If these radii are used in any published work, please reference: J Tsai, R Taylor, C Chothia & M Gerstein (1999). "The Packing Density in Proteins: Standard Radii and Volumes," J. Mol. Biol. 290: 253-266. ProtOr98 Atom Radii and Volumes - contains atomic group radii (again), resulting volumes, and protein atomic groups belonging to each atom type - create as a union of TS5H.con and TS5H-wc.a-vols-cond files (editted by hand) ProtOr99 Residue Volumes - taken from the Totals of the TS5H-wc.a-vols file (editted by hand) ProtOr99.* = TS5H.* mbg95.173vols.dat = xalatoms.New950427 ORIGINS OF FILES: use TS5H as atomtyping and radii typing - ~/code/voronoi_radii/paperI/our_typing/TS5H.* - took rd and ad straight - editted the con file use the BL+ atom selection (baclw) ran: nWataWat_Vradii.alpha -method 4 -weed_level wc \ -types_file TS5H.ad -res_file TS5H.rd \ -outname tab-8_nWataWat-SCOP1.75pdb/TS5H-wc * note: pdblist was linked to pdblist-scop.xtal-sort-1.75.pdbs output: - ~/code/voronoi_radii/runs/tab-8_nWataWat-SCOP1.75pdb/TS5H-wc.*