! / 975708902 0 0 0 12806 ` 3f3f3f3f3f3f3f3f3f3f3f3f3f3f3f>>>>>>>>>>>KKKKKKKKKKKKKKKKKKKKl:l:l:qFqFqFqFqFqFqFqFqFvvvvvvvvvvvv  ^^2Z2Z="="="="="="="="="="="="="="="="="="="="="="ppppppppppppppppppppppppppppp222^^^BBBBBBBBBB^^^        '''''''''377777I~I~I~I~I~I~I~I~I~I~I~fffZ"""""""""""""BBBBBBBBBBBBBBBBBBBBBBBBBB%%%%%%%%%;f;f;f;f;f;f;fBBBBBBBBBBBBBBBBN"N"N"UUUUUUUUUUUUUUUUUUUUUUUUUUUU|F|F|F|F|F|F|F|F|F|F|F|F|F~~~~~~~~~~~~~~~~~~~~~~~~~~ZZZZZZZZZZZZZZZZZZZZZZ*2*2*2*23v3v3v3v3v3v3v3v3v3v3vDZDZDZDZDZDZDZXXXXXXXXXXXXXXXjjjjjjjjjjjjjjjjjjjjjjjjjjjj"J"J"J"J"J"J"J"J"J"J"J"J"J"J"J"Jmax_measurementst_countinit_measurement_vectorsst_meanst_sdst_topst_bottomst_sumst_sum_sqadd_measurementinit_measurementinit_all_measurementsinit_some_measurementssum_measurementsum_some_measurementsnrerrorvectordvectormatrixdmatrixfree_vectorfree_dvectorfree_matrixfree_dmatrixivectorfree_ivectorMolscriptDrawLinef_O_gdl_VectorO_gdl_VectorAllocateVectorListAddToVectorListO_gdl_PrintVectorListVectorList3dCrossVectorListKludgeArrowO_gdl_BeginObjectO_gdl_EndObjectAIPrint1VectorDrawingLimitsnrMidPointPrintBoundingBoxAIPrint1LineAISimplePrintHeaderAISimplePrintTrailerCalcLineWidthAISimplePrintVectorsAIDrawCAofSelectionDeselectFileComputeOffsetInAtomRecordStatsOnResidueDoublesprintfAtomShortFormnrDistance3DGetNextSelectedAtomEquivSecondToFirstAtomDistanceCompareCoordinatesSecondToFirstFlagOnEverywhereFlagOffEverywhereFlagOffForCAInChainnr33tofortInitExtraAtomRecordsCopyAtomVects2To1ThresholdAtomVectsdVToBBDivRefVToOccRefVToBInitDummyAtomfind_atom_in_filefixwat_ReturnArgvMatchArgvMatchStringAfterOptionFileAfterOptionDoubleAfterOptionStringAfterKeyInDBDoubleAfterKeyInDBGetEnvAndJoinExpand1stEnvVartransformMakeNewAtomConstructNDummyAtomsFreeFileRecordsWithOutFreeingAtomsJoinFileRecords_1then2MoveSelectedToDerivedFileRecordNewFileRecWithOutWaterOrSymChainNewFileRecWithOutWaterCalcVHookFcnPrintVolumeParametersN_calculate_volumeN_calculate_verticesN_calculate_atom_volumeN_Calculate_Volumescompact_print_fileNN_calculate_atom_volumeNN_Calculate_VolumesDivideAtomVects_1eq2Div3MultiplyAtomVects_1eq2times3SubtractAtomVects_1eq2Minus3WriteExtraAtomRecordWriteExtraAtomRecordsRadiiToBCovVDWRadiiToOccBAbsBWriteLargeExtraAtomRecordWriteLargeExtraAtomRecordsScalarToAtomVectsDefaultInitExtraAtomRecordsToScalarWriteAtomTypesUpdateAtomTypesNPrintResidueRecordFind_FracSurf_ForFileCalcRatio7NNcalculate_ratiovolume_max_distancethe_methodvertices_countplot_fileplot_a_linegenerate_vertexverticesdelete_vertexprocess_neibourmark_for_additioncalculate_plane_constantgenerate_initial_dummy_verticescheck_dummy_were_eliminatedcalculate_verticestet_volumecalculate_volumecalculate_atom_volumefill_atoms_for_volumewater_model_modecheck_shell_resnumcalculate_volumescompare_neibour_descriptorsRot_ZtoU_YtoZxVNR_perp_dir_1eq2x3NR_MakeMat1WithVect234TransposeNR_SimpPrintMat33NRVect_PrintNR_mkrotmatVectRotate_1is2times3VectRotate_1by2VectTranslate_1by2VectSub_1is2minus3IdentityMatrixNR_dotprodNR_lengthNRVect_MeanNRVect_SumSqNRVect_CovarNR_NormalizeCopyNRVect3_1to2NR_cross_1eq2x3NR_GetXYZVectorNR_CalcI33NR_CalcCovarMat33RotateXYZby1TranslateXYZby1DiagMatrix33CyclicPermuteVecMatPermuteEigenValsVecsSoLargestLastLargestElementIndexPrintAtomFlagsFlagOnForWatersFlagOnForHydrogensinitial_residuesGLY_typeALA_typeVAL_typeLEU_typeILE_typePRO_typeMET_typePHE_typeTYR_typeTRP_typeSER_typeTHR_typeASN_typeGLN_typeCYS_typeHIS_typeGLU_typeASP_typeARG_typeLYS_typeresidue_character_typesdefault_initializationinitial_residues_ntA_typeG_typeU_typeC_typeRadGyrFromStructureDistScalDFromCentroidToSrfVRadFileStringToNewAtomReadRadFileOpenReadRadFilenewrecordendrecordftget_byteftget_intftget_shortftget_floatftget_strget_mdb_coordsBrittReadTrajWithSkipBrittSkipVectorizeAtomsLinkUp_OneResidueLinkUp_Residues_AtomsPrintResidueRecordPrintAllResiduesNewPrintResidueRecordNewPrintAllResiduesEquivSelectCANSelectCASelectCANPrintVolumeParametersSimple_Calculate_Volumesatom_type_namesatom_type_namefind_type_definitionallocate_atom_typeread_atom_typesatom_chargeatom_covalentatom_vdwburied_min_sidesburied_radiusburied_middle_position_ratiocheck_if_buriedinitialize_buried_checktraverse_buried_waterflag_buried_waterdont_ignore_atomdont_ignore_buried_watercall_exitFileSelectToXYZXYZToFileSelectCentroidFromStructureHelixTipsFromStructureFindFitTranslationOnlyfputpdbresizeinvertHinds_rotateHinds_translatedistrmslopsidefitrmsbothrmsbestrmsbestfitFileSelectToHindsMyFitjacparkerrorencode_filemax_include_filemax_exclude_filerecord_exclude_fileexclude_filesrecord_include_fileinclude_filesread_include_exclude_fileopen_and_read_include_excludeinitial_exclude_includecheck_if_file_includedshift_atomrecord_atom_in_gridgridifytraverse_gridfree_gridFindCosineFindAngleCalculateHbondAnglesAreCovalentlyConnectedIsAnAcceptorIsADonorAreHbondedSaveHbondHbondCmpSortHbondsPrintHbondsPrintHbondedFindAllHbondsInAStructuremkfrathohpdbtohohhohtopdbhoh2xyzxyz2hohishohhohstereochemndistsqtranslatevectsubtractmkmatrotate_to_z_axishypot3xmkrotmatrotateqrotatescaleprt_vectprt_hohorigin_rotmkrotmatcos_from_z_axisdotcoshohdipole_rad_projhohdipolerandlmnmark_as_rejectedreject_neiboursmetal_atom_preject_touching_atomsVerboseDumpRTGet3x3MatrixGetXYZVectorDumpDataSimplePrintHistoDumpHistoNormalizeHistoReadHugeAmountOfDataForHistohistoAllocateStatsStatsOnFloatsnhistomax_allocationx_freerecord_allocationx_mallocmallocd_startmallocd_junkmallocd_printfree_atom_recordfree_file_recordsmerge_file_recordsmerge_files_and_purgetraverse_all_file_recordstraverse_part_file_atomstraverse_file_atom_recordstraverse_rest_of_atomstraverse_atom_pairstraverse_all_atom_pairsdo_only_proteintraverse_file_protein_atomsdo_only_waterfirst_water_typesecond_water_typetraverse_file_water_atomsRotateCoordinatesSimpleDumpRTTranslateCoordinatesNarrowFileBetwStrgsInitLexerTokenizeLineOnBetwStrgsStrEqSaveStringInitTokensConvertUnixControlCharStreqWithSpacesStringOfIndexIndexOfString2fgets_WithDelimIndexOfStringLastIndexOfStringInSymbolTablePSymbolTableIndexNoAddPrintIndexedStringsPrintTokensPrintTokens2ToksToDoublesTokenizeFileTrueBetweenPOnBetwPInclusiveOnBetwPOnBetwStrgs2InclusiveOnBetwStrgsInclusiveOnAfterStrgInclusiveTrueBetweenPsetup_atom_definitioncheck_min_max_xyzsetup_minmax_xyzrsetup_file_recordsput_atom_in_cuben_cubeadd_file_to_neibouring_cubecube_edgesin_setup_neibouring_cubesetup_neibouring_cubedistance_checkcall_with_neiboursalways_call_with_neiboursFreeVectordump_matrixargv2dvectrotate_v_around_z_to_xnrmkrotmatdirection_from_2vectsnrscalenrsumnormalizenrcopymidpointnrrotmatmult33nr_rotate_to_z_axisdump_vectorGraphicsVector3dCrossGraphicsVectorKludgeArrowsecond_from_firstgraphics_vectorsatom_vectorangle_on_planedist_on_planevectProjectPtToSegmentnreqPtsOnLinenrd_pdbrd_pdbpdbdebugnprt_pdbrecnwrt_pdbnwrt_diawrt_pdbnwrt_pdbselwrt_pdbselSimpleWrtAtomSimpleWrtAtom2Nselectpdb_selectpdb2vectcentroidresidue_typesfind_atom_definition_1handle_missing_atom_definitiondumm_residuedefault_atomdefault_C_atomdefault_O_atomdefault_N_atomassign_dummy_atom_definitionfind_atom_definitionfind_residue_typeresidue_type_numberalloc_residuemax_resuidue_typeread_residue_atomsread_residue_definitionstraverse_residue_definitiontraverse_all_residue_definitionstraverse_atom_definitionsread_standard_volumesread_standard_volumes_ntShowAllResidueTypesmodel_numberread_nmr_filescheck_sulphur_bridgesdeal_with_disorderinvert_the_scalerecord_typesfind_record_typecopy_all_recordrecord_ssbondaction_flagcheck_for_nmrrecord_headerfile_headerstart_modelrecord_end_modelrecord_crystcurrent_filerecord_scaleother_type_functionsmaybe_call_specific_functionadd_suphur_bridgesmax_sg_atomsg_atomsrecord_sg_atomread_recordread_pdb_fileopen_and_read_pdbrepeat_read_pdbopen_for_repeat_readwrite_pdb_headerwrite_pdb_recordwrite_pdb_fileopen_and_write_pdbopen_pdb_stdinreference_volumeresidue_molecular_weightresidue_frequencymaybe_read_reference_volumefree_file_residuesallocate_residue_recordmake_residuestraverse_residue_atomstraverse_file_residuestraverse_file_protein_residuesresidue_by_numberfind_atom_in_residuefind_atomnext_residuefind_atom_residueselect_allrd_richards_RAD_volumewrtsel_richards_RAD_volumerd_richards_RAD_areawrtsel_richards_RAD_areasum_per_residuesum_per_residue_prop1000set_atom_selection_onset_atom_selection_offturn_selection_onturn_selection_offsetup_flags_from_fileselect_residues_for_calculationselect_atoms_for_calculationselection_argumentresidue_selection_argumentresidue_selection_filesetup_selectionselect_protein_atomsignore_water_atomsignore_hetatmignore_hetatmsshell_with_not_contactnot_contact_cellfill_not_contactmaybe_water_cellcheck_cavities_againmaybe_cavity_cellmodified_cavity_cellcheck_for_cavitiescheck_in_vdwvoid_cellgenerate_shell_gridincrement_water_countergenerate_dumm_waterwater_shellgenerate_shellshell_mulecule_radiusInitStatsDumpStatsNDumpStatsIncrementStatsIncStatsWithWtsReComputeDerivedStatsReComputeDerivedStats2two_piinsert_arcsum_of_arcszstepsetup_plane_datacalculate_atom_surfacecall_calculate_atom_surfacecalculate_surfacesymm_filenamefind_symm_filenamefree_space_groupread_coordinate_specread_operatorread_symmetry_operationsfind_space_groupfill_space_groupfractionalize_atomun_fractionalize_atomfractionalizeun_fractionalizeswapnonfatalpushpopranffillarraysleep_while_fileprt_timedebuggingprint_an_atomserious_errorgive_warningwarningsoft_warningnth_atomatom_by_numberatoms_distanceis_cbis_cais_cis_nis_oisCAorPmaybe_freestream_from_stringmalloc_and_zeronew_stringread_residue_specmaximum_xmaximum_ymaximum_zmaximum_rminimum_xminimum_yminimum_zminimum_rvsumby3vsumsqrdvdotvdotby3vminvmaxvminbyvmaxbyvsumbyvsumsqrbyvdotbydvdivvxformgatherdgathermgatherludcmplubksbluinvrtludete_argcnext_file_argumentd_getopte_argvprint_options_messageinitialize_selectioncommand_line_argdo_initializationcommand_line_optionread_next_fileread_next_file_checkedread_next_file_and_checkread_all_filesdouble_from_optionFlagAllAtomsInCYSAtomIndexInFilePrintFieldSubsPercentSubsTildestring_from_optionWriteExtendedRecordwrite_pdb_allWriteExtendedFiledebug_resprevious_residueNtermOK_atomswitch_onswitch_offnew_read_standard_volumes// 224 ` AvgOverResidue.o/ ExtraAtomRecords.o/ HandleOptions.o/ LucianoHelixAxis.o/ ModifiedVolume.o/ MoreExtraAtomRecord.o/ More_atom_types.o/ ResidueLinkUp.o/ SelectParsers.o/ exclude_files.o/ mbg_RotTranCoord.o/ yh_commandline.o/ ystats.o/ 975708156 6685 165 100644 2892 ` ELF4( UPЉR          USEEEEEUEM E EUEE EEuUEE EUEE EEuUEE EUE] E M  E]ÉU=uEEDEDEuD<7EuD<7~ÍvUEE;|EPEÐUE;|7=t&PPEEE;E|vEPEÐU VSE<EUUE]UEE5}~?UEMEEHP$$e[^UEE;E|EPE 01.01d~QJGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@#! |  +d1l6l<D=M  | )2KRZ`gqx/o$+ystats.cgcc2_compiled.max_measurementst_countinit_measurement_vectorsmallocst_meanst_sdst_topst_bottomst_sumst_sum_sqadd_measurementinit_measurementinit_all_measurementsinit_some_measurementsfreesum_measurementsqrtsum_some_measurements   # 4 > C R Z_ nv{    3Vr   0Nl       7 P f little-nr.o/ 975708163 6685 165 100644 3032 ` ELF4( UhPEPhP jÍvUE U)ЍPPE}u hEU)ƒvÉUE U)ЍPPE}u h4EU)ƒÐUWVSE U)Ѝx}EU)Ѝx}E@RE}u h`EE)EEEPP‰ЋU U EE<u hUUMM<<UU] ]uu}4< )<}G}E;E ~7UUMuN]ލ9߉<E뿋Ue[^_UWVSE U)Ѝx}EU)Ѝx}E@RE}u h`EE)EEEPP‰ЋU U EE<u hUUMM<<UU] ]uu}4< )<}G}E;E ~7UUMuN]ލ9߉<E뿋Ue[^_UE UBPÉUE UBPÉUVSU UMˍ 4PRE UBPe[^UVSU UMˍ 4PRE UBPe[^UE U)ЍPPE}u hEU)ƒ&ÉUE UBP01.01Run-time error... %s allocation error in vector()allocation error in dvector()allocation error 1 in matrix()allocation error 2 in matrix()allocation failure in ivector()GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@!  +X1X6X< D@=}M    9$+38<V?FSN`UH`]"in"{TDTZ"little-nr.cgcc2_compiled.nrerrorstderrfprintfexitvectormallocdvectormatrixdmatrixfree_vectorfreefree_dvectorfree_matrixfree_dmatrixivectorfree_ivector     & 0 Vin  -2 _ z  6m VectorList.o/ 975708177 6685 165 100644 8444 ` ELF4( UE$E$E$hE $E $E $hÐU}tCE $E $E $h2EP AE $E $E $hJEP ÍvU} t9E$E$E$h27E$E$E$hJÐUh jEjjEPjUEUPE@EPjUB } uhbEPE PEPUÉUEU@;Bu 1}EPUEEU E EU EEU EEM@ M$ EUPÐUEPREPhh EPhEEU;P~4EU @ REU REhÐUjE $E $E e$EP jE $E $E E$EP jE $E e$E $EP jE $E E$E $EP jE e$E $E $EP jE E$E $E $EP ÐUWVSE PEPËE PEPƋE PEPNjE PEPEE PEPEE PEPCNGUJUBH$]jE $E $E $EP jE$E$E$EP E$EPEPe[^_ÍvU}uht&EPhÐUhÉU} t/E$E$h-t&E$E$hÐUSEEE }usEEE@EEUMEEEUME}u t&}UEEUEE}~UEU ] ]E Eu(UEUMM EVUEU ] ]E Eu&UEUMM EEBv]ÍvUEU MEU MEU MUÉUjjppEEppEEppEE EEppPEppPEЉppP E]E]EpUp"]EpUp"]E]Eu E &E]EpUp"]u]EpUɋpu]Eu]Eu]hhh  h`hhx@jh s@jhE$E$hE$E$hhE$E$hE$E$h@Eppٽ|| t٭t۝p٭|pPhqEpp$Epp$hEpp$Epp$Epp$Epp$h$ÐUEPjE PjE$h E$E$hE $E $hhÉUhhhdjjhhhdjjh:hWhhhhhh,ÉUh9ÉU}tGE E$$h`Pt&E ÐULVSEEPJ9U~EU  UM2J$jjjjj]E$EU 0PPEU REMe[^ÉUhhEEEt&EU;P|EU UEPt}u;jE@8$E@0$E@($EP E[jE@8$E@0$E@($EP E}uhh6hhE&EP01.01line %9.4f %9.4f %9.4f to %9.4f %9.4f %9.4f ; Line %9.4f %9.4f %9.4f Move %9.4f %9.4f %9.4f VECTSDRAW_OBJECT_%s t %d 80 Begin_object %s End_object $@BeginObject A BeginObject %s EndObject %9.4f %9.4f L %9.4f %9.4f m G?VectorList.c%% %s [%d] PrintBoundingBox(): %% Use the following transformation to get the drawing to fit on US paper %% Beg_FitToPage %% %lf %lf translate %% %lf %lf scale %% End_FitToPage %% LineWidthScaleFactorBaseLine: %lf %lf %% ScaledLineWidthScaleFactorBaseLine: %lf %lf %% DrawnVectors: %d %% ZLimits: %lf %lf %%%%BoundingBox:%lf %lf %lf %lf @@~@̃@@@%4lf w S %%!PS-Adobe-2.0 EPSF-1.2 %%%%BoundingBox:%d %d %d %d %%%%TemplateBox:%d %d %d %d %%%%EndComments %%%%EndProlog %% The next line starts out the drawing with: %% 0 setgray 1 setlinecap 1 setlinejoin %% These are the setting used by MolScript 0 G 1 J 1 j %%%%Trailer CalcLineWidth(): Linewidth = %lf * z + %lf @MolustratorVectorsAIDrawCAofSelectionn != 0GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@!  + @ 1`6`< DF=M  (@',1sCJtYa{n|DgE/$&8c5C8N_L l |  c VectorList.cgcc2_compiled.Limits.24m.37b.38MolscriptDrawLineprintff_O_gdl_VectorfprintfO_gdl_VectorAllocateVectorListcallocdmatrixivectorstrcpyAddToVectorListO_gdl_PrintVectorListVectorList3dCrossVectorListKludgeArrowsecond_from_firstsqrtO_gdl_BeginObjectO_gdl_EndObjectAIPrint1VectorDrawingLimitsnrMidPointPrintBoundingBoxAIPrint1LineAISimplePrintHeaderAISimplePrintTrailerCalcLineWidthstderrAISimplePrintVectorsAIDrawCAofSelection__assert_fail.3 ej 49 mr   (5: {,gF  (- ^c  'S[{F  O W e m       ? G u z                "  < A      = B  V d u z              #  + 0  8 =  E J  R W  _ d  l q         &   JRi%"W)'/0 975708190 6685 165 100644 1232 ` ELF4( USEEU;P|;vEU UEUZtXtEUZtXtE븋]ÍvUEEE EEM)ʉÉUSEPEPUEU;P |SvUB$U UEEEU ]EEE$EP E뤍t&E@]01.01GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.comment@ ! +P1P6P<d=Ex  Hv!].`"H]gAvgOverResidue.cgcc2_compiled.DeselectFileComputeOffsetInAtomRecordStatsOnResidueDoubleInitStatsIncrementStats  CompareAtoms.o/ 975708203 6685 165 100644 4372 ` ELF< 4( UE x tU B_EE PRE PRE PRE PE PRE PE xu &PEP ‰ÉU EU "]EU "]EU "]EMEMEM$ÐUS}u6EEEPt#U u UqEPE PEP YEC]EU;P|4EU UEPt#U u UE1&]ÍvUjEPEP EjEPE P E}t }u_؋EUPxE PE PEXXEPEPEP EEPEPE P EÐUEEU E@(b(]EEU E@0b0]EEU E@8b8]EMEMEMEu!h,jGh9hH&EMEMEM$U@WEEHDž00+󫍅HDM00PM 00PM00P؃ D00PD00@bhhhhhM 00PRhM00PRhEM 0U0;P| t&M 0U,0 0,0@@00Qts@00Qx<@00Q<00Qݝ4@0݅40AXE@t,hjdh9h 00P@00@X$D00P @00PD00P<00PD00PD00P݅4$D00PhE D00@\$D00@$$h D00@ $D00@$h`D0D0@$J\$D00@,$hD00@\(U SEUt&}uEUZ( ] X(EP 0DistanceCompareCoordinatesSecondToFirst: Second DistanceFirst%-17s|%-12s|%-17s %-15s|%-12s| %-15s (d != a2->surface)%s [%d]: %s %s | %8.4lf | %s Number-of-Atoms: %9.0f RMS: %9.4f Max-Deviation: %9.4f Min-Deviation: %9.4f Avg-Deviation: %9.4f Num*RMS: %9.4f GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! h +16< D = M   z4<|gINbu4x}CompareAtoms.cgcc2_compiled.sprintfAtomShortFormsprintfnrDistance3DsqrtGetNextSelectedAtomEquivSecondToFirstAtomDistance__assert_failCompareCoordinatesSecondToFirstInitStatsprintfstderrfprintfIncrementStatsFlagOnEverywhereFlagOffEverywhereFlagOffForCAInChainSak       !  [xM{  .3qvConvertMat.o/ 975708215 6685 165 100644 984 ` ELFp4( U VSjjEE}~]E}~HUЉUUBMM]42E뷍&E뛋Ut&e[^01.01GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.comment@! +16<=)E  0(ConvertMat.cgcc2_compiled.nr33tofortdvector  /18 975708229 6685 165 100644 4032 ` ELFT 4( UjE@PEEE;E|Et&E Pj‰ЋU U EEEE뵍t&UÍvU$EUEUE U)щMEU)щM}hjhh!P}h.jhh!P}h?j!hh!PEE;E|VvEMMEMMEE MEE M܋EUEÍvUEEEUE EUE)ЉE}%hj5hh!EEP}%h?j7hh!EEPEt&EEE;E|`EEUEEEEEEEEEEЉEEEE]EuEEEEEÉUT44PE44PDžPE4P4;P|rE4P 444LL44PtL44PlHL44PttH44@ H44@ݝ@݅@Eu@L44@PEuL44@Pܥ@XXݝ8݅8$T44P L4݅84XHPoDž\P44PT44PÉUEEEPEt&EEUE;P|EEU EEEUEEEPtukEEEPlUEEEPttEEE@ EEE@]EEuEEUBHuEX@ECvÉU h`EhdEPEE@$hgjihhsPE@ $hjjhhsPEEU;P|TvEU UEPtu*EPlUEUJttUB UBXHEÐUEhEPhE PhEPE@ E@ E@ E@E@E@@@D?E@H@LEUMQ8R0X(UUEE U;P|E U UEU;u]EU@:BuOEU@;BuAE PE Pt%EPEPt UEj1t&01.01ERROR! n <= 0ExtraAtomRecords.c%s [%d]: %s ERROR! Binc <= 0ERROR! Ainc <= 0dV(\X@CYSSGad->eradius%s [%d]: %s = %f ad->eradsqATOM RESATMGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@!  +16<(D= M    "#y8?| QX`syt$ExtraAtomRecords.cgcc2_compiled.InitExtraAtomRecordscallocCopyAtomVects2To1stderrfprintfThresholdAtomVectsdVToBInitStatsFlagAllAtomsInCYSIncrementStatsDumpStatsBDivRefVToOccRefVToBfind_residue_typefind_atom_definitionInitDummyAtomstrcpyfind_atom_in_fileStreqWithSpaces 7             4gl     FixWater.Lib.o/ 975708241 6685 165 100644 2068 ` ELFl4( Ujjjj\EXXЍEPݝhXЍEPݝpXЍEPݝxXЍEPܥh]苕XЍEPܥp]XЍEPܥx]XЍMAXʍ UJܥh]XЍMAXʍ UJܥp]XЍMAXʍ UJܥx]EPEPEPEPEP EPEPEP EPEPEP\P\PDžXE X;|XЍEܥh]苕XЍEPܥp]XЍEPܥx]\PEPXЍEEXЍEPEXЍEPEX01.01?GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! p +16<D=M$  $'/<OfpFixWater.Lib.cgcc2_compiled.fixwat_dmatrixNR_NormalizeNR_perp_dir_1eq2x3NR_MakeMat1WithVect234TransposeVectRotate_1by2 KS  1 E ` o /38 975708254 6685 165 100644 5776 ` ELF 4( U SEEPhPPEt&EH9E|7t&PEE Ru]C]E뾃}tEM 1ÉU EEPhPPEE;E|8PEE RuEE뾋EPEPhPUÉUEPE PEP E}t$EPEPhPU$"EPEPh8PUÍvU @EPE PEP t-PEPhSP(EPEPhmP8-uZE8ru"hP(E8wuhP[&EPPuhPhPPPhPÉU EPE PEP E}t7EP]E$EPhPE(&E$EPhPEÐUEPEPuht&E PEL@RtEEP@t9EP@RE PhPEP@R‰$넋EPE Ph3PUÐUEPEPuZt&E PEL@Rt7EP@t+E@X$E PhMPE@X-E$E PhgPEÉU }um} ughhthhP 't&hhhhP1}uj} tdhhtE PhP #vE PE PhhPU EPun} uhhht hhP 'hhEPhP1*%vEPun} thhht E PhP &&E PE PEPhPU EP} hEPPt$EPPhP +EPPhEPhPEP‰t&EP} E PEPPPPPhEPPtPhP $PE PEPhP&$hhh hPU W}u 1E8{uE@P‰E8$tEPj‰E8$E1󫍶EUЀ8t#EURh)uEɋE@PPEHEUPP‰01.01-[T/F Option ] -%s = %d [New String ] -%s = %s [Default String] -%s = %s [Use New Value ] -%s = %s[Use Default ] -%s = %s[ Opening stdin ][ Opening stdout ][ File Open Failed ][ Opened File ]%s %s [New Double ] -%s = %f [Default Double] -%s = %f [New String ] %s = %s [Default String} %s = %s [New Double ] %s = %f [Default Double} %s = %f NULL[GetEnvAndJoin ] No expansion of %s [GetEnvAndJoin ] $%s%s --> %s Fell ThroughHandleOptions.c%s [%d]: %s }[]()*&^%$/#.@|GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@ !  + 1 6 < 9 DY = M   , 07>EOV^Xmpj4h %HandleOptions.cgcc2_compiled.ReturnArgvMatchstrcpystrcatstrcmpArgvMatchstderrfprintfStringAfterOptionFileAfterOptionsprintfstdinstdoutfopenDoubleAfterOptionatofStringAfterKeyInDBInitLexerTokenizeLineStrEqSaveStringDoubleAfterKeyInDBGetEnvAndJoingetenvExpand1stEnvVarstrchr" - i    ;@Fk  8D_jvG ^v{"4LQWp|*/4BGLRafkpu{#16;AQV_dj!*5GRW]kv  %:?E`ek J O !t  /55 975708262 6685 165 100644 4832 ` ELF4( UtSEEDž(Dž,Dž Dž$DžDžDžDžDžDž DžDžDžDžDžDžEE;E | &UE݅(ݝ(UEЉ݅ ݝ UEЉ݅ݝE E ݅(ݝhE ݅ ݝ`E ݅ݝXݕݕ ݝ(EE;E | EU]ٍMܥhUMAMʍ UJܥ`UMAMʍ UJܥXUE݅(ݝ(UEЉ݅ ݝ UEЉ݅ݝEU]ٍM ݅ݝUMAMʍ UJ ݅ݝUMAMʍ UJ ݅ݝEU]ٍMY ݅ݝUMAMʍ UJ ݅ݝEA݅ܥݝ݅ܥ݅ܥ݅܍$݅݅ݝ݅܅]݅ܥݝ݅ܥ݅ܥ݅܍$݅݅ݝ݅܅]EM܍܅Eݝ݅܅܍EMEMݝ8EM܍܅Eݝ݅܅܍EMEMݝ0݅8ܝ0Eu u]u]݅ܥݝ݅ܥ݅ܥ݅܍$݅݅ݝ݅܅]݅ܥݝ݅ܥ݅ܥ݅܍$݅݅ݝ݅܅]EM܍܅Eݝ݅܅܍EMEMݝ8EM܍܅Eݝ݅܅܍EMEMݝ0݅8ܝ0Eu u]u]EMEM$]ȋEEuȋ]E(Euȋ]E@uȋ]EE;E |UMAMʍ UE Mʍ UJE Mʍ UJE ]EEus}umUMAMʍ UJE]E]E]EEEu]EM$]ȋEuȋ]Euȋ]E0Euȋ]EE;E | &EU]ٍME ]ٍMYE ]ٍMYE EQEMEMEMEM]EMEu]EMEM$]ȋEuȋ]E Euȋ]E8Euȋ]EE;E | t&UMAMʍ UE Mʍ UJE Mʍ UJE EJDžxDž|EE;E | t&DžpDžtEt&}~xUMэыEȉM]ˍ ʉM ݅pݝpE뇍&݅p$݅xݝxEE ݅xݝx݅x01.01@@GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! P +16<D(=eMl  2#-LucianoHelixAxis.cgcc2_compiled.transformsqrt qy  -5J Q      {  } MakeNewAtom.o/ 975708273 6685 165 100644 4348 ` ELF 4( US}u1D?&EPw 1EPE}&hj h7hEPE UE U} t$EEffu vEEhE]]EEUjEPEP E@ EPhREP jEPE P E 8 jE PEP EE8SuRsMakeNewAtom.cgcc2_compiled.MakeNewAtomstrlenfind_record_typestderrfprintf__ctype_bmallocstrncpysscanftolowerfind_residue_typefind_atom_definitionConstructNDummyAtomscallocmake_residuesLinkUp_Residues_AtomsFreeFileRecordsWithOutFreeingAtomsfreefree_file_residuesJoinFileRecords_1then2MoveSelectedToDerivedFileRecordNewFileRecWithOutWaterOrSymChainfirst_water_typesecond_water_typeNewFileRecWithOutWater% E [bgl r  8\.|5Ao 9]i$ JZ /75 975708289 6685 165 100644 7460 ` ELF 4( Uhj hh*P$$PPh@P PPhPÉUSEEEjjEPjEE;E|E)] É]Ex4Ex8uEEEE;|UЍ;Ut!P;UtP;Ut.v@$E EEp tEPhP }EPhj ;EuPEt&E;E|vE;tBEP;t"EP;tE Eh@$@$PPjjEE;E|c;Eu8P;uPt&P>;u0P;UuPPEE;E|fEx$u:;t(P;tP;tt&E됋E;EuEPhj PPPEPݝE܅]䋅PPjj ݅$ЉЉЉЉډPЉЉЉЉډPЉЉЉЉډPh P@$EPPjjE/EEXPEUPpjjEPj|ÍvULSEEE@(]EEE@0]EEE@8]EEEEEPE EEPEEEP EvEEE;E|PEEM+UEUU REEEP=u ~E뤍t&EEEE;|UUeUEEEЉE؋E؉EE@ e]ЋE؉EE@e]ȋE؉EE@e]EMEMEM]E]EuE]ܡ E}'E؉EE@$E؉EE@$E؉EE@ $E؉EEPE E+UщEUUUUUUډEEPE؉EEPE E+UщEUUUUUUډEEPE؉EEE E+UщEUUUUUUډEEPEEEPh@EEP0E؉EEB4E؉EEPB4E؉EEPB4EEEu EEEPhoj !]E܃$[X]ÉU"PEPE PEPEEPPEP }#E@P@TE@pEPPEP ÍvUEu @E EEEEjjjEEEPjEEEP$EEEP hhEEEP USEEEUE;P| '&EEU EEEUEEEPlUEEEPEEEPRE EEPEEEPRhEEPEEE@($EEEP0REEPEEEP0RhEEPEEVUUUE])ىʋE)ЉE}uhEEPE]ÍvU"S tNhhhh*PEPEPEPRE PhP}~hhhhPEPE PEPE h@h$hh*PPEPEPRE PEPRhPEPhh(hhPEPPEP } E@P@TE@pVv=tEPPEPӃ .EPPEP EPPEP ÐUEu @E EEEEjjjEEEPjEEEP$EEEP EEEhhEEEP 01.01PrintVolumeParameters():ModifiedVolume.c%s [%d]: %s CalcVHookFcn= %5d the_method= %1d volume_max_distance= %7.4f distance_check= %7.4f vertices_count= %4d plot_file= %d Neighbour %d Less than 3 vertices for a neighbour Did not find third_vertex %d %d %d %9.5Lf %2d %2d %2d %2d %9.5Lf %9.5Lf %9.5Lf Furthest vertex too far [%4.4d %s%3.3d:%4.4s %2.2d %4s %4.1f] NN_calculate_atom_volume():Central atom is %s%3.3d:%4.4s NN_calculate_atom_volumeneibour_count < 1000About to call N_calculate_vertices()with atom= [%4.4d]%s%3.3d:%4.4s neibour_count%s [%d]: %s = %d GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@R!   +16< D=M  p!-:zPW_n|5V3CPU m T Q" ;I[ ModifiedVolume.cgcc2_compiled.global_fileCalcVHookFcnPrintVolumeParametersstderrfprintfdistance_checkvolume_max_distancethe_methodplot_filevertices_countN_calculate_volumeSaveAtomVerticesverticesdebuggingserious_errorwarningtet_volumeN_calculate_verticesgenerate_initial_dummy_verticesprocess_neiboursoft_warningsqrtN_calculate_atom_volumefill_atoms_for_volumeN_Calculate_Volumessetup_file_recordssetup_minmax_xyzrsetup_neibouring_cubecall_with_neibourstraverse_file_atom_recordscompact_print_fileatom_type_nameNN_calculate_atom_volume__assert_failLoopOverNeighborsNN_Calculate_Volumes   $0;A GL R Z`fk q %  Amu$) / vmv9\a m )  E         " # * $2  7 < %K &     (9 >  J                 % * *G  T d n s x  ~   '         2  J  e | +       " #$" 05):%I&/93 975708302 6685 165 100644 5332 ` ELF` 4( U8EEȋEȋUEEȋEȋUEEȋEȋUE EȋUE)ЉEEEȋUE)ЉEEEȋUE)ЉE} %hjhh$EȋEP}%h1jhh$EȋEP}%hBjhh$EȋEPEt&EEȋE;E |EEȋUȍEȋEEEEEȋUȍEȋEEE܋EEȋUȍEȋEEE؋EEȋEȋEEȋEЉEԋE܉EȋEȋEEȋEЉEЋE؉EȋEȋEEȋEЉE̋ẺEȋEE@tEԉEȋUЋM1EEԉEȋE@EÉU8EEȋEȋUEEȋEȋUEEȋEȋUE EȋUE)ЉEEEȋUE)ЉEEEȋUE)ЉE} %hj;hh$EȋEP}%h1j=hh$EȋEP}%hBj?hh$EȋEPEEEȋE;E |EEȋUȍEȋEEEEEȋUȍEȋEEE܋EEȋUȍEȋEEE؋EEȋEȋEEȋEЉEԋE܉EȋEȋEEȋEЉEЋE؉EȋEȋEEȋEЉE̋ẺEȋEE@tEԉEȋUЋM EEԉEȋE@EÉU4SEUEUEUE U)Ӊ]EU)Ӊ]EU)Ӊ]} hjahh$P}h1jchh$P}hBjehh$PEE;E |E]É]E]É]܋E]É]؋EE]ԋE܋E]ЋE؋E]̋EԋUЋM!Etv]ÍvUE%t&E PtuE Ptu E PUE PRE PREPE PE PRE PE xuSiPEP hEPEvE;E|6EUэD $hEPEhEPÐUEE U;P|AEPEPEERE U REPE뵍vÉU EEU;P|1EU UEPlUEUBXHEÐÉU EEU;P|AEU UEPlUEUBX@EUBXHE뷐t&ÉUSEEU;P|PEU UEUBH}] ]m]Mmʅ}R$XHE맍t&]ÍvU EEE%t0E PtuE Ptut&TOE x tU BEEE PRE PREPE PE PRE PE xuSiPEP hEP}~"hhhh$PEE;E|2EUэD $hEPEŐE}~HEUэ<t)EUэRhEP EhEPÐUEEhhEP EE;E|!EPhEP EۍhEPEE U;P|BEPEPEPEERE U REPEÍvUEUE U)щM}"hhhh$P}"hBhhh$PEE;E|6EMMEE MEEEÉUS}uhhhh$E} ~6E$E PEUэJ  PEPE‹]01.01ERROR! n <= 0MoreExtraAtomRecord.c%s [%d]: %s ERROR! Binc <= 0ERROR! Ainc <= 0%4.4s%c%3.3s %c%4d%c %3.3s%c%3.3s %c%4d%c || %8.3f Off the edge.... you asked me to print too much... %6s # %19s %7dDefaultInitExtraAtomRecordsToScalare != ((void *)0)GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@; !  +| 1| 6| < 5 D = M  L&?FNkQ84^N^DqL   w>MoreExtraAtomRecord.cgcc2_compiled.DivideAtomVects_1eq2Div3stderrfprintfMultiplyAtomVects_1eq2times3SubtractAtomVects_1eq2Minus3WriteExtraAtomRecordWriteExtraAtomRecordsRadiiToBCovVDWRadiiToOccBAbsBWriteLargeExtraAtomRecordWriteLargeExtraAtomRecordsScalarToAtomVectsDefaultInitExtraAtomRecordsToScalar__assert_failjqv{      ^ejo {     18=B H V]bg m {     !* KR\ dm {   # ,  9 B  Y ^ g      . 8 = B  H  V ` e j  p     * /116 975708315 6685 165 100644 4508 ` ELF 4( UE}w~ t&E M}uqE$E$E$EPEPh$Eet&ÉUEPh8P uhPXP`PpPh8PTTT8Ph'j pPTT݅hT݅XT݅`h`P01.01%3d %8s %7.4f %7.4f %7.4f %s%lf%lf%lfSomething wrong in atom typeGLY 4 O O1 C C3 CA C4H N N3H ALA 5 O O1 C C3 CA C4H N N3H CB C4HHH VAL 7 O O1 C C3 CA C4H N N3H CB C4H CG1 C4HHH CG2 C4HHH LEU 8 O O1 C C3 CA C4H N N3H CB C4HH CG C4H CD1 C4HHH CD2 C4HHH ILE 8 O O1 C C3 CA C4H N N3H CB C4H CG1 C4HH CG2 C4HHH CD1 C4HHH PRO 7 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD CPRO MET 9 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH SD S2 CE C4HHH PHE 11 O O1 C C3 CA C4H N N3H CB C4HH CG C3 CD1 C3H CD2 C3H CE1 C3H CE2 C3H CZ C3H TYR 12 O O1 C C3 CA C4H N N3H CB C4HH CG C3 CD1 C3H CD2 C3H CE1 C3H CE2 C3H CZ C3 OH O2H TRP 15 O O1 C C3 CA C4H N N3H CB C4HH CG C3 CD1 C3H NE1 N3H CD2 C3 CE2 C3 CE3 C3H CZ3 C3H CZ2 C3H CH2 C3H CEH2 =CH2 SER 7 O O1 C C3 CA C4H N N3H CB C4HH OG O2H OG1 =OG THR 8 O O1 C C3 CA C4H N N3H CB C4H OG1 O2H CG2 C4HHH CG =CG2 ASN 9 O O1 C C3 CA C4H N N3H CB C4HH CG C3 OD1 O1 ND2 N3HH GLN 10 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD C3 OE1 O1 NE2 N3HH CYS 6 O O1 C C3 CA C4H N N3H CB C4HH SG S2 HIS 10 O O1 C C3 CA C4H N N3H CB C4HH CG C3 ND1 N3 CD2 C3H CE1 C3H NE2 N3H GLU 10 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD C3 OE1 O1O2H OE2 O1O2H ASP 9 O O1 C C3 CA C4H N N3H CB C4HH CG C3 OD1 O1O2H OD2 O1O2H ARG 11 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD C4HH NE N3H CZ C3 NH1 N3HH NH2 N3HH LYS 9 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD C4HH CE C4HH NZ N4HHH ZN 1 ZN Z2ION HEM 39 FE FE CMA C4HHH CMB C4HHH CMC C4HHH CMD C4HHH CAA C4HH CBA C4HH CAD C4HH CBD C4HH CAB C3H CH C3H CAC C3H CBC C3HH CBB C3HH NA N3 NB N3 NC N3 ND N3 O1A O1O2H O1B O1O2H O1C O1O2H O1D O1O2H C1A C3 C2A C3 C3A C3 C4A C3 CGA C3 C1B C3 C2B C3 C3B C3 C4B C3 C1C C3 C2C C3 C3C C3 C4C C3 C1D C3 C2D C3 C3D C3 C4D C3 ACE 10 CH3 C4HHH ASH 1 WAT 2 O OWAT OW =O HOH 2 O OWAT OW =O DOD =HOH DUM 20 OT O1O2H OXT O1O2H OT1 O1O2H OT2 O1O2H OE O1O2H NT N4HHH Z Z2ION DUM DEFAULT NDUM N4HHH ODUM O2H CDUM C4HH GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@!  +16<@P D = M`  4"1AM[dk&{More_atom_types.cgcc2_compiled.WriteAtomTypesatom_type_namesatom_chargeatom_covalentatom_vdwprintfUpdateAtomTypesfgetssscanfserious_errorfind_type_definitionstream_from_stringread_residue_definitions- M g   9@On   NFracSurf.o/ 975708328 6685 165 100644 5056 ` ELF4( UE P5RE P0RE P4RE PhE P,Rhh EP$E P$RE P(RE P RE PRh"EPE xt.E PBPE PPE PRh:EPhSEPE xtjE PREP ÍvU S} E xE x E xE x}tU BU JYtXtU BU JYtXt}tU B U J YtXtU B U J YtXt}tU BU JYtXtU BU JYtXt}tU BU JYtXtU BU JYtXt}tU BU JYtXtU BU JYtXt}tU B U J YtXtU B U J YtXt}tU BU JYtXtU BU JYtXt}tU BU JYtXtU BU JYtXt6t&h`j)hhPE PP}ExEx ExEx}tUBUJYtXtt&UBUJYtXt}tUB UJ YtXtUB UJ YtXt}tUBUJYtXtUBUJYtXt}tUBUJYtXtUBUJYtXt}tUBUJYtXtUBUJYtXt}tUB UJ YtXtUB UJ YtXt}tUBUJYtXtUBUJYtXt}tUBUJYtXtUBUJYtXt6t&hj8hhPEPP}EP$EEPUEU;P |svEEU}tEUZtXtEUZtXt}tEUZtXtEUZtXtE농]ÍvUEPE PEPjE$E P$R } tEE P$EE PUE U;P |$EEUEUBXX@EϋEPE PEPjÐU$EE܋E܋PUjEE܋EPjEE܋EPjEE܋EPjEE܋EPhjEE܋EPEE܋E܋@E܋EPEE܋E܋RhjEE܋EPEE܋E܋HE܋EPEE܋E܋RhjEE܋EPEE܋E܋XE܋EPEE܋E܋RhjEE܋EPEE܋E܋PE܋EPEE܋E܋RE $EE܋EP EE܋EPEE܋E܋XE܋EPEE܋E܋REE܋E܋PE܋EPEE܋E܋RhjEE܋EPEE܋E܋XE܋EPEE܋E܋REEEEEjEE܋EPjEE܋EPE}~ t&EE܋E܍EE܋E܋U}EE܋E܍EE܋E܋UEE܋E܋EE܋E܉B$}uhhhhEt&EHE܋E9E|E $EE܋E܍EЉE܋U܃E܋EPEE܋E܍EE܋E܋REE܋E܍EЉE܋U܃E܋EPEhE $EE܋E܋REE܋E܋RjE $jEE܋E܍EЉE܋U܃E܋EPEE܋E܍EЉE܋U܃E܋EPTE1EEE܋UE;P|vEE܋U E܋E܋E܋UEE܋E@pEE܋UB@EXXEE܋E@X  E@t(EE܋E@P  E@tEE܋E@@@DvEE܋E@XE@tEE܋UMBPqXEXHEE܋E@H@LEE܋E@P]È@sEE܋E@@@D?JEE܋E@H]EuEE܋E@@@D@EE܋E@@@D@Ef01.01XRESIDUE%7s%4d %-4s %-4s%c%4d%c : %6d -> %6d : %8x %8x : %3s = %3d (%3d atoms) SelectTriPeptide(): r1->{ca,c,n,o} == 0NFracSurf.c%s [%d]: %s SelectTriPeptide(): r3->{ca,c,n,o} == 0Find_FracSurf_ForFilechain_residues[0]->file = fGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@ ! Hx +D 1D 6D <` ( D = Mp  <  -I]ev}@NFracSurf.cgcc2_compiled.SelectTriPeptideFind_FracSurf_ForTriPeptideNPrintResidueRecordfprintfwrite_pdb_recordstderrcalculate_surfaceFind_FracSurf_ForFileFlagOffEverywhereFlagOnForWatersScalarToAtomVectsCopyAtomVects2To1FlagOnEverywhere__assert_fail+09 ]f        bvR=l        NNCalcRatio.o/ 975708342 6685 165 100644 2700 ` ELF<4( U(EE؋E؃xhtSEE؋E؋PhE؋E;tEE؋E؋PhE؋E;t#E E؋E؋P0zht^E E؋E؋P0BhE؋E؋;t'E E؋E؋P0BhE؋E؋;tE E؋E@]EEEU؉U}tEE؋E؋PlBEE؋E؋PlB]}tE E؋E؋P0BlE؋E@E E؋E؋P0BlE؋E@]EEE]EU@E EEx8uSh hhLhZEEPEEEPlE EBEp=u'E EEPEEEPVQ=u4/=u]E EE@ ]EEEPlB ]E EEP0BlEE@ ]EEeE]EE=u0EEEPlE EBEp&=E EE@]EEEPlB]E EEP0BlEE@]EEeE]EE]=t2hhhLhZEEPEt&E EE@]EEEUU܃}tEEEPlBEEEPlB]}tE EEP0BlEE@E EEP0BlEE@]=t }uEEE]EEeE]EE]E01.01?@I'm here ! nd->protein in calculate_ratio()NNCalcRatio.c%s [%d]: %s calculate_ratio(): Using method 6! This is only for a test.?@GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@r!  +16< D=M   %0ASeltNNCalcRatio.cgcc2_compiled.flag.4CalcRatio7first_water_typesecond_water_typeNNcalculate_ratiostderrfprintfthe_method+ G RZ   "+3CEMW\amv/NNvolume.o/ 975708356 6685 165 100644 13144 ` ELFL%4( UE@$E@$E@ $hP E @$E @$E @ $hP ÐUSUeUEEEЉE E} EEE@($EEE@$EEE@$EEE$h@EEP(E EE@($E EE@$E EE@$E EE$h@EEP(EEE@($EEE@$EEE@$EEE$h@EEP(EEUEEEU EPEEUEPEEU MBIU MBIEEEU MIU MB EHEEU MIU MB EH]EEE$h`EEPjEEEP0REEP jE EEP0REEP jEEEP0REEP &e]EEUM ]AKM ]AKJ(UM ]A(KM ]AK(JUM ]A(KM ]AK(JuEX EEUM ]A(KM ]AK( UM ]KM ]A J(UM ]K(M ]A( JuEXEEUM ]AK(M ]A(K UM ]K(M ]A( JUM ]KM ]A J(uEX E}tOEEE@$EEE@$EEE@ $hEEP ]US ;EUЍ]Ѝ]EUB X EUBXEUBXEU EUJHEUJH]ÍvUE ;u0P;UuPPEE;E|fEx$u:;t(P;tP;tt&E됋E;EuEPhj {PPPEPݝE܅]=tPP ݅$ЉЉЉЉډPЉЉЉЉډPЉЉЉЉډPh P@$E=tPPEEEXPEUPp|ÉU"PEPE PEPEEPPEP }#E@P@TE@pEPPEP ÍvUEPUt t4t&}tEUJtHt}uEUJtHtÉUE EEEEu @jjjEEEPjEEEPEE} tKE EE;Eu$E$EEEP EEE jhE EEP $EEEP } tE EEPhhEEEP E EE;EtE EEPU EEEEE EEEEEUE@ZEu vÉUSEE``@(]E``@0]E``@8]E%5$}E Em]mE ]Eݝt݅t܅t]E%5$}E Em]mE ]Eݝl݅l܅l]E%5$}E Em]mE ]Eݝd݅d܅d] ``tUE$E$Eȃ$E$E؃$EЃ$h@``P8EE``;E| E``+```EEE``E ``UE``8tE``@8E``@(]EE``@(]EtxE``@0]Et\E``@0]Et=E``@8]Et!E``@8]Et rt&E``@8EE`U`P0E``@4E``@(e]E``@0e]E``@8e]EMEMEMݝ|E`E`E`E`XE`E`XE`݅|`X ]݅|$[E``PE``P$E``PE``PEhj %8.3lf %8.3lf %8.3lf ư>Dummy %9.5Lf %9.5Lf %9.5Lf d %9.5Lf dr %9.5Lf rat %9.5Lf pc %9.5Lf %2d %2d %2d %2d %9.5Lf %9.5Lf %9.5Lf Furthest vertex too far @Neighbour %d Less than 3 vertices for a neighbour Did not find third_vertex %d %d %d %9.5Lf limits x : %9.5Lf %9.5Lf y : %9.5Lf %9.5Lf z : %9.5Lf %9.5Lf %3d %9.5Lf %9.5Lf %9.5Lf %9.5Lf %9.5Lf ???GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@_!! - +!$1!6!<! D$=$M'  *  $8CR\shpt 8  " > >Q^ibz t V4,;Vl(JNNvolume.cgcc2_compiled.the_edgevolume_max_distancethe_methodvertices_countplot_fileplot_a_linefprintfgenerate_vertexverticesdebuggingstderrwrite_pdb_recorddelete_vertexprocess_neibourmark_for_additioncalculate_plane_constantprint_an_atomgenerate_initial_dummy_verticescheck_dummy_were_eliminatedcalculate_verticessoft_warningtet_volumecalculate_volumefputcserious_errorwarningcalculate_atom_volumefill_atoms_for_volumewater_model_modecheck_shell_resnumcalculate_volumesdistance_checksetup_file_recordssetup_minmax_xyzrgenerate_shelltraverse_file_atom_recordssetup_neibouring_cubeadd_file_to_neibouring_cubecall_with_neiboursfree_file_recordscompare_neibour_descriptorsminimum_xrintminimum_yminimum_zsqrtNNcalculate_ratioqsort(- 3_d j}   glx#,   )5 HE yR     < A G Q ^    G ^ u        =F s  ,1=      W t!$ :t{" ._ )$E%((#(<)P*_+&,(-.#/,023 2)1<\4bm3453 (065<DOWb~n6718 t  (!-!?!NRVects.o/ 975708367 6685 165 100644 8512 ` ELF|4( UlWjjjjE}1} uEPEPEE PEPE}uEPEPEEPEPEEPEPEP EPEPEP EPEPEPEPEPjjEP jjEP U}ÍvUjERjERjE RÉUE]E ]E ]E ]E$]E$]E$E]ЋUEM]EME]EEMUEME]EEMMUEME]EEMMUEME]EEMMUEM]EME]EEMUEME]EEMMU EME]EEMMU EME]EEMMU EM]EME]EEMUÐUEU  U U  U U  U EU  U U  U U  U EU U U U U U UÍvU E EE EE E]E EE EE E]E EE EE E]EEEEEEUÉUEUM EUM EUM UÉUEU M!EU M!EU M!UUEB?EBEBEBEB?EBE BE BE B?UÉUE]UU EEE]UU E EE]UU E EUÉUEU  EU  EU  vÉUEPEP$ÍvU EEEE;E ~EEE]Eۍt&E EÉU SEEEE;E ~6UU] ] E]EÍvE]ÉU,EPEP]EPE P]EEEvE;E~FEEe]܋EE e]EME]E뱐EEÉUEE;E ~,t&EE$h EhÐUUU UU U U UUUUU UUUUUU UUÉUEP]EUuEUuEUuUE UE UE UU ÉUEU M UM  EU M UM  EU M UM  Ut&ÉUEPE PEP EPUÉUE} t^E$EPEPEPEPE Pt&EPEPjEP‰&}tWE-EPEPEPEPEPt"EPjE PEP‰v,E6EPEPEPEPEPE`E$E$E$EPEPP$Ut&ÉUEPEPEP ]EPEPEP UEEEPE PE P ]EPEPEP UEEEPEPEP ]EPE PE P U EEEPEPE P UUR$EPEPE P UUR$EPEPEP UUR$UU U U U U UUEPE PE P EEPEPE P EEPEPE P EEPEPEP EEPEPEP EEPEPEP E UU U U U U UU$EE;E~E܍E ]E܍E]E܍E]EPEPU܍U EU܍UEU܍UEEhÉUVSEE;E~UU ] ] u UU] ]u UU] ]u Ese[^UWVSjjjjEjjEjjjjEUU UU U U UU U U U  U UU U U U U EPEPEPjEPE}~vUU MME}~AEM]] ]u< 9E븐EjjjjEPjjjjEPjjEP e[^_ÍvU(E EE]E]E]EPEPEt&}~ t&E U ]EU ]EU ]EMEEMEE MEEXÉUEEUEu'EEUEu EEUEu=EEUEu E EEPEEEPvtEEUEuWEEUEu:E EEPEEEPE EEPEEEPÉU SEEvEEE;E ~@UEU] ]E u EEEEE벉U]01.0195Fߑ?@%12.6f %lg%lg%lga streama stringthe default[Got 3x1 from %12s] ( %7.4f %7.4f %7.4f ) GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@ ! H +L1L6L<` D=-M4P  t *2H .[ r|> SH/xhlVT>%(-,V9fFSZ Pg >xD  NT  $x  *>|`tNRVects.cgcc2_compiled.Rot_ZtoU_YtoZxVdmatrixdirection_from_2vectsNR_perp_dir_1eq2x3NR_MakeMat1WithVect234Transposefree_dvectorNR_SimpPrintMat33NRVect_PrintNR_mkrotmatsinVectRotate_1is2times3VectRotate_1by2VectTranslate_1by2VectSub_1is2minus3IdentityMatrixNR_dotprodNR_lengthsqrtNRVect_MeanNRVect_SumSqNRVect_CovarprintfNR_NormalizeCopyNRVect3_1to2NR_cross_1eq2x3NR_GetXYZVectorfscanfsscanfstderrfprintfNR_CalcI33NR_CalcCovarMat33RotateXYZby1TranslateXYZby1DiagMatrix33matrixvectorjacparkfree_matrixfree_vectorCyclicPermuteVecMatPermuteEigenValsVecsSoLargestLastLargestElementIndex 8 O j     *=X`       "   < $Y #~  % #  % 8 &> 'g ~    -\5Vw-.-/R0f0v1!2o22NSelect.o/ 975708379 6685 165 100644 2336 ` ELFx4( U EPtUhEPP EEE#EtEPEPh EPEPh EE E#EtEPEPh &EPEPh EE4E#EtEPEPh EPEPh EEBE#EtEPEPh EPEPh EEQE#EtEPEPh t&EPEPh E EaE#EtEPEPh EPEPh E@Eoh|ÉUSEEU;P|pEU UExht"EPh;t.EPh;th~EPuEUZt ] XtE냋]ÍvUSEt&EU;P|svEU UExHt:ExDt1Ex1tEx2t Ex3t#ExHt ExDtEUZt ] XtE넍t&]01.01IGNORE_ATOM[%s-%2d] %s-%2d DONT_CALCULATE_ATOMMODIFIED_ATOMSULPHUR_BRIDGEMAIN_CHAIN_ATOMREJECTED_ATOMBURIED_WATER W10GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! 8 +X1X6X<lD=+M0   P )0AHXi{|NSelect.cgcc2_compiled.PrintAtomFlagsstdoutwrite_pdb_recordprintfFlagOnForWatersfirst_water_typesecond_water_typestrcmpFlagOnForHydrogens  0GL ^c t     16 G^c y~    ,<EQNinit.o/ 975708390 6685 165 100644 11860 ` ELF4( U}tehEPE}uEPhj 2vEPhP EPEP(}t @PP} tbhE PE}uE Ph@j /E PhP EPEPhPhhPhPhPhPhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEh EEhEEhEEhEEE}~EEۡX0$4@d\LP ,H8D ÐUjjj ÐU}tbhEPE}uEPhj /EPhP EPEP&}t@PP} tbhE PE}uE Ph@j /E PhP EPEPhPhhPhPhPhPhEEhEEhEEhEEhEEh!EEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEhEEh EEhEEhEEhEEE}~ '&EEԍvX0$4@d\LP ,H8D 01.01rFailed to open types fileReading types file %s C4 0.00 0.77 C4H 1.87 0.77 C4HH 1.87 0.77 CPRO 1.87 0.77 C4HHH 1.87 0.77 C3 1.76 0.77 C3H 1.76 0.77 C3HH 0.0 0.77 OWAT 1.40 0.77 OW 1.40 0.77 O1 1.40 0.66 O2H 1.40 0.66 O1O2H 1.40 0.66 N4 0.00 0.70 N4H 1.50 0.70 N4HH 1.50 0.70 N4HHH 1.50 0.70 N3 1.5 0.70 N3H 1.65 0.70 N3HH 1.65 0.70 S2 1.85 1.04 S2H 1.85 1.04 P4 0.00 1.10 O1N3HH 1.60 0.68 Z2ION 0.74 0.74 FE 1.70 0.70 DEFAULT 1.80 0.77 C4 0.00 0.77 C4H 2.00 0.77 C4HH 2.00 0.77 CPRO 2.00 0.77 C4HHH 2.00 0.77 C3 1.70 0.77 C3H 1.85 0.77 C3HH 1.85 0.77 OWAT 1.40 0.77 OW 1.40 0.77 O1 1.40 0.66 O2H 1.60 0.66 O1O2H 1.50 0.66 N4 0.00 0.70 N4H 2.00 0.70 N4HH 2.00 0.70 N4HHH 2.00 0.70 N3 1.50 0.70 N3H 1.70 0.70 N3HH 1.80 0.70 S2 1.85 1.04 S2H 2.00 1.04 P4 0.00 1.10 O1N3HH 1.60 0.68 Z2ION 0.74 0.74 FE 1.70 0.70 DEFAULT 1.80 0.77 Failed to open residue definitions fileReading residue definitions file %s GLY 4 O O1 C C3 CA C4H N N3H ALA 5 O O1 C C3 CA C4H N N3H CB C4HHH VAL 7 O O1 C C3 CA C4H N N3H CB C4H CG1 C4HHH CG2 C4HHH LEU 8 O O1 C C3 CA C4H N N3H CB C4HH CG C4H CD1 C4HHH CD2 C4HHH ILE 8 O O1 C C3 CA C4H N N3H CB C4H CG1 C4HH CG2 C4HHH CD1 C4HHH PRO 7 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD CPRO MET 9 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH SD S2 CE C4HHH PHE 11 O O1 C C3 CA C4H N N3H CB C4HH CG C3 CD1 C3H CD2 C3H CE1 C3H CE2 C3H CZ C3H TYR 12 O O1 C C3 CA C4H N N3H CB C4HH CG C3 CD1 C3H CD2 C3H CE1 C3H CE2 C3H CZ C3 OH O2H TRP 15 O O1 C C3 CA C4H N N3H CB C4HH CG C3 CD1 C3H NE1 N3H CD2 C3 CE2 C3 CE3 C3H CZ3 C3H CZ2 C3H CH2 C3H CEH2 =CH2 SER 7 O O1 C C3 CA C4H N N3H CB C4HH OG O2H OG1 =OG THR 8 O O1 C C3 CA C4H N N3H CB C4H OG1 O2H CG2 C4HHH CG =CG2 ASN 9 O O1 C C3 CA C4H N N3H CB C4HH CG C3 OD1 O1 ND2 N3HH GLN 10 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD C3 OE1 O1 NE2 N3HH CYS 6 O O1 C C3 CA C4H N N3H CB C4HH SG S2 HIS 10 O O1 C C3 CA C4H N N3H CB C4HH CG C3 ND1 N3 CD2 C3H CE1 C3H NE2 N3H GLU 10 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD C3 OE1 O1O2H OE2 O1O2H ASP 9 O O1 C C3 CA C4H N N3H CB C4HH CG C3 OD1 O1O2H OD2 O1O2H ARG 11 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD C4HH NE N3H CZ C3 NH1 N3HH NH2 N3HH LYS 9 O O1 C C3 CA C4H N N3H CB C4HH CG C4HH CD C4HH CE C4HH NZ N4HHH ZN 1 ZN Z2ION HEM 39 FE FE CMA C4HHH CMB C4HHH CMC C4HHH CMD C4HHH CAA C4HH CBA C4HH CAD C4HH CBD C4HH CAB C3H CH C3H CAC C3H CBC C3HH CBB C3HH NA N3 NB N3 NC N3 ND N3 O1A O1O2H O1B O1O2H O1C O1O2H O1D O1O2H C1A C3 C2A C3 C3A C3 C4A C3 CGA C3 C1B C3 C2B C3 C3B C3 C4B C3 C1C C3 C2C C3 C3C C3 C4C C3 C1D C3 C2D C3 C3D C3 C4D C3 ACE 10 CH3 C4HHH ASH 1 WAT 2 O OWAT OW =O HOH 2 O OWAT OW =O DOD =HOH DUM 20 OT O1O2H OXT O1O2H OT1 O1O2H OT2 O1O2H OE O1O2H NT N4HHH Z Z2ION DUM DEFAULT NDUM N4HHH ODUM O2H CDUM C4HH DUMCDUMODUMNDUMWATHOHGLYALAVALLEUILEPROMETPHETYRTRPSERTHRASNGLNCYSHISGLUASPARGLYSAGUCGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@ ! "X + 1 6 < # D#=`Mh`   3 s)/=DL\cv )2;DMV_hqz t%,Ninit.cgcc2_compiled.initial_residuesfopenserious_errorstderrfprintfread_atom_typesfclosestream_from_stringread_residue_definitionsfind_residue_typedumm_residuefind_atom_definitiondefault_atomdefault_C_atomdefault_O_atomdefault_N_atomfirst_water_typesecond_water_typeGLY_typeALA_typeVAL_typeLEU_typeILE_typePRO_typeMET_typePHE_typeTYR_typeTRP_typeSER_typeTHR_typeASN_typeGLN_typeCYS_typeHIS_typeGLU_typeASP_typeARG_typeLYS_typeresidue_character_typesdefault_initializationinitial_residues_ntA_typeG_typeU_typeC_type  -4 EJ P \hx    ).39CHMS]bgmw| "',?DI\afy ~!"#$ %'&,1D'INa(fk~)*+,-.5/FK/P/UZ/_/di/n/sx/}///!// //"//#//$//%//&//)// .//-/"/',,/1/6+;/@/E'J/O/T(Y/^/c*h/m/~      #, CJ X] c o{ 16;NSXk2pu345#6;@SX]p uz!"#$ %   &# ( ; '@ E X (] b u )z   *   +   ,   -   .- /A 3F /K 2P /U 4Z /_ 5d /i n /s /x } / /  / /  / /  / / ! / /  / / " / / # / / $ / / % / / & / / )" /' /, .1 /6 /; -@ /E /J ,O /T /Y +^ /c /h 'm /r /w (| / / * / /RadGyr.o/ 975708404 6685 165 100644 2052 ` ELF4( U\EPUEPjEEPjEEPjEEPEPEPEPEEPEP]ԋEPEP]܋EPEP]EPEPE]EPEPE]EPEPE]EEEEMEMEM$]EPjEP EPjEP EPjEP EÍvUHSEPEPEP]E$E$E$hP E$hPEEU;P|EUԍ UЋE@(e]ȋE@0e]E@8e]]EMEMEM$[XEu]Eu]Eu]]EMEMEM$[PE@]01.01Centroid: %f %f %f RadGyr: %f GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! D +16< D =IMP@   U-5EQ^cpX=RadGyr.cgcc2_compiled.RadGyrFromStructuredvectorFileSelectToXYZNRVect_MeanNRVect_SumSqsqrtfree_dvectorDistScalDFromCentroidToSrfVCentroidFromStructurestderrfprintf ) < Y n      #5Ght 9~ReadRadFile.o/ 975708416 6685 165 100644 3496 ` ELFd4( U|}u 1EE UhEMMEEUjhEP E@ MAMEPEPEPEPEPEPEPEPEPEPEPEPEPEPh EP@EPhQECP EUPEPE PEPEP}u[E8Cu E@8 tFE8CuE@8Au E8 t(E8Ou E@8 tE8NuE@8 tME@ E@ E@ EUPEEX(EEX0EEX8EEX@EEXHE PUBhEPEPhRUBlEEXPEUPpEUPtUÉU Sh,jEEEE'jEPE荶EPhP u:EPt(h`jKhhP1o!hPtE}t t&k}uEPhP u EchPt E@PU U EE<u EE[t&EUPjEP‹EEE;E|'UMMMEϋEPEPE@EPUvU=uhhj EPhP h&EPE}uh@P1NLE PEPEEP}tEPUBE@ U01.01ATOM %5d%5d%3d%3d%6c%6c%5d%8lf%8lf%8lf%5lf%5lf%8lf%5d%8lfbarf! Bad RAD file format. Couldn't get started.ReadRadFile.c%s [%d]: %s BEGINTOTALdo_initialization was not called before reading a fileOpenReadRadFile(): Trying to read %s rOpenReadRadFile(): Unable to open file, returning NULL. GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! @ h +81868<`y D=M    "5<DKRdy$8 ReadRadFile.cgcc2_compiled.RadFileStringToNewAtommallocstrncpysscanfstrcpyfind_residue_typefind_atom_definitionReadRadFilecallocfgetsfeofstderrfprintfStreqWithSpacesfreemake_residuesLinkUp_Residues_AtomsOpenReadRadFiledumm_residueserious_errorfopenfclosenew_string0 Wc     &Nq4@^  @HMT`eks|ReadTraj.o/ 975708429 6685 165 100644 6016 ` ELF 4( U E EE}~7t&EPE}u EUЊUE1Uh_EPE_UÐU_;_|!EPE_׍&EPEP3ÉUEPE}u_E U1ÉU E EE}~Q_;_|@EPE}u"EUЊU_E뭍1ÉU E EEt&}~P_;_| Dt&EPE}u "EUЊU_E1t&ÉU E EE}~Q_;_|@EPE}u"EUЊU_E뭍1ÉUEE;E |P_;_|@EPE}u"EUЊU_E묍1ÉU(WVS=E܋URE܃}u K}}܋EPU܋}WE܋UR=}܋EPU U܋}WE܋UR}}܋EPU܋}W}Et&EE܋U;U|e}}܋EPU܋}WEE܋U܉U؋}}E`Mˍ ]`fuf<E؋Uf<EYEEE܋U;U|@}}܋E܉E؋U҉U܋}܁`}؋EPU܋}WE벉E܋UREt&}}܋E;E|.UU܋}}ػVUUUEы])߉}؋E؍ U܋U܋}܋<}؋E؉EUU܋}}؋M؍MEع`U UE(88ɋ}_(EE܋UBU؋}؍ }E`E Q$(88ɋUZ0}}܋EE؋U؍ UE`} 9Q$(88ɋEX8EvhhE܋U܉=u3h hhh)=}܋EPjU܋}WE E܋UR=}܋EPUU܋}WE܋URE&}}܋E;E|@UU܋}܉}؋EE܋U܁`U؋}WE܋URE볍v}}܋EPU܋}Wh E܋UR (h$=}܋EPE&}~;UU܋}܉}؋EE܋UUU؋}WE܋URE뽐Et&}~<}}܋E܉E؋UU܋}}}؋EPU܋}WE뼐Et&EE܋U;U|.}}܋EEػVUUUEы])߉}؋E؍ U܋U܋}܋<}؋E؉EUU܋}}؋M؍MEع`U UE(88ɋ}_(EE܋UBU؋}؍ }E`E Q$(88ɋUZ0}}܋EE؋U؍ UE`} 9Q$(88ɋEX8EU܋}W1e[^_UE PEPh@PDž<+<+;E|8+PhP h_h_8+PEP4+8+PhP E8+E_E_E_E_E_E_4+u&hhhh)P1<+&ÉU EE;E|it&ERh P h_h_EPE Pu&hhhh)P1E델t&01.01rfort.1Couldn't open fort.1ReadTraj.c%s [%d]: %s {Gz?ReadTrajWithSkip(): times=%d skip=%1d Before get_mdb_coords(): istep=%ld After get_mdb_coords(): istep=%ld The trajectory is exhausted. BrittSkip(): before get_mdb_coords() with istep=%ld GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@B ! p + 1 , 6 < U D =R MX  5 X$_,_3IP``T(Z _$d `j0uq_ y_ _ _ `JX/J>rzrxnx :+ ReadTraj.cgcc2_compiled.rget_intRecsizeRecposafter_first_record.18mdb.19IxkSclp1SclpSclwix.22ixb.23xmax.24xmin.25xmax.28xmin.29Coords_IO_getcnewrecordendrecordftget_byteftget_intftget_shortftget_floatftget_strget_mdb_coordsfopenstderrfprintfexitBrittReadTrajWithSkipBrittSkip%_v17Iq!'9a 1=EQZfxiv#6> F l      " ( - 3#?$I%R^q}  %1:DIO[     , 4  <  S _ h   # $  # $   !   # $ - ; F T b r  |   # $  # $   !       #% $/135 975708444 6685 165 100644 3620 ` ELF4( U EEEUE;P|2EEU EEEUEEE@ @$EEE@`EEE@dEEUE@(B(D@EEUE@0B0D@urEEUE@8B8D@uTE@EU@9Uu@EHEUH9Uu,EPEUP9UuEXEUX9Uu"hj0hh t&EÉU E P$EE UP8E @<}t EU Pv[1] == a->x && a->v[2] == a->y && a->v[3] == a->z && &(a->v[4]) == &(a->occ) && &(a->v[5]) == &(a->b) && &(a->v[6]) == &(a->volume) && &(a->v[7]) == &(a->surface)LinkUp_Residues_Atoms(): Residues not set up XRESIDUE%7s%4d %-4s %-4s%c%4d%c : %6d -> %6d : %8x %8x : %3s = %3d (%3d atoms) PrintAllResidues: Residues not set up NewPrintAllResidues: file->LinkUpResiduesFlag != 0 GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! H +D1D6D<` DT=M `    Z/=\OZelt@ZResidueLinkUp.cgcc2_compiled.VectorizeAtoms__assert_failLinkUp_OneResidueLinkUp_Residues_AtomsstderrfprintfPrintResidueRecordprintfstdoutwrite_pdb_recordPrintAllResiduesNewPrintResidueRecordNewPrintAllResidues18=B   2 _kpu  & !EJx} /152 975708456 6685 165 100644 3096 ` ELF04( USEEPthEL@RujEPjE PEPthEL@Ru\E@P}] ]m]mE@X}] ]m]mEUEU;P0u>EP Nm%s [%d]: %s=( %f %f %f ) EigenValsntipctipFindFitTranslationOnly(): Fixed (centroid)=( %7.4f %7.4f %7.4f ) FindFitTranslationOnly(): Moving(centroid)=( %7.4f %7.4f %7.4f ) FindFitTranslationOnly(): %6d = nFix != nMove = %6d GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! p +41464<`u D = M   e +2:J|`hth .;(Rcentroid.cgcc2_compiled.FileSelectToXYZstderrfprintfXYZToFileSelectCentroidFromStructuredvectorNRVect_Meanfree_dvectorHelixTipsFromStructuredmatrixTranslateXYZby1NR_CalcCovarMat33DiagMatrix33TransposeRotateXYZby1LargestElementIndexVectRotate_1by2VectTranslate_1by2CopyNRVect3_1to2free_dmatrixFindFitTranslationOnlyVectSub_1is2minus3  Zafk q  4FX~ *RY^c i   #/7EM[cs 0@ry~  Xhx   7 L ty      coord.o/ 975708520 6685 165 100644 19372 ` ELFB4( UEE;E|vUЍE D$UЍE D$UЍE $E@PE@Ph@EP(Ew&ÉUSEE;E |EU]ٍMMEU]ٍMDM\EU]ٍMDM\EZ&]ÍvUSEE;E |5EU]ٍMD\E]ÐUEE;E |vEMʍ U EMʍ UL EMʍ UL ]E Mʍ U EMʍ UL EMʍ UL ]EMʍ U EMʍ UL E Mʍ UL ]UЍEEUЍEE\UЍEE\Eut&ÉUVSEE;E |EU]ٍMuEU]ٍMuD\EU]ٍMuD\ENe[^ÍvUSEEE;E|E&E;E|wvEU]ٍM$EU]ٍM$ɋEU]ٍMDdEU]ٍMDdEU]ٍMDdEU]ٍMDd$]EU ]ٍM $EU ]ٍM $ɋEU ]ٍM DdEU ]ٍM DdEU ]ٍM DdEU ]ٍM Dd$]EeEeE]E|EYt&E]EEEHUR$$]E]ÉU$SUUU]EE;E |UЍEE]UЍEED]UЍEED]EU]ٍM EU]ٍMDLEU]ٍMDLE]EEMEMEME E]hUU?hUUUUExxE p$]EE $E]E]ÍvUdEM]EM]Ee$]E$eME]EEEEEuE$]t&E$]E]EEM]EEuGEEE]EEEEEEUEeE`EEukEEUEEEEEE]EEEEut&E]EEEEE$]E$E]E]E$E]؋EEE]EEEEEEEeE؋EEEEeeEu Eee؋E-%EEUMEEÍvUPE $E$E$E$EEEP $EEuE$]E$]E]EEuE]EEuE$]&E$]EEuE$EE]E$EE]E]E]EEE]EEuE$]E$]E]EÐUSE($E $E$E$E؉xxPu$EEu!E$]EE]!E$]EE]E]EEuE$]t&E$]EEu)E؃$E]EEE])E$E]EEE]E]EE]EEEuEE$]EE$]E] EeEuEe$]Ee$]E]EeEuEe$]Ee$]E] EEEuEE$ݝ|EE$ݝ|݅|tU0EPEP]EPEP]EPEP]EPE P]ЋEPE P]؋EPE P]UPEP]UPE PݝxEPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EݝEMEMEM݅Eݝ݅܅xݝEMEMEM݅݅ݝ݅܍ݝ݅Mݝ݅ME݅ݝp݅ME݅ݝh݅ME݅ݝ`݅Mݝ݅ME݅ݝX݅ME݅ݝP݅ME݅ݝH݅Mݝ݅ME݅ݝ@݅ME݅ݝ8݅ME݅ݝ0݅P܍0݅8܍H܍pݝ݅h܍0݅8܍`܍X݅ݝ݅h܍H݅P܍`܍@݅ݝ݅p܍p݅h܍h݅`܍`ݝ(݅X܍X݅P܍P݅H܍Hݝ݅@܍@݅8܍8݅0܍0ݝ݅(܅ݝ݅܅ݝ݅ݝ݅܍ݝ݅(܍݅ݝ݅(܍݅ݝ݅p܍X݅h܍P݅`܍Hݝ ݅p܍@݅h܍8݅`܍0ݝ݅X܍@݅P܍8݅H܍0ݝ݅ ܍ ݅ݝ݅܍݅ݝ݅܍݅ݝ݅ݝ U0EPEP]EPEP]EPEP]EPE P]ЋEPE P]؋EPE P]UPEP]UPE PݝxEPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EPE PEP ]EݝEMEMEM݅Eݝ݅܅xݝEMEMEM݅݅ݝ݅܍ݝ݅Mݝ݅ME݅ݝp݅ME݅ݝh݅ME݅ݝ`݅Mݝ݅ME݅ݝX݅ME݅ݝP݅ME݅ݝH݅Mݝ݅ME݅ݝ@݅ME݅ݝ8݅ME݅ݝ0݅P܍0݅8܍H܍pݝ݅h܍0݅8܍`܍X݅ݝ݅h܍H݅P܍`܍@݅ݝ݅p܍p݅h܍h݅`܍`ݝ(݅X܍X݅P܍P݅H܍Hݝ݅@܍@݅8܍8݅0܍0ݝ݅(܅ݝ݅܅ݝ݅ݝ݅܍ݝ݅(܍݅ݝ݅(܍݅ݝ݅p܍X݅h܍P݅`܍Hݝ ݅p܍@݅h܍8݅`܍0ݝ݅X܍@݅P܍8݅H܍0ݝ݅ ܍ ݅ݝ݅܍݅ݝ݅܍݅ݝ݅ݝEPEP(ÉU EEEPEEEPEEEPE EEPEEEPE]EuEvEÐU,WVS}'Dž$$~ Dž ~$; u] $ʍ ȉpD?[ $ʍ ȉpD v$t&}Dž&~FE]ȋEEȋ E(Eȋ ɋE U ]ЋE(Eȋ EEU ]؋EEȋ E(Eȋ ɋEU ]EEȋ EEU ]EEȋ E EU ]EEȋ EEȋ ɋEU ]EݝEEt݅ݝEEu݅]t+EܝÈ@r t&EݝEEt݅ݝEEu݅]t'EܝÈ@r t&pEЋUE؋UE苅pE苅UEUEEݝEEt݅ݝEEu݅]t#EܝÈ@rpE؋UEUEpE苅UEUEpˍ p Uˍ ] Uˍ ] $]ȋpˍ puȋUˍ ]uȋUˍ ]uȋDžDžDž  }u*DžDžDžDž (DžDžDžDž E]DžxDž|?EE?EE?EeEuEeݝ(Eݝ݅eݝEeEu/EeܝEt8CvEeܝEtEeEuEeݝ*Eݝ݅eݝE(eEu3E(eܝEt ˍ ]4} >鋅Uˍ ] 4p > ˍ ]4p >鋅Uˍ p 4} > ˍ p4} >鋅Džv~EEDž$$~j$ʍ ȉ($ ]4p >$uNލu 3$uN0ލu 3$ʍ ȉ(ˍ $4( E]$t&Eȃ$]ED@u hDž$v$~$ʍ ȉ(ˍ $4(uȋ$fut&݅@܍`݅H܍Xݝ8݅X܍0݅`܍(ݝP݅(܍H݅0܍@ݝhDž$$~"Dž t& ~$ эыEȉ$э( 4p $э0 4x $э8 4]  $Dž$t&$~$U $ ]$$<u>u  ዝ$ٍMYM  鋝$ٍMYM  E($@[^_ÐUWVSEhhWEhhW]EhhWEhhW]EhhWEhhW]EhhWEhhW]ЋEhhWEhhW]؋EhhWEhhW]UhhhhP}hhP]UhhhhWEhhWݝxEhhWEhhWEhhW ]EhhWEhhWEhhW ]EhhWEhhWEhhW ]EhhWEhhWEhhW ]EhhWEhhWEhhW ]EhhWEhhWEhhW ]EhhWEhhWEhhW ]EhhWEhhWEhhW ]EhhWEhhWEhhW ]EݝEMEMEM܍E܅xEMEMEM܍܍ݝDž~*Dž~hh<hʍ hȉh0ˍ 4]dd4E艅dEЉd> ܍܍ht&t&DžDž~}Džvhh;~Ahhhˍ 0dddd0d 7ˍ 8ddd<d8d 0ˍ @dddd@d 7h&zt&݅P܍p݅h܍X܍0݅8܍p݅h܍@܍H݅8܍X݅P܍@܍`ݝ݅܅܅(ݝ݅܍(݅ ܍ ݅܍(݅܍݅܍݅܍ݝ݅$݅$݅$݅$hhP$hhEhhWEЉhhWE艅hhW0hhWhhWhhWhhWE hhWEhhW$݅Eu!݅$ݝ!t&݅$ݝ݅ݝ݅Eu݅ݝ݅Eu݅$ݝ݅$ݝ݅Eu*݅$݅܅ݝ|*݅$݅܅ݝ|݅|ݝ݅ݝt݅t܅t݅ݝ݅Eu݅$ݝlv݅$ݝl݅lٝمX[^_@(#) coord.h version 1.1 (3/15/93)01.01@(#) coord.c version 1.2 (3/15/93)ATOM %6d CA ALA %4d %7.3f %7.3f %7.3f ?333333???Hz>P?P@LXz?@@degenerate rotation matrix in matrix() @GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@k@! G +@# 1@6@<A DB=MBMTDP  F # #(p.4 <( Hx#OW_fhSmzd0, &_5 coord.cgcc2_compiled.ident_hident_cpi.14solvejustrmsjustbothrmsmatrixfputpdbfprintfresizeinvertHinds_rotateHinds_translatedistrmssqrtlopsidepowacoscossinfitrmsvsumby3vsumsqrvdotby3bothrmsbestrmserrorbestfity   ' 7 ? p               M l         !LGb!7Mf     ! ; X u `h.AWm    $ A [ x  Q!@$--:2V2[2#55%6P6~6667Z7 7 7 8 U8 8 8 9 V9 =&===>>8?V???@?@dhinds_wrap.o/ 975708537 6685 165 100644 1988 ` ELF04( UEPЍREE EEU;P|EU UEPtuaU UMA(U UMA0\U UMA8\E EeE 8uhj h hPE ЍREPEUÉUTWSEEEPEPEEPEPE}1 EEEEPEPEPEPEP]E;EtEPEPh@PE}~EM щMEUUMMMM Ev}~iEMщMEU MUBUUM]]e]MڍM̉MM EE;&Ee[_@(#) coord.h version 1.1 (3/15/93)01.01*npts == 0dhinds_wrap.c%s [%d]: %s MyFit(): %6d = nFix != nMove = %6d GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! \h +# 1$6$<@d D=M  d#&&8?FNV(\dhinds_wrap.cgcc2_compiled.ident_hFileSelectToHindsmallocstderrfprintfreallocMyFitbestfit   G \   jacpark.o/ 975708544 6685 165 100644 4024 ` ELFl 4( UTWVSE EEPjEEEȋE EEPjEEEEEEE;E ~EEEE;E ~2UEUMEEEE뾋UEUMEEE?EiEEEE;E ~wUEUȋ] ]}4}EEEE47E EEEEEĉEEEyEEEEv}2~ t&EEE HEE9E~TE@EEEE;E ~8E܋UEUMEEE]EEED@uAE EEPjEĉEEP E EEPjEȉEEP }'E((ɋE E EE]EEE HEE9E~E@EEEE;E ~UEUMEEE00]Ѓ}EEEEEEE]EEEEEEE]ED@EEEEEEE]EEEEEEE]ED@u2UEUMEEEhUEUMEEEEE*UEUMME$]EE]EE]ED@u4UEUMEEEu]E88ɋUEUMEEE]E]EM$E]EEuE]EM$]EM]EE]UEU] EEEE ]ԋUEUċMMeԋEUEUċMMEԋEUEUMMeԋEUEUMMEԋEUEUMEEEEEHEE9E~ UEUMEEE]ЋUEUMEEE]ԋEEEM]EEMEMEEEEEM]EEMEMEEEE@EEHEE9E~UEUMEEE]ЋUEUMEEE]ԋEEEM]EEMEMEEEEEM]EEMEMEEEE@EEEE;E ~ t&UEUMEEE]ЋUEUMEEE]ԋEEEM]EEMEMEEEEEM]EEMEMEEEEEEE;E ~UEUMEEE]ЋUEUMEEE]ԋEEEM]EEMEMEEEEEM]EEMEMEEE&EEEEME(t&EEEE;E ~ t&UEUȋ] ]ȋu<u >EUEUMMEEEEEĉEEEdEdt&he[^_01.01Too many iterations in routine jacpark?Y@?GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@E ! Hp + 1 6 < @ D = M$  B E ")5:jacpark.cgcc2_compiled.jacparkvectorfree_vectorsqrtnrerror 3 = [ rz Y 1 6  errors.o/ 975708554 6685 165 100644 1640 ` ELF4( USE E=$t$ӡP=,t,Ph%P EPEPP P=(t(jv]@(#) errors.h version 1.2 (3/15/93)$01.01@(#) errors.c version 1.3 (3/15/93)%s: GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.rel.data.bss.note.rodata.comment@!  +8 1 ` ;@F@* Nj=Wp  P $!$)$2(=,E0Q4\bipwerrors.cgcc2_compiled.ident_hident_clock_errunlock_errcmdnameinfo_prefixinfo_limiterrorstdoutfflushstderrfprintfvfprintfexit%.6<AGW]ekt}0/169 975708566 6685 165 100644 3160 ` ELFT4( USE44Uf% fu 48u 4ʼn4U)Ӊ048t80PEP8P 8084 E4004ЍP:kuN04ЍP:ru804ЍP:bu"04ЍP:.u 0bv04ЍP:buI04ЍP:du304ЍP:pu04ЍP:.u00~/04ЍP:/u04Dž00uB44@ ‹4 ‹4 ʉ!EPhP j,ÐUEPEM UEPEM UEPh8P u &84t&4Uf% fu 4҉48t|404Uf% fu 48u 4뿋4} t0P0P t&ÉUh$EPE}uEPh&j E PEPÐUh:E}tjEPhBE}tjEPU EPE=tMEE;|(vE;Eu`E1WEt&EE;|"E;Eu1EѸv&01.01Wrong file name in encode_file : %srFailed to open fileincludeexcludeGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! ( 0 +T1\6\<J D=M    J +,6>EMRct,8 d8 G T"3@exclude_files.cgcc2_compiled.encode_file__ctype_bstrncpystderrfprintfexitmax_include_filemax_exclude_filerecord_exclude_fileexclude_filesrecord_include_fileinclude_filesread_include_exclude_filefgetsopen_and_read_include_excludefopenserious_errorinitial_exclude_includecommand_line_argcheck_if_file_included%     7 DR^o | 9 7GM^ lgrid.o/ 975708579 6685 165 100644 2644 ` ELF@4( UEUB(%X(EUB0%X0EUB8%X8ÐU4SE @]EU @(bu$}] ]m]mEU @0b u$}] ]m]mEU @8b(u$}] ]m]mE PU܋E PU؋E P0ŰEPtt N&EE؋]É]ԋEE܋]É]ЋEUЍ Ű HxUЍŰM ]U eeeEEE%u $}M Mm]m%u $}M Mm]m%u $}M Mm]mEEUPEj4EEUEUPEUPEXEX EX(EUUP EE XEUP0EPhEP UÍvU\SEEEEEEEUEPUEPUEP UE@]܋E@ ]ԋE@(]̋EP0UȋE@]EEEEU)щMEU)щMEU)щMEEEEE9E|EEEEMMEEU9U| W&EEEU MEU9E| EPEPEPEP] ӃEEEEE뚍t&EEEb]ÍvUEP0REP01.01GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.comment@h! 4 +16<=E  `;",6@< TY\akuIH grid.cgcc2_compiled.shift_atomminimum_xminimum_yminimum_zrecord_atom_in_gridrintgridifymaximum_xmaximum_ymaximum_zceilmalloc_and_zeromalloctraverse_file_atom_recordstraverse_gridfree_gridfree  2 b   d m s |      & 4er    S_hbond.o/ 975708595 6685 165 100644 6372 ` ELF<4( UPEU @(b(]EU @0b0]EU @8b8]EU @(b(]EU @0b0]؋EU @8b8]EMEMEM]EMEMEM]EMEMEM]EM$E]Et&ÉUEPE PEP ]E$ÉUE P|UE@$ER tEPE PER EEP|UE@$ER tEREPE P EUExOu  v1ÉUExNu YWvExOuGExGt.ExHt%ExEt ExDt!Ex Ntt& &1ÉUEE@E3333E33?E3333E33?EEExSuE ]Eu GEEEExHuE ]Eu E ]Eu 1ÐUEEEPE}UE EUE@EE;B7E$E EEP E}E EEPE}EEu1EEEPEEEPE EEPEEEP} t:EEEÈ@s lt&1bZEEEÈ@s+EEE  u 1 t&1U}(uj(h‹E,}(~.h@hhlhtPjE,M(ʍ UE,M(ʍ U TE,M(ʍ E\ E,M(ʍ E\E,M(ʍ E \E(U(ÉUEEE EUBUJ@I)ʉÉU VSE UEj(EPEEE;E |EU]ٍM\\EU]ٍMEU]ٍMD \ EU]ٍMD\EU]ٍMD\UЍED$aEE;E|4EUMu )ٍM\\EUMu )ٍM\EUMu )ٍMD \ EUMu )ٍMD\EUMu )ٍMD\UЍED$dEhj(EPEPUe[^UE UEEEE EEE}uhhEE;E|UЍE|$aPUЍED$UЍED$UЍED $UЍE RUЍEBPUЍEBPUЍERUЍETRUЍET RUЍETBPUЍETBPh`^_US] C]] ]EM 8<OEM 8<HEM 8<2umEM8<HuUEM8<1u=EM8<Hu%EM8<2u  t&1]ÍvUE UM0U"E U M8U"E U(M@U"ÐU h?jhjEEEh?jhjEEEh?jhjEEEEEUE EEUE EEUE ]EEudE$]EEUuEEEUuEEEUuEUEEEP‰01.01hohvect.c%s (mkfrathoh): nfreat=%d molecule is not Oxyz2hohN0%s [%d]: %s=( %f %f %f ) hypot3(N0[0],N0[1],N0[2])%s [%d]: %s = %f (R+0)(R+3)(R+6)rotaxis((rotang) * ( 180.0/3.1415926 ) )"ܥL@%s (prt_vect): %9s = ( %9.4f %9.4f %9.4f ) %s (prt_hoh): %9s : OX ( %9.4f %9.4f %9.4f ) : H1 ( %9.4f %9.4f %9.4f ) : H2 ( %9.4f %9.4f %9.4f ) rotation vector has zero length%s [%d]: %s "ܥL@|=95Fߑ?Hz>?hohdipole_rad_proj%s (radial_dipole_proj): ihoh=%d badsel=true %s (%s): firstcall=%d badsel=%d ihoh=%d @GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@j! \& +16< D=M!  $p '1r;BtKTT4D\xdjs(N,KxKn4^64 h ? B 4j '/p?,FYc,>khohvect.cgcc2_compiled.firstcall.46badsel.47mkfrathohprintfpdbtohohhohtopdbhoh2xyzxyz2hohishohnonfatalnprt_pdbrechohstereochemndistsqtranslatevectsubtractmkmatrotate_to_z_axisacoshypot3xmkrotmatrotateqrotatescaleprt_vectprt_hohsqrtorigin_rotmkrotmatcossinstderrfprintfcos_from_z_axisdotcoshohdipole_rad_projhohdipolerandlmnranfUZ_ i YI   X  $) LV[` lt  #-27 isx}       -2 di  "%&"'(mv~"b"ow"""4PYa&&&%#+8%GO\%*"Raqv{  5 H,*A.b.."[-hutils.o/ 975708614 6685 165 100644 2008 ` ELFT4( USEE;E|6EM U U Yt XtE‰]ÍvUE 8⍶Exht'EPh;tEPh;u t&mE8ts^Exht"EPh;t&EPh;uEPu2EPut&jhEP ÍvU]E E $EP EPhEP EÍvUMM1U:U:CuUB:AuU: txU:Cu UB:Ut_U:Zu UB:NtLU:HuUB:Gt9&U:Fu UB:EtU:Nu UB:At U:Kt&01.01"GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.rel.rodata.comment@R! 8x +16<D ( P=Y40  d U*X:K]j}<Mhutils.cgcc2_compiled.mark_as_rejectedreject_neiboursfirst_water_typesecond_water_typemetal_atom_pcall_with_neiboursreject_touching_atomsdistance_checksetup_neibouring_cubetraverse_file_atom_recordst      ' 0DPbn w io_RT.o/ 975708632 6685 165 100644 3388 ` ELF|4( U(E $E$E$E$h$E $E$E$E$h@$E $E $E $E $h$E$hn E؍PREPEPP E$E$E$E$h$ÍvU jjjjEE}EE RE RE REREREREREREREPEP, tEPE Pj ‰=} EE RE RE REREREREREREREPE P, tEPjEP ‰]EE RE RE REREREREREREREPEP,EE $E $E $E$E$E$E$E$E$EPEPPTUU jjEE}tXEEPEPEPEPEPtEPE Pj ‰t&} tMEEPEPEPEPE PtEPjEP ‰,EEPEPEPEPEPEE$E$E$EPEPP$Uv01.01 [ %7.4f %7.4f %7.4f ] [ %9.4f ] R = [ %7.4f %7.4f %7.4f ] T = [ %9.4f ] RMS = %7.4f Rotation of %7.4f about axis ( %7.4f %7.4f %7.4f ) %lg%lg%lg%lg%lg%lg%lg%lg%lga streama stringthe default[Got 3x3 from %12s] ( %7.4f %7.4f %7.4f ) ( %7.4f %7.4f %7.4f ) ( %7.4f %7.4f %7.4f ) %lg%lg%lg[Got 3x1 from %12s] ( %7.4f %7.4f %7.4f ) GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! 0 +16< D=-M4 P    m&-8@pMU\cjrTNio_RT.cgcc2_compiled.VerboseDumpRTprintfnr33tofortgetlmn_Get3x3MatrixdmatrixfscanfsscanfstderrfprintfGetXYZVectordvectorNS    ( 3 _d 1 S |>D_n{&HRkhist.o/ 975708642 6685 165 100644 5644 ` ELF 4( UEE;E |.EE$h EhÐUh E$hjhh$PE$h6jhh$PEE;E |Tt&EE$E@P$ME$EME$h;E뤉hPÐUEE;E |=EE$EME$hSEÍvUSEt&E;E |.UUMMuEȋ]ÍvU SEEEHPjEhj-hhPE;EEUEhj1hhPEPhj2hhPEHPjEEE;E|+UUMMEˋEHPjEP EEEEEPhE}u@UUE}uE$hPE;t&EUEE$EPhP}thjKhhPERh1jKhhPERjEEEU;|%UUMMEϋEHPjEP U]ÍvUVSE EEPEEEPEEEEEEE $h4johh$EEPE$h>jphh$EEPEvEEE;E |UEUMEEuEEU U EUEUMEEuEEU U EEhEEE$hEjuhh$EEPEEE$hMjvhh$EEPEEUE"}E Em]UmU}}]E]EEEEEE$hUj{hh$EEPEEE$h]j|hh$EEPEt&EEE;E|%EEEE EEEːEvEEE;E |UEUME!EEE0}E Em]UmU MEUME!EEE0}E Em]UmEU ] ]u &M1}E Em]]m ]  EE e[^ÐUjhEE@fEE@ @GE@@UÉUEEPE $hmhhh$PE@oEE;E |)EE$EP E͋UÉU SEe]EE]E$hhhh$EEPE$h}hhh$EEPE$hUhhh$EEPE$hhhh$EEPEt&EEE;E |%EEEEEEEːEvEEE;E |-UEUEEÈ@EEEEEE]È@EEEEEEeu}E Em]UmUEEEEEEeu}E Em]UmEUMMeu}E Em]]m ] EEE]01.01%12.6f # Histogram minrkhist.c%s [%d]: %s = %f maxrBin %f to %f %f %14.9f %14.9f ReadHugeAmountOfDataForHisto(): BEGINS%s [%d]: %s Getting More Space. %s [%d]: %smax%s [%d]: %s = %d %fFirst falue is v[0]=%f Last value is v[%d]=%f Total Number Read *nnumpointsarsize*valmax*valminrngwdth*binwdthNoNamenStatsOnFloatsminbinwidthGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@Z ! 4 + 1 6 <  DJ = M  L W&-X>EM0YWQfeH^Lvkhist.cgcc2_compiled.i.14DumpDataprintfSimplePrintHistostderrfprintfDumpHistoNormalizeHistoReadHugeAmountOfDataForHistovectorfree_vectorscanfhistoAllocateStatscallocStatsOnFloatsInitStatsIncrementStatsnhisto7< IN _d u|    !& v{   !DKPU [gnsx ~5: @sx ~  2e     JQV[ g  =Sar|      + < F K P  \ m w |        mallocd.o/ 975708648 6685 165 100644 1792 ` ELF4( UEE;|;vE;EuEE븋EPÉUEPEM UÐUÐUÍvUPPh PPh EE;|QE<t/EPEPh2 E말t&01.01malloc max %d start %d malloc max %x start %x offset %x , address %x GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@w! 8 +16<JD=WM\@   ,;fB =TYh?biwmallocd.cgcc2_compiled.start_interestingmax_allocationx_freerecord_allocationfreex_mallocmallocmallocd_startmallocd_junkmallocd_printprintf - F ] s        - D Z_qmanipulate.o/ 975708658 6685 165 100644 2884 ` ELF4( U}t.EPtUEtEPlREPUEEEU;P|#vEU REЋEREPEPREP REPÉUSEPЍUE PЍUEUPEh,EEUM RIXEUEPEPER EPEUPE R U]ÍvUE PEPEERE REPE PEPE PUUSEEU;P|$EPEU R] ӃEϋ]ÍvU SEEEU;P|CvEU UEU}~EPEPEP] Ӄ E뱐]ÍvUjEPE PEPÐUSE 8tE URӃu$t&E@PEPE RE R]ÍvU E EEEEEEPhEP ÐUjE PEP ÐUSExht,EPh:!EPh:|EPPEP] Ӄ ]ÉUEE PhEP ÉUSExht8EPh;tEPh;tEPPEP] Ӄ ]ÉUEE PhEP 01.01GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.comment@"! 4 +d1d6d<x=E  |)3<DI<[nyxpE0eQ/(8@P>P"lJz"manipulate.cgcc2_compiled.protein_argwater_argfree_atom_recordfreefree_file_recordsfree_file_residuesmaybe_freemerge_file_recordsmallocbcopymerge_files_and_purgetraverse_all_file_recordstraverse_part_file_atomstraverse_file_atom_recordstraverse_rest_of_atomstraverse_atom_pairstraverse_all_atom_pairsdo_only_proteintraverse_file_protein_atomsdo_only_waterfirst_water_typesecond_water_typetraverse_file_water_atoms' 3 t    Gb      %.Fx/186 975708669 6685 165 100644 1904 ` ELF4( U EEU;P|EU UE@(]E@0]E@8]EU  MU  MU  MX(EU  MU  MU  MX0EU MU MU MX8E UhPE$E$E$h,E$E$E$h,E $E $E $h,E $E $E $h,E$h? ÐUEEU;P|YvEU UEUM B(X(EUM B0X0EUM B8X8E01.01Rotation[3,3] \n Translation[3] \n RMS[1] %9.6f %9.6f %9.6f %9.6f GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! h +16< F Df=M  m#57BIQX@xmbg_RotTranCoord.cgcc2_compiled.RotateCoordinatesSimpleDumpRTstderrfprintfprintfTranslateCoordinates   X]     16 myawk.o/ 975708680 6685 165 100644 9788 ` ELFd4( UXW_1(󫍍____uhjh+h3P_UP_P_PuCvEPE P_P t!_H@Rh@_P 릋__UE;E u FDt&}t } u 1,*E PEPt1&ÉU}u1<:EPPREEPEP‰t&ÉUEEx t$hDj:h+h3P vE@ } Wt } u7t&EPEx thYPv} EU PhsE PUBExuKhujFh+h3PEPRhjGh+hP't&Ex tEPRhP Et&} ~EUэEڋE@E@DE@<Et&}~Ft&EUэHDEUэH@E믐E&}~*t&EHEEH`EEˋUt&ÉU}uhPjEEEx thPt&E@ Ext0EPREx thPExuDExt EP:-t.EPEx thPExuzExtqhsEPRUBExu)EPRh P 1@)Ex tEPRh@P Et&} ~EUэEڋE@E@DE@<E@@E}~AEUэHDEUэH@E봐E&}~*t&EHEEH`EEˋEx th[PÉU SE}u1&8usv8\u@8nu 88\u@8tu  낉PEPhh+hPP‰ÉU@PhEP PhE P PP…ЉvÉUE 8u1=;E E;BuE  #!E REP‰t&ÉUSEPE RuE PE xujj j‹E ҉PUE@]EPEPPRREU JAʉPE PREP‰]ÉUVSuM } ~EPÉ؃u ؈PFEPtu;uuE1e[^ÐUSE U}u)hhh+h3P1}uhj jEE@]EPEPPRRE@E U1t&EPEP‰]ÐUEE&}uEPUEPUt&UÍvU} u 1GEt&EPE Ru !E PREP‰ÉU} u LJEPE RuE P(&E PREP‰&ÉUEE}u 7&EREPRhPEPUƐt&ÉUE}u q&EEE<u3vEEREPhE PE뽐t&hhUEEH@uzEEUэH@<uDt&EUэH@REPEPDRhE PE맍&hE PÐU}u1|Et&EE<u.EEREE E뽋E EEE DU ÉU VSE8u EPuH@uEx@u!EPRh EHP &EP@REPRh EHPÉ]E@<}u7Ex t"hhXh+h3P1E@uH`uEuH0]ERBEREPE@filename%s [%d]: %s = %s InitTokens: opened file %s InitLexer: BEGINS InitLexer: rewound file InitLexer: opened stdin InitLexer: Cannot open file %s InitLexer: opened file %s InitLexer: ENDS %s [%d] (ConvertUnixControlChar): %s --> %s %ss == NULL%4d %s [ %d ]: %s [ %5d ][ %3d ]: %s eof == NULL(d->NF >= 1000)(d->NF >= MAXTOK)Beginning TokenizeStdinOnBetwP: OnMatch=%d OffMatch=%d *flag=%d (*flag & 1)=%d GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! d  +41<6<<`z D=M  v "-5? JRfnu}v !ZDN.< @b N.=kMV]$ k =}, V ^ N4  T x>)Z6^Kt5`Fmyawk.cgcc2_compiled.OnFlag.42OffFlag.43init.44OnFlag.59OffFlag.60init.61NarrowFileBetwStrgstmpfilestderrfprintfInitLexerTokenizeLineOnBetwStrgsStrEqstrcmpSaveStringstrlenmallocstrcpyInitTokensstdinfopencallocrewindConvertUnixControlCharStreqWithSpacessscanfStringOfIndexIndexOfString2fgets_WithDelim_IO_getcstrchrIndexOfStringLastIndexOfStringInSymbolTablePSymbolTableIndexNoAddPrintIndexedStringsPrintTokensprintfPrintTokens2ToksToDoublesatoffgetsstrtokTokenizeFileTrueBetweenPOnBetwPInclusiveOnBetwPOnBetwStrgs2InclusiveOnBetwStrgsInclusiveOnAfterStrgInclusiveTrueBetweenP'=DINTo~[i~ 4=V]bgm|+ <AGw\$* )QZ#ir#$3_mz%'(: D I N T m     %K m +  ,       /  /$ - A J  2 + 3S &y        1;@EK^410 (}0Qm97;T_88)Ncneibour-cube.o/ 975708691 6685 165 100644 6140 ` ELF4( U EEU E@]EEEEXEEEMEX EEu EEEu EÉUEEEPtEEE@0]EEE@8]EEE@(]EEu EEEu EEEu EEEu EEEu EEEu EÐU} t@jhEP ÉU}t(~.A~.E PhUVSEPtE@(%E 0$}] ]m]mE@0%E 0$}] ]m]mE@8%E 0$}] ]m]mEUэMΉ])M] ʋM΍])MuΉʹ Pxt+PEPEPEPEPhEUUM)эЋUU] )щ]UUкM e[^UhhEP ÐU@S%HH]%HH]%HH]E ]E ]E ]E}~ t&E}~Et&}~hEĉEUEUȉӉ)эEЉEỦӍ )щӉEЉEEE딍t&EpEPEPPEEuZEPP]E}t-E$jE$h@EEPEPPEEuZEPP]ءE}t-E؃$jE$hEEPEPPEEuZEPP]СE}t-EЃ$jE$hEEPEEEP]ÐUjEPE $EP USEPtUEt6 tTrtet&EW&EPtЃE%t&}U&}DžXE@(%5$ٽPP H٭H۝T٭PE@0%5$ٽPP H٭H۝D٭PE@8%5$ٽPP H٭H۝@٭PTH Edge too small for x , deltax = %lf,cube_side = %d, egdex = %lf *> Edge too small for y , deltay = %lf,cube_side = %d, egdey = %lf *> Edge too small for z , deltaz = %lf,cube_side = %d, egdez = %lf ?>@GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@? ! p + 1 6 < X D =5M<p  r5?It[eoy`^D  .5Q\u}(r( neibour-cube.cgcc2_compiled.setup_atom_definitionmaximum_rminimum_rcheck_min_max_xyzmaximum_xminimum_xmaximum_yminimum_ymaximum_zminimum_zsetup_minmax_xyzrtraverse_file_atom_recordssetup_file_recordstraverse_atom_definitionsput_atom_in_cubefloorn_cubedebuggingstderrprint_an_atomprintfadd_file_to_neibouring_cubecube_edgesin_setup_neibouring_cubefprintfsetup_neibouring_cubedistance_checkcall_with_neiboursatoms_distancealways_call_with_neibours@ P Y l   $-=FYksy       %5Xk  *>C  )5A '/7?diu!!'/7\am!  LR]  % # #6 $nrvect.o/ 975708702 6685 165 100644 10452 ` ELFT4( UjjEP ÍvUSE}~QE}~5UUM$h EE뭍]ÍvUjjEE8ERhj}ȋ}}u4u} }܋uu؋}؍<}ԋu}܋47uЋű}7uԋ} 7 E!EEUe[^_UpSjjjjEEEEEUE EEUE EEUE $]E ]hEEPhEEPhEEPh@EEPEEu]hhh hEEPEEEEEEEEUuEEEUuEEEUuEEEE$]EEUE EEUE EuEE]EEUE EEUE $Euh]EEUE EEUE $Et&]EEUE EEUE $EuEE?I]EEUE EEUE $]]EEuu]EEEEuE]EɃ$]EɃ$]EɃ$]EɃ$]EɃ$]EɃ$]EM]e]UEEMMMEEUEEMMMEMMEUEEMMMEMEUEEMMMEMMEUEEMMEEUEEMMMEMMEU EEMMMEMEU EEMMMEMMEU EEMMMEEU]U E$]jjEEUEUE@E$EP ‰ÉUE}~.EE$h EÉUjE$E$Ee $h jE$E$EE $h jE$Ee $E$h jE$EE $E$h jEe $E$E$h jEE $E$E$h ÍvUWVSEPE PËEPE PƋEPE PNjEPE PEEPE PEEPE PCNGUJUBH$]jE$E$E$h jE $E $E $h E$E P e[^_ÐUjE$E$E$h jE $E $E $h ÐUhE$h?jE$E$E$EPj E PhPhDU0EPEU  EU  EU  $ EEPEU EU EU $ EEPE PEEPEPEEU EU EU ]؋EU EU EU $]ЋEU EU EU $EE]E$@@]EÉUEPE PEEPEU EU EU $ EEPEPEEU EU EU $]E&ÉUEU "$EU "$EU "$‰ÍvUjjEEEEEEEUt&ÉU0hHh|h hPE PEPEEU EU EU $]EPu$ EEPE PEE PEPEEU EU EU ]Eu]؋EPE؃$ EԋEPE PEE$h_hh hdPE$E$E$hvhh hP,E$E$E$hhh hP,hhh hPUЉÍvUEUM !EuUUM !Eu.UM !EuEEÉUE PEPEjEPEE&E;E|^EE]EPE$ EE PEPU U EPE똋EUEPU01.01%f *argcnrvect.c%s [%d]: %s = %d nrvect.c [%3d]: %s = ( %f %f %f ) @WARNING! The routine nrmkrotmat() has been entered. WARNING! This routine may be defective and has been WARNING! superceded as of 9 August 1994 by WARNING! NR_mkrotmat() in NRVects.c. rotation vector has zero length%s [%d]: %s "ܥL@|=95Fߑ?Hz>%10.5f%10.5f%10.5f%5d $@ CA ATOM %5d %4s %-4s%1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s "ܥL@ProjectPtToSegment BEGProj%s [%d]: %s = %f dirSeg12%s [%d]: %s=( %f %f %f ) dir_checkProjectPtToSegment ENDư>GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! " +16< D=M   ! !,9mELW_dx{`N4^(jdrPx F#Lm9CStUewvxlF%<nrvect.cgcc2_compiled.iser.38FreeVectorfree_dvectordump_matrixprintfargv2dvectdvectoratofrotate_v_around_z_to_xatan2nrmkrotmatdirection_from_2vectsnrscalenrsumnormalizesqrtnrcopymidpointnrrotmatmult33dmatrixstderrfprintfacossincosnr_rotate_to_z_axisdump_vectorGraphicsVector3dCrossGraphicsVectorKludgeArrowsecond_from_firstgraphics_vectorsatom_vectorangle_on_planedist_on_planevectProjectPtToSegmentnreqPtsOnLinecalloc  di  bg &;L3?($.38D * 2     K      ! ) 6 !E M Z !i q ~ !   "   "   "   7<    38 ot  '''''*'V  %05 in | )t''a ''Z,%*/5E''*?U_dio#)[c'09Nl  pdbio.o/ 975708716 6685 165 100644 8080 ` ELF4( UE $PE PE PEPEPEPE DPE tPE PE 8PE PEP0U E ÐU EE}uhhh EPh EP tjhEP u t&jh"EP t"jh'EP vE}'~-h'EPh. hJhh EU RhXh UЋU UЉUBUЉUBUЉUBUЉUBUЋU  UЉUBUЉUBUЉUBUЉUBEUЊEURh\h EU Rh`h EU$Rh`h' EU(Rh`h/ EU,Rheh7 EU0Rheh= UЋU4 I UЉU4BJUЉU4BKUЉU4BLUЉU4BUt&ÉUE4EE8PhjUЉU0REE,$EE($EE$$EE $EE$EEREURUЉURUЉU REERhDUUЍ$EPEUэ݄$EUэ݄$EE$EE$EE $EUэDREtERUЍEPUЍ8EPEUэRhDÍvUE&EE U;~UЍ$E PE Uэ݄$E Uэ݄$EE$EE$EE$E UэDRE tERUЍE PUЍ8E PE UэRhEPHÍvUEhEPhEPEE U;~ &E M8U}Cu EI}Ou E:}Nu E+}Su E}Pu E }MuEE UэDRh'EP UЍ8E PEPUЍE PE Uэ݄$EPE UэDREPE Uэ݄$EE$EE$EE$h@EPHn&ÉUEE;E8~UЉU4REE0$EE,$EE($EE$$EE $EEREURUЉURUЉUREE RhEPHE ÐUEEE U;~)EE< UЍ$E PE Uэ݄$E Uэ݄$EE$EE$EE$E UэDRE tERUЍE PUЍ8E PE UэRhEPHÉUEEE;E8~EE<<UЉU4REE0$EE,$EE($EE$$EE $EEREURUЉURUЉUREE RhEPHÉU EwE E}EEE?EEEPE$E$E$E$E$E PEPEPEPPhEPHÍvUEwE E}EE?EEEPE$E$E$E$E$E PEPEPEPPhEPHÉU EhUEEU;~}OugEM8<OuOEM8<Hu7EM8<2uEE Ev}HujEM8<HuREM8<1tEM8<2t EE E&EE Et&EREPEPhhUÉU`` WVS}~"hE R1ExtE RE R;PttPPtPPDž;|Džt4D4;|0t4D4; Dž }Ah}Ѝ8tPhЍ8tPtchЍ8tPt4hЍ8tPuevhЍtPt1hЍtPuP;PttPPtPP[^_ÐU\ ;;}~E R;VPPP;PP;Dž;t&;;;~w;݅;ݝ;;݅;ݝ;;V݅;ݝ;;yۅ;݅;ݝ;ۅ;݅;ݝ;ۅ;݅;ݝ;;P݅;$݅;$݅;$hP$01.01stream == NULLrd_pdbpdbio.cENDATOMHETATMDEBUG: natom=%4d MXPDB=%4d natom > MXPDB%5d%4d%8lf%6lfbuf: %s ATOM %5d %4s %-4s%1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s 1.000 1.000 1.000 90.000 90.000 90.000 (4F10.5, 3I5, F9.2, 1X, 2A4, 3X, A4) %d%10.5f%10.5f%10.5f%10.5f%5d%5d%5d%9.2f %-4s%4s %-4s CA UNKPDB_SELECT%s (select): es=%c gives nsel=%d from P->natom=%d -bb O C N WAT TIP3%10.5f%10.5f%10.5f%5d GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@!  +1 6< D=DML`    &.s6tn=FLT[bk w9( JD d   ^,pdbio.cgcc2_compiled.buf.4iser.21iser.24nrd_pdbrd_pdbnonfatalfgetsstrncmpprintfsscanfpdbdebugnprt_pdbrecnwrt_pdbfprintfnwrt_diasprintfwrt_pdbnwrt_pdbselwrt_pdbselSimpleWrtAtomSimpleWrtAtom2Nselectgetenvpdb_selectstrcmpatoistdinstdoutpdb2vectcentroidZ } 6;CHMRlqv :Ty"',FKPf6?GP  * 3 E N m x       % 0 R       ?M!{""# |!!! .!Ab!p!$)"\#b ot$zread_residue.o/ 975708728 6685 165 100644 7804 ` ELF4( USEPU] ]EE UE @UE UE U}t(}uE E E}u E EEEvE;E|vUЍ]Ӊ]](]EU:uPE@U:uEEU:u8Ex,t#EP,Ѝ U Ut&Eh1t&]ÍvUUku3lu't&hxxPhTj hxxPE xxPxxDžxxPE xxPxxu"E xxPhj jhxxP(xxP }=xxBRE xxPxx||u"hxxPhj x|BxXx|BxXx|BxXx|+M iNĉxH,xxPxx|x|xP0xx@,}~1݅E@tx݅xX5|t,x|э xX}~1݅E@tx݅xX5|t,x|э xX}~1݅E@tx݅x5|t+x|э x&ÉUEPh,P ucEPdPh,PE}0d!#d;Dž`eu"ƅe dfƅd Ufu'efdeƅd %gtdPhj ƅg},\t&\Uf% fu \҉\Uf% ft \Ґ\Uf% fu \Ґ\8=uU\@PXXu,Ph j X`E&E}| }dPh@j `҉PEPdP X`|X`XPEPzU SEPUM MEE;E|"Ex(tEPEP] ӃE4Eԋ]ÍvUSEt&E;|+vEPE PER]Ӄ Eȋ]ÍvUE PEPh ÉUhbEPEDž(Dž00~EPh4P 4EfftF5Efft$6Efft tt&4P,EPh4P P$PPhd4PVP,P (t ݅X  ݅X[t&hn,Pu(u Dž( Dž(0YÍvUhbEPEDž(Dž00~REPh4P 4Efftt&뾍4P,&EPh4P P$PPhd4PSP,P (t ݅X & ݅X\hn,Pu(u Dž( Dž(0t&ÉUEE;|SEUEPREREPEPERhE01.01Failed to find atom deinitionTrying to modify non-existing residue%s%s%lf%lf%lfWrong Atom name (too long)Too many atoms in residue definitionFailed to find real atom for dummy atom%s%dWrong residue name (too long)Failed to find alias residueWrong atom number in residue typer%s %d %lfCYS@ %8x %3d : %3s = %4d (%4d atoms) GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@T! $X +16< D=M  |-%Dcp }(ZXX.@FKS*fls  Q Q P %l ;AHLapuread_residue.cgcc2_compiled.residue_typesfind_atom_definition_1handle_missing_atom_definitiondumm_residuedefault_atomdefault_C_atomdefault_O_atomdefault_N_atomassign_dummy_atom_definitionfind_atom_definitionserious_errorfind_residue_typeresidue_type_numberalloc_residuemalloc_and_zeromax_resuidue_typebcopyfreestrncpyread_residue_atomsfgetssscanffind_type_definitionatom_vdwatom_covalentatom_chargeread_residue_definitions__ctype_btraverse_residue_definitiontraverse_all_residue_definitionstraverse_atom_definitionsread_standard_volumesfopenstrcmpread_standard_volumes_ntShowAllResidueTypesprintfHTbr      (AH  0 a ks y   $*/8^ T[  Jt  ! "1 O [   B $s $ $   @ G h   3  \ %a &v  )  $$"$Hq*V_)$%1P*  8 AF-readpdb.o/ 975708740 6685 165 100644 11748 ` ELF(4( U`EEEEEEEEUMB I@UMB8I(EEEUMI@UMB0IEX EEUMB UMBIEX@EEUMBI8UMB@IEXEEUMBI(UMB IEX0EEUMB(I0UMB@IEXEEUMBIUMI(EX8EEUMB8IUMB I0EXEEUMB0IUMI8EX(EEUE EEUE@JEEUE@0J0]EEEEUuEEEUBuEXEEUBuEX0EEUBuEXEEUB uEX EEUB(uEX8EEUB0uEXEEUB8uEX(EEUB@uEX@ÉUE} vMjEPEP uE &E1&ÉUjdEPE P ÉUE 8CupE 8YueE 8SuZ`  R` @R` REP` E8CupE8YueE8SuZ`  R` @R` REP` ÐUhcEPt ÉUPEPÉUE PÐUÐU jEPݘPjEPݘXjEPݘ`jE"PݘhjE)PݘpjE0Pݘx $MM7MEB9Er:vEUEEEf fu EUE빋EÐU MU<2t?<2 <1t <3tRzM0MMMEEMHMW&M8MM MMMMPM*M@MM(MMMMXMt&EPEPEPEPhgE PÉUSE}vAEM; uEM QӃE뺍v]ÍvUEHEM9M| |t&EEU MEEMMEEMQt 2E@EMME;| t&MMUEM MEEMMEPtMMEPMMEPEMMUE@EM;Ju9EEUMIME:BuMMUE@EM:Ju<EMQEEMQEMQEEMQhwEMQEEUBt MAtMMUJtEHtEEMQREEMQREEMQREEMQEEE}tMMUJ(EH(EEMQREEMQREEMQREEMQEEE}tMMUJ(EH(Et&EnÉUM US] ,] @(EPh8P $$u18Pw밍8P008P0P=u8P,tFh 0 P8P =u1 DE t'Effuv(u+H€D!Ѕu {h Dž 0j8P P @ Ph8PR j8PR P D 3j8P RP 8Sua@8GuO8 uA8u3 x Cu' x Yu x Su P08Cu@8 ti&8Cu@8Au8 t;8Ou@8 t"8Nu@8 t &"&j8P RP HP x t xAt @M 8tP P RP Ph8PR HP @P 8P 0P (Ph8PR P Bh P PhR Bl PP XPh8PCR Pt UTSEEEEEEPEh,P}tE PEPuUU苍 EttR`=>EE;E|&EERE҉1)&E&E;E|QEUPEPPEP EPEEEEEh,h,PP PUUPPDž;` | P@PPPtOhPtZtXtZ(X(+=` u=u&=tt&=tP@PU=uhhj EPh P hHEPE` }uh`P1ljt&E PEPEEP}t EPUBEP EPhP UÐUEPEPE=t(} t E P}t EP1S} t:EU JHEU J H E @ E @E P EP UÍvU` hHEP‰ÉUÍvU} uhP E 8EPE PE%tE PttE%tE PttE%t1E PE PRE PhEPE @H$E @@$E @8$E @0$E @($E PRE PRE PRE PE PRE PE PRE PE xu `PEPPE%tGU B`U z`uEU BdU zduEEPEPhEPE%ftE @X$hEPE% t@E PpRE @P$E%ft &PEPEPj ÉUEE U;P|)EPE U REP EʋU ÉUhEPE}u 16EPE PEP EPE PEP U ÉU=uhhj hP` EPPE}tE@EP U\UNG@92+$01.01ư>SCALE3SCALE2SCALE1CRYST1HEADERENDMDLMODEL EXPDTAREMARKSSBONDDUMMY HETATMATOM NMR%lf %lf %lf %lf adding sulpur bridge @%5d%4d%8lf%8lf%8lf%6lf%6lf%lf %lfSGdo_initialization was not called before reading a fileopen_and_read_pdb(): Trying to read %s ropen_and_read_pdb(): Unable to open file, returning NULL. open_and_read_pdb(): Finished reading %s write_pdb_record(): atom == NULL %s%3.3d:%4.4s %6.6s%5d %4.4s%c%3.3s %c%4d%c %8.3lf%8.3lf%8.3lf%6.2lf%6.2lf%6.6s%5d %3.3s%c%3.3s %c%4d%c %8.3lf%8.3lf%8.3lf%6.2lf%6.2lf %3s%-10s %6.2lf %6.2lf %2d %6.2lf %2dwTrying to read stdin stdinGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.rel.data.bss.note.rodata.comment@! '( +1 D- ;d @F N=W0  8# ` '  3@ ? IVe{ hr x &D&,8CNlZ_p}|8]  -5G $V Hbhov~PH -;AH8Xj: 2TN^readpdb.cgcc2_compiled.max_ssbondedss_bonded_xss_bonded_css_bondedmodel_numberread_nmr_filescheck_sulphur_bridgesdeal_with_disorderinvert_the_scalerecord_typesfind_record_typestrncmpcopy_all_recordstrncpyrecord_ssbondread_residue_specaction_flagcheck_for_nmrstrstrrecord_headerfile_headermaybe_freenew_stringstart_modelatoirecord_end_modelrecord_cryststrtodcurrent_file__ctype_brecord_scalesscanfother_type_functionsmaybe_call_specific_functionadd_suphur_bridgesmax_sg_atomsg_atomsatoms_distancestderrprint_an_atomfprintfresidue_by_numberrecord_sg_atomread_recordfgetsstrlenmalloctolowerfind_residue_typefind_atom_definitionread_pdb_filebzerofree_atom_recordbcopyfreemake_residuesfind_atom_in_residueLinkUp_Residues_Atomsopen_and_read_pdbdumm_residueserious_errorfopenfcloserepeat_read_pdbfree_file_recordsopen_for_repeat_readwrite_pdb_headerwrite_pdb_recordfputsfputcwrite_pdb_fileopen_and_write_pdbopen_pdb_stdinstdinEV\ms  )8HNZdw! $%$%$%$%$ %4$<%H%&%q}()),$-`,-.9/O0W/m0uz/12I 2 , - , 5 60 ^ *g v   7   &v 7   ( 1  3d  8  (GV(h9:(+7D<S%Y,c m4=B7a>m?7>@#;Sc2|A,+-BPDX]dEpu/{1F/1;G!/'1G;UgIyII,F-2/81[M1ahr111#1;1INLFKO D E(-/31<FSRY;qz$,4<DLT\dlt'# "reference.o/ 975708753 6685 165 100644 2312 ` ELF4( U|hE}h EPE}uEPh j &EPEPh EPE}u &}uEPh@j }(u}Su E4EPE}uEPhlj EUEED}thhj ףp=O@(\…V@= ףpea@)\d@\(d@(\^@Qd@Q&h@(\h@33333m@= ףpW@ ףp=]@Gz_@b@I\@(\c@Qxa@(\O]@(\/h@Hz?e@Z@fffffL@(\Q@)\X@ ףp=J\@ ףp=J\@HzGX@Gzf`@(\eb@(\ed@QFg@QU@ףp= GY@ףp= \@Gz`@fffffY@Gz$a@p= `@(\…\@Gzc@= ףp%`@fffffY@;On?sh|??L7A`? ףp= ?9v?&1?~jt?+?Mb?9v?Dl?V-?I +?{Gz?;On?I +?X9v?A`"?v/?v/?Mb?01.01referencerFailed to open file%s %lfWrong refrence volume specified for residueWrong residue nameReference file must be given as argumentGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@.!  +( 16< Di=M    -FX.treference.cgcc2_compiled.reference_volumeresidue_molecular_weightresidue_frequencymaybe_read_reference_volumecommand_line_argfopenserious_errorfscanffind_residue_type  #,CJir %residue.o/ 975708772 6685 165 100644 4264 ` ELF 4( UMMMME}~vEE<tmEEUEEUEE;E|*EEUEPE̋EPEjÉUSj@EEUJhHEUPE]CX EUJH4EU P$E@(EUJH5EUJH0E@E@E@E@ E@ExhtEPh:EPh:|E PEPU&]ÍvU8S]]]]EEUEPUEEE;E|EEUE8EPhU܋EPU؋EPUԋEPUЋEԍEŨ}u:h NEȋUԍUMȉ M̋EԍEEEȃ}t(EP5;UuEP4;UuEȋP0;UuqvEPEPEP Eȃ}t EUP EԍEŰMȉ EȋUԍ U H,EԍEEȉEEPt EȋUPzEPt EȋUP]EPtEȋUP>vEPtEȋUPvEPt EȋUP E}t EUP E}~ t&EE<tzEEЍUȋEEŰEPU U EPEEREP EPE[EǀE1]ÉU SEP$EEPUEU;P |EXUe[^_UWVSE&}'~5t&EEEEEED@EÍvEEEE;E~ et&EEEEEEUEEE;E}EEEE}tEEE;Eu8UEUMM EEEEEEEEE EEE@t8EEEEEEE@t+EEEEEED@@7UEU] ]u<u  >EEUe[^_01.01stream == NULLrd_RADrichards_RAD.c BEGIN TOTALDEBUG: n=%4d MXPDB=%4d natom > MXPDB%5d%5d%3d%3d%6c%6c%5d%8lf%8lf%8lf%5lf%5lf%8lf%5d%8lfwrtsel_RAD%5d%5d%3d%3d%6s%6s%5d%8.3f%8.3f%8.3f%5.2f%5.2f%8.3f%5d %2d %5d %2d %2d %4c%4c %3d%8lf%8lf%8lf%5lf%5lf%6lf%6lf %4lf %2d %5d %2d %2d %4s%4s %3d%8.3f%8.3f%8.3f%5.2f%5.2f%6.1f%6.1f %4.2f @@GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@O !  + 1 !@ 6 <  DP = M  $ %  +I6L}MV\dkqxTe\ h richards_RAD.cgcc2_compiled.buf.4buf.9select_allrd_richards_RAD_volumenonfatalfgetsstrncmpprintfbzerosscanfwrtsel_richards_RAD_volumefprintfrd_richards_RAD_areawrtsel_richards_RAD_areasum_per_residuesum_per_residue_prop1000Uglqv #(-2 St 4=]oty~  (-27 Xy ?H    selection.o/ 975708796 6685 165 100644 4660 ` ELF 4( UEUJt M HtUEUJt#M HtUE PhEP ÉUE PhEP UE Ph8P uDž,Dž( 8,<u7t&8,P8,,뵋,H8< u,H8Dž,8,Ef fu8,<_t ,븍8,Eff8,R08,Effu ,ːt&8,<t8,7,ƅ7 7_uƅ7 t&8,7,8,R08,Effu v,ȍ8,<t@8,< t.8,<_t8,(,(P7P0PEP$$u8Phj 8,Ef fu8,<_t ,빐t&8,<q8,<uXv, t&8,Ef fu&8,<t8,<_u ,륐t&8,<t8,,8 R$Pu8Ph@j }tQt#U Qt UPt8,Ef fu8,<_t ,빍v&EP}tP$P U}u6E EE8uE8|uE EE PE/hmE PE}uE Phoj jEPjjEPEPEPÍvUE Uf%ЉU}tE PE6&hmE PE}uE Phj jEPvEPhEP DvEPEPE}uEPhj EUJtHt럋EPÐU=tPEP=tjPEP =tjPEP ÉUjEPjhEP ÉUjhEP UE8tEUJtHtÐUjhEP 01.01Failed to find residue for selectionFailed to find atom in residue for selectionrFailed to open residue fileFailed to open selection file%dFailed to find atom for selectionGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! L + 16<@ D# =` Mh    S 2I([vD`T(;AHel{ZL& t6Dselection.cgcc2_compiled.set_atom_selection_onset_atom_selection_offturn_selection_ontraverse_file_atom_recordsturn_selection_offsetup_flags_from_filefgetstoupper__ctype_batoiresidue_by_numberserious_errorfind_atom_in_residuetraverse_residue_atomsselect_residues_for_calculationstream_from_stringfopenfcloseselect_atoms_for_calculationfscanfatom_by_numberwarningselection_argumentresidue_selection_argumentresidue_selection_filesetup_selectionselect_protein_atomstraverse_file_protein_atomsignore_water_atomstraverse_file_water_atomsignore_hetatmignore_hetatms0 9 N W 8k%ELl2 9 F  +AJahv   $-!7!AV ` i$z &' shell.o/ 975708813 6685 165 100644 6368 ` ELF$4( U(EUEPUEPUEEEEEUUEP0UEHUUEHUU܋MIMEt&E;E|8EEEUЍEE뾐EE;E|vEEEU9E|2EEEUЍEE뿐EEEU9E|6EEEUЍEEE뻋EEPÉU@EUEPUEPUEP UE@]E@ ]E@(]؋EP0UԋE@]̋E EUUЉUUԃ<t2E HUUȋE U9U|EHUMщMĐt&EUE9E| t&EċUЍHMEċUЍP9U|vEEԃ<t[EEԁ<tEEEԁ<t/E EUUЉUUM&ExEE=EEE EUUЉUUU@EUEPUEPUEP UE@]E@ ]E@(]؋EP0UԋE@]̋E EUUЉUUԁ<t t&E HUUȉE U9U|EHUMщMč&EUE9E|xEċUЍHMEċUЍP9U| L&EEԁ<u*E EUUЉUU"E뢋EEpEE5t&ÉUVSEUEPUEPUEP UE@]E@ ]E@(]؋EP0UԋE@]Dž\E EUUЉUUԁ<tE HUXE U9X|EHUX։T&EUX9T|TUЍpPTUЍP9P|B\`PMԋ\P뭍&ETbEXDž\t&\ ~ut&\`8~J+\`:~(E EUUЉUU \끐H[^ÉUE``PttE ``UE ``PUE ``PUE ``P UE ``@]E ``@ ]E ``@(]؋E ``P0UԋE ``@]̋E``@(eũ$}ċEĴ Em]mċE``@0eũ$}ċEĴ Em]mċE``@8eũ$}ċEĴ Em]mE]E`EME苅`@(]E`EME`@0]E`EME؋`@8]EHEEȃ``9E| t&EM]EݝxEHE&E``9E| dt&݅x܍xݝpEݝhEHEE``9E|EE`UU`Љ``U`Uԋ```ddtdt}UBl`E܅p݅h܍h`@ EuHEE`UU`Љ``U`Uԋ`݅heݝhE݅xeݝxEt&Ee]E/ÐUjjjEPjEPE Ƀ$E E $EPEEPjhEP jhEP EPhEP jhEP UÐU8EUEPUEPUEP UE@]E@ ]E@(]؋EP0UԋE@]̋E EUUЉUUԋEȁ}t}t}t t&U@EUEPUEPUEP UE@]E@ ]E@(]؋EP0UԋE@]̋E EUUЉUUԋEȁ}u E0}u E}uE &^hEEhEPEPhEPE@ h#E PEUĉPEE ((MEX(EE((MEX0EE((MEX8E@@@D?E@ E@H@LE@tE PUBhEPEPhRUBl M ÍvUE $EP EjhEP h,PP¡jhEP EP01.01@?@DUMMY O HOH?GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! 8 +T1T6T<h0D=M`  < .rE Vtg x(j  &   %3N f8 zXshell.cgcc2_compiled.potential_water_countshell_with_not_contactnot_contact_cellfill_not_contactmaybe_water_cellcheck_cavities_againmaybe_cavity_cellmodified_cavity_cellcheck_for_cavitiescheck_in_vdwfloorvoid_cellgenerate_shell_gridsetup_file_recordssetup_minmax_xyzrgridifytraverse_gridtraverse_file_atom_recordsincrement_water_countergenerate_dumm_watermallocstrcpyfind_residue_typefind_atom_definitionwater_shellgenerate_shellmalloc_and_zerofree_gridshell_mulecule_radius    @ Y    " @ h 2RZqy       $ 5  ?  H R [ g p z     $ 2       ) 1 = L X p x     $ 4!:Olz#!!!$!stats.o/ 975708824 6685 165 100644 8132 ` ELF4( UhEPE@EE@ @GE@@UU@E@ $hPE@$hPE@ D@uDž &E@u Dž E@T$E@L$E@4$E@<$E@$PPE@,$E@$ٽ ٭۝٭PEPRh E PHUEPRhE P EPRhE P E@$$hhE PE@l$hhE PE@t$hhE PEPRhE P E@ $hhE PE@$hhE PEPRhE P E@$hhE PE@,$hhE PEPRhE P E@D$hhE PE@<$hhE PE@T$hhE PEPRhE P E@d$hhE PE݀$hhE PEPRhE P E݀$hhE PE݀$hhE PE݀$hhE PhE PU SEEE8uEEEPUEEUB$EX$EEUBE EXEEUE M B4EX4EEE EXEuEEE EXEEE EX EuEEE EX EEE@$D@uhjNh#h+vEEUMBq$EX,EEUE@4r$EEUE@,J,]EEuEEEÈ@shjRh#h7t&]E$[<]EEE@4$EEEp$[L]EEUE@4r$$[\EEE@,@@EtEEUMBnum != 0var >= 0& .>%s [%d] (IncStatsWithWts): Error %3d, Value= %f & .>& .>GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! tP +81<6<<` D=EMLp   X&,X,6>FQL3`nsHstats.cgcc2_compiled.i.2InitStatsbzeroDumpStatssprintffprintfNDumpStatsIncrementStats__assert_failsqrtIncStatsWithWtsstderrReComputeDerivedStatsReComputeDerivedStats2  Kz  08Kf{ %.BGPdir!*>CL[dx} $)2:Cl #*/4/MU w |    , 1 6 B     F       ! - \       M R W c    DINZ7<AM MRWcFNsurface.o/ 975708838 6685 165 100644 4372 ` ELF| 4( USE Eu E ] EEu E%]E ]EuuEEEPE$h! h-DTEEEPEEEEEEPh! @h-DTE $EEEP‰MHEEEE;E|EEEEEE]EEEEЉEU]E ]EE ]È@E]EUEUMMYEEEEMAEU UJEEEEPE$E$EEEP‰ UE]E]EuE]UEUMMYEEEEMAEU UJEEEEPE$E $EEEP‰NEt&UEUE EEUEUEEEU]ÍvU EEEEE;E |8EMAU U$ E]EEÍvU@E@(]E@0]E@8]EE;E|EE UE@(e]܋E@0e]E܃$Eԃ$]̋UUEEMEM]Eă$EEUUEEK&ÉUE<<@(]E<<@0]E<<@8]E<݅$ݝDž<<;E|<<E <<<OUZWqv % gsurface.cgcc2_compiled.two_piinsert_arcsum_of_arcszstepsetup_plane_dataatan2sqrtcalculate_atom_surfaceacoscall_calculate_atom_surfacecall_with_neibourscalculate_surfacesetup_file_recordssetup_minmax_xyzrmaximum_rsetup_neibouring_cubetraverse_file_atom_records & 2:O     G< BJ  ? B       ( 1 7 L T Y b symmetry.o/ 975708847 6685 165 100644 6236 ` ELF 4( Uh EPhP t&ÉU}t EPÐUE&iEU U@tEPE Ph6 }-wdE1 t&Et&Et&U Bt&U Bt&}}EPhJj EσI`E}tEit&E}tvE9t&E}tvE t&EU PE@tEU PEPhf vEU Uf%fuE ӍvEU Uf% fu &E ̋EU Ѐ8/E &EU Uf% fuE ӍvEEU PE}uEPhJj E]EE]@tE$EPEPh{EU Uf%fu E ͋E}ueEt&E}tE E@tE$h EPhJj E vÉUEHPE0PEPEPEPE PE}tiEPPE8PE PEPEPE PE}t2EXPE@PE(PEPEPE P‰ t&ÉUDž0E@$E Ph8P Dž44;E|E Ph8P t&0P8PEP$ЉB,UR 00 E@$뵐t&0uE@$4iÉUh,EEUP E PEPt UEP1ÉU@hPEEP E ;EuE}uhhj t&EPPE(PPE PhEP} uE;P t9UPE PtPEPu PEPEP ZDž;~7EPh,P uEP 1vÉU M MEEEU@( EU@0JEU@8J0E@H]EU@(JEU@0J EU@8J8E@P]EU@(JEU@0J(EU@8J@E@X]EUEBHX(EUEBPX0EUEBXX8ÍvU$M MM MEU@(bH]EU@0bP]EU@8bX]EE܋EUE UEJUEJ0X(EUEJUEJ UEJ8X0EUEJUEJ(UEJ@X8ÍvUEPhEP ÉUEPhEP 01.01./symop.lib$SYMMETRY_LIBTrying symmetry library %s index %d char [%c] something wrong in symmetrya = %d, string [%s] a = %d , b = %d, val %Lf %Lf ApAprFailed to open symmetry file%d %d %d %s %sGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.rel.data.bss.note.rodata.rel.rodata.comment@ !  +L 1  ;P @P Fh N  Z =[ c@    )B<LS[Dlq\tRj 41GUpsymmetry.cgcc2_compiled.symm_filenamefind_symm_filenameExpand1stEnvVarstderrfprintffree_space_groupfreeread_coordinate_specdebuggingprintfserious_erroratoi__ctype_bread_operatorread_symmetry_operationsfgetsfind_space_groupmallocfill_space_groupfopenfscanfstrcmpfractionalize_atomun_fractionalize_atomfractionalizetraverse_file_atom_recordsun_fractionalize   $ * 3 R";RZ$U%*F @w)  #[d"  "  $(,048<@DHLPTX\`dhlptx|  $(,048<@DHLPTX\`dhlptx|util.o/ 975708856 6685 165 100644 6880 ` ELF4( U S} ~E hh h EE;E|6U EU EE E EÍvUSEE =~hh$h t&E;|%vEMEE΋t&]ÍvUEU )Љ‰U=}h)h0h t&E;E|'EUэ EEϋt&ÉU EEeE88E]EÉUEE;E |UUEEÉUEPE PEPh@PEPE PEPh@PÐUWVE}cEEPE PPEPhhhhEPE}uEPE PEŋEE PPEPhhe^_ÉU UUjEEPPhEP 01.01s>BUFSIZEswaputil.cSTKP>MAXSTACKpushSTKP<0pop@A non-fatal error in %s (%s): %s sleep_while_file%s (%s): %d sleeps for %d seconds until %s disappears. : ZZZzzz..... r%s (%s): %d wakes up after %d seconds. ctime= %sGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@]! @ + 1D6D<` Dr=M  "'C0596>E>OV^e`v} =util.cgcc2_compiled.STACKSTKPswapnonfatalpushpopranfrandomfillarraystderrfprintfstdoutsleep_while_filegetpidprintffopenfclosesleepprt_timetimectime',16  '4=EJOT ,17KPVo /@KTutils.o/ 975708866 6685 165 100644 3920 ` ELF04( U}uhE P*t&EPEPRE Ph E PUEt= ttIt&EPE PhPcvEPE Ph6PCvE PhPP PEPhePjdUEt9 ttEEPE PhiPcvEPE Ph}PCvE PhP PEPhePÉU=uEPE PEP UEP;U ~EU t&1ÉUEPUEUE;E ~,E EB;E uE E]Et&E;E|;EEB;E uEEt&E1&ÉUEU @(b(]EU @0b0]EU @8b8]EMEMEM$vÉU1UzCuUzBuÉU1UzCuUzAuÉU1UzCuUz ut&ÉU1UzNuUz uÉU1UzOuUz uÉUS1ۋEPuExOuEx5uEx*t]ÍvU}t EPÐUEEPEPPjEPEPUÉUEPEEPEPUUEPPREEPEPUÉUEEUM EEUPU EUUf% fuEӍvEUUf%fu &E̋EUЀ8t EUЀ8 tEUM E01.01 NULL atom %3.3s%-4d/%4.4sserious error: %s [ %s ] serious error: %s [ %d ] serious error: %s [ ] warning: %s [ %s ] warning : %s [ %d ] warning : %s [ GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@!  +16<D=M0    "H08HFMWdl$y.^"("L&t""I Fh0%>07INXblvutils.cgcc2_compiled.debuggingprint_an_atomfprintfserious_errorstderrcall_exitgive_warningwarningsoft_warningnth_atomatom_by_numberatoms_distancesqrtis_cbis_cais_cis_nis_oisCAorPmaybe_freefreestream_from_stringtmpfilestrlenfwriterewindmalloc_and_zeromallocbzeronew_stringstrcpyread_residue_specatoi__ctype_bmaximum_xmaximum_ymaximum_zmaximum_rminimum_xminimum_yminimum_zminimum_r  6? y~          ). 4 IN T ej p x    '9 J!V"s$% $')$*U*vectors.o/ 975708875 6685 165 100644 5932 ` ELFP4( UE]M E Et&E;E uEE]EE Et&ÉUEE]M EEE;E uEEE]EEىEÐUEU ]MEE EvE;Eu&EU E]EEE ѐEÐUEE ]ME E EE;Eu'EE E]EE E EUEEE]EEM EEEE;E u?EEEEEuEEE]EEEEEE븍&UÍvUEEE]EEM EEEE;E u;EEEEEuEEE]EEEEEE뵋UÍvUEEE]EEUEEEM EEEE;E uAEEEEEuEEE]EEEUEEEE&ÉUEEE]EEUEEEM Et&EEE;E uDEEEEEuEEE]EEEUEEEE&ÉUE]EEM Et&E;E u'EE]EEEEUEE]EEM EE;E u(EEE]EEEEvÉUEE ]EEEE MEE;Eu4 1E띍Exe[^_U8WVSE EȋUȍEȋEPEȋEȉE̋EEȋE@?EEEȋE;E rEEEEEȋE;E rHUEȋUMEȋEȋEU]EuE]E뭐t&ED@u h@UEȋUuEE?E&EEȋE;E r}EEEȋE;ErUEȋUMEȋEȋE]EEEȋE;ErZEEȋEȍM]Eȋ] ]}4 E 1E]E띍&UEȋU] EȋEE؋EEEEEEȋEȉEEEȋE;E r UEȋUMEȋEȋE]EEEȋE;ErZEEȋEȍM]Eȋ] ]}4 E 1E]E띍&UEȋU] EȋEE؋EUEȋUEE U]uE]EEȋEȉEEEEȋE;EE&EEȋE;E rUEȋUMEȋEȋE]EEȋEȍM]Eȋ] ]u< 9EUEȋU] EȋEEEEG&EEȋUEUEȋŰMMEUEȋUMEȉ UEȋUMEȋEȋED@u5UEȋUMEȋEȋE#B D;E HEȋE9EUEȋU] EȋEE4]E@EEEȋE;E rNEEȋEȍM]Eȋ] ]u< 9MEEEut&ẺEȋEPe[^_ÉUWVSEEEEE;E rEEEEEEUEEEEEE]UEUMME}|hEEEEt&EEE;ErFEEEM]E] ]E E]EEE@t EEEEUEUEEEE HE}} t&EEEEEE]E@EEEE;E rJEEEM]E] ]E E]E몍t&UEU] ]}4 E41EM2e[^_U SE PEEE;E rvEE;E r!EEDEՋEED?EPEPE PEPEvE;E r8EM]MMEE6EP]ÍvUSEE;E r+vUU] E ]EEv]@(#) vectors.h version 3.1 (1/14/93)01.01@(#) vectors.c version 3.3 (3/15/93)singular matrix in LU decomposition GCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@! 8 + % 1H6H<`e D=M   ( %"%*R2TS:_@`HhM}RlY`dgjqtx$~(0WPL h tQvectors.cgcc2_compiled.ident_hident_cvsumby3vsumsqrdvdotvdotby3vminvmaxvminbyvmaxbyvsumbyvsumsqrbyvdotbydvdivvxformgatherdgathermgatherludcmpmallocerrorfreelubksbluinvrtludetbg; }e/206 975708887 6685 165 100644 4604 ` ELF4( USEE;|EUE8-E@8-u]C1t&jEPE@P uZ} t7E;~ ]EP 0E@;~ ]CUE5t&1]ÍvUhÉUhvhhÍvUEEEE E}jhtjjhEjhEhtEht jhE}tEPhE}tEPhE}tEPhE}tjEPEPEPEP ÉUEE;|1kt&\EPERE}u$t=u뵐t&U륐t&ÉUEEPE}u?E;u 18(ERhj 1 UÉUEEPE}uEEE@@D@uhEEExAt W&EEExhtAEEEPh:0EEEPh:|EEExHt &1ÉUEUJt M HtUSEUM ыZt!ˉXt]UXWS_1(EP_P_Purj1hPthPtS1hPthPtS hPtmh_P_P__݅`X Phhh!hgPMtDP_P_P__݅`Xth_h_P__@$hhh!hP_@ $hhh!hPh_h _P__@$hh#h!hP_@ $hh$h!hP_[_01.01CYS(!STREQ(res->resname,'CYS'))yh_mbg_util.c%s [%d]: %s res->number%s [%d]: %s = %d res->resname%s [%d]: %s = %s fgFeEdis c(strlen(s2) > max)(strlen(s) > strlen(s2))s2%%%ds%s%s%3.3d:%4.4s %6.6s%5d %4.4s%c%3.3s %c%4d%c %8.3Lf%8.3Lf%8.3Lf%6.2Lf%6.2Lf%6.6s%5d %3.3s%c%3.3s %c%4d%c %8.3Lf%8.3Lf%8.3Lf%6.2Lf%6.2Lf %6.2lf %6.2lf %2d %6.2lf %2d %5.1f%s res->startres->endres->indexN terminusATOM?LYSNZGLYO(SS)d.T[0]SGad->eradius%s [%d]: %s = %f ad->eradsqCBGCC: (GNU) egcs-2.91.66 19990314/Linux (egcs-1.1.2 release).symtab.strtab.shstrtab.text.rel.text.data.bss.note.rodata.comment@!  +D1D6D<` Dp=M  -0BIPX0hxvtn5* H Q( m: D cUX ~[ ck u  yh_mbg_util.cgcc2_compiled.FlagAllAtomsInCYSfind_atom_residuestrcmpstderrfprintfAtomIndexInFileStreqWithSpacesPrintFieldstrpbrksprintfstrlenprintfSubsPercentmallocstrcpySubsTildestring_from_optioncommand_line_argWriteExtendedRecordfputsfputcwrite_pdb_allwrite_pdb_recordWriteExtendedFiledebug_resprevious_residueNtermOK_atomstrncmpswitch_onswitch_offnew_read_standard_volumesInitTokensTokenizeLineStrEqInclusiveTrueBetweenPstrstrfind_residue_typefind_atom_definitionO \e sz      4IXhq+:GP  *16; A PW\a g sz   0X &3 O^   "  =        . 8 = B  H  W a f k  q                 g  x "         %: B ` h ? )N *e q +  +  +  + , -.7/]glq w ././"' - DNSX ^ fk.{/