Comparison of SMART and our Combined method: the number of domains 
each method found in the following C. elegans ORFs:

ORF   SMART  Combined
--------------------------
R05D8.a	13	15
K10C3.3	2	1
ZK617.1a	23	29
ZK617.1b	22	29
T21D12.9a	3	2
T03G11.8	2	2
T21D12.9b	3	2
F58A3.2	3	3
C09D8.2	3	3
F41D9.3	3	3
C37C3.6b	1	1
C36F7.3a	1	1
C36F7.3b	1	1
D2013.4	1	1
T17A3.1	3	2
F55C7.7a	1	1
F55C7.7c	1	1
C33F10.5	3	3
C33F10.6	1	1
C25G4.10	2	1
Y38F1A.j	1	1
Y39E4B.f	2	1
T17A3.8	1	1
T04A11.3	1	1
F02G3.1	4	5
C53B7.1	2	1
C14F5.2	2	2
C18F3.2	3	3
C18F3.3	1	1
ZK377.2	1	1
ZK377.3	4	4
C24G7.5	1	1
F54D7.4	1	1
Y50E8A.c	1	1
ZC101.2a	16	10
ZC101.2b	2	2
K09C8.5	2	2
F21C10.7	6	6
ZC101.2c	14	8
ZC101.2e	17	11
T19B4.7	3	2
K02E10.8	4	4
C09D1.1	26	51
F22D3.6	1	1
F54E2.3	8	15
F54E2.4	3	3
C27B7.7	1	3
W06H8.c	4	8
Y94H6A_148.d	4	4
F42F12.2	2	2
K07E12.1	6	5
F12F3.2	17	19
C26G2.1	5	6
F12F3.3	8	11
H05O09.1	1	3
C09C7.1	2	2
C36F7.4	1	1
F59F3.1	4	1
K09E2.4	4	3
SSSD1.1	2	2
F15G9.4a	47	46
F15G9.4b	47	46
F59F3.5	3	1
B0273.4a	1	1
B0273.4b	1	1
C18A11.7	1	2
Y48A6A.1	2	2

Total sum of domains by SMART: 382
Total sum of domains by Combined: 410