|
name1 |
-- |
Primary ID, e.g. YAL003W or chri__1234 |
|
name2 |
-- |
secondary name |
| |
name3 |
-- |
name for alternate feature annotation |
|
chromosome |
-- |
Uppercase Roman numerals used (I - XVI) |
|
start |
-- |
Integer, where the orf starts, counting from first nucleotide of the chromosome |
|
end |
-- |
Integer, where the orf ends |
|
sense |
-- |
plus (+) or minus (-) |
|
frame |
-- |
0, 1, or 2, counting from first nucleotide of the chromosome |
| * |
type1 |
-- |
'gene', only where applicable |
| * |
type2 |
-- |
'whorf' |
| * |
type3 |
-- |
'torf' |
| * |
CAI |
-- |
Codon Adaptation Index (floating point) |
| * |
expr_level |
-- |
Young expression level |
| * |
transposons |
-- |
number of transposon insertions |
| * |
tags |
-- |
SAGE tags in feature region and strand |
| * |
mips |
-- |
MIPS class for genes, from 1 to 6 (or 'u' if undefined) |
|
overlap_gene |
-- |
Integer, MIPS class of overlapped gene where applicable, or Paul H.'s comments |
|
inside_gene |
-- |
Integer, MIPS class of overlapped gene where applicable, or Paul H.'s
comments |
|
cebrat |
-- |
annotation by
Cebrat et al. |
|
zhang |
-- |
simply 'BAD' if included in Zhang et al.'s list of false genes |
|
NT |
-- |
raw nucleotide sequence- YOU DO NOT WANT TO VIEW THIS IN A
BROWSER! |
|
AA |
-- |
translation (excluding start and stop codons)- YOU DO NOT WANT TO VIEW THIS IN A
BROWSER! |
| |
| * |
Fields considered highly informative to determine whether it is a gene
|
