Table Name
|
Size (kb),
Format
|
Links
|
Fields
(keys bold)
|
Description
|
fold occurrence
|
5 k, tab delim.
|
data,
head
|
fold_, count
|
Number of times each fold (represented by two scop fid numbers) occurs in genome CE
This table should be sorted into a standard order.
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20
|
fold occurrence ceonly
|
5 k, tab delim.
|
data,
head
|
fold_, count
|
Number of times each fold (represented by two scop fid numbers) occurs in genome CE
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20The table should be sorted into a standard order, with the minscop one containing 990 entries.The current restriction is [_ceonly]
|
genome v minscop
|
674 k, tab delim.
|
data,
head
|
did_, gid_, TargStart_I, TargStop_n, QryStart_n, QryStop_n, ev_f, swsc_n, swid_f
|
Result of running genome CE against Ted's minscop (scop 1.35)
|
gid of minscop matches
|
19 k, tab delim.
|
data,
head
|
|
|
minscop occurrence
|
10 k, tab delim.
|
data,
head
|
did_, count
|
Number of times each minscop domain id (did) occurs in genome CE
This table should be sorted into a standard order and contain 990 entries.
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20
|
minscop occurrence ceonly
|
10 k, tab delim.
|
data,
head
|
did_, count
|
Number of times each minscop domain id (did) occurs in genome CE
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20The table should be sorted into a standard order, with the minscop one containing 990 entries.The current restriction is [_ceonly]
|
minscop soluble matches
|
200 k, tab delim.
|
data,
head
|
gid_, TargStart_I, TargStop_n, did, fids, QryStart_n, QryStop_n, ev_f, swsc_n, swid_f
|
These are the good matches to an e-value cutoff of .01
for just the soluble proteins, scop classes 1-5,7
This is with a year cutoff of 97
good_scop_matches_to_mask_w_yr() running on genome CE...
...with year cutoff of 97 and table genome_v_minscop
|
minscop soluble matches no overlap
|
185 k, tab delim.
|
data,
head
|
gid_, TargStart_I, TargStop_n, did, fids, QryStart_n, QryStop_n, ev_f, swsc_n, swid_f
|
These are the good matches to an e-value cutoff of .01
for just the soluble proteins, scop classes 1-5,7
This table is the result of filtering out the matches from
minscop_soluble_matches that hit the same sequence on the genome.
|
minscop soluble matches overlap
|
16 k, tab delim.
|
data,
head
|
gid_, TargStart_I, TargStop_n, did, fids, QryStart_n, QryStop_n, ev_f, swsc_n, swid_f
|
These are the good matches to an e-value cutoff of .01
for just the soluble proteins, scop classes 1-5,7
This table is the matches from
minscop_soluble_matches that hit the same sequence on the genome.
That is, it contains duplicate matches that should not be used.
|
seq
|
7711 k, fasta
|
data,
head
|
|
|
sfam occurrence
|
8 k, tab delim.
|
data,
head
|
sfam_, count
|
Number of times each sfam (represented by three scop fid numbers) occurs in genome CE
This table should be sorted into a standard order.
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20
|
sfam occurrence ceonly
|
8 k, tab delim.
|
data,
head
|
sfam_, count
|
Number of times each sfam (represented by three scop fid numbers) occurs in genome CE
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20The table should be sorted into a standard order, with the minscop one containing 990 entries.The current restriction is [_ceonly]
|
worm only p10
|
132 k, tab delim.
|
data,
head
|
|
|