms for Protein Motions
==========

disk1a/ch5-motdb.rtf    -- Text in Mac Word 5 form 
disk1b/ch5-motdb.doc       Figure 5.2 is contained within the text. 

disk4/fig51a-db.tif     -- first part of figure 5.1 [PM]
                           This is a tiff file created by
                           Mac PhotoShop 
      
disk4/fig51b-ak.ps.Z    -- last 3 parts of figure 5.1. [PM] as
disk4/fig51c-gf.ps.Z       compressed postscript
disk4/fig51d-sf.ps.Z      

disk5/fig51b-ak.tif.Z   -- last 3 parts of figure 5.1 [PM] as 
disk5/fig51c-gf.tif.Z      compressed tif images, which
disk5/fig51d-sf.tif.Z      you can edit with PhotoShop