For Genome CE-wp16, Tables with Specific Analysis

Table Name Size (kb), Format Links Fields (keys bold) Description
fold occurrence 5 k, tab delim. data, head fold_, count

Number of times each fold (represented by two scop fid numbers) occurs in genome CE
This table should be sorted into a standard order.
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20


fold occurrence ceonly 5 k, tab delim. data, head fold_, count

Number of times each fold (represented by two scop fid numbers) occurs in genome CE
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20The table should be sorted into a standard order, with the minscop one containing 990 entries.The current restriction is [_ceonly]


genome v minscop 674 k, tab delim. data, head did_, gid_, TargStart_I, TargStop_n, QryStart_n, QryStop_n, ev_f, swsc_n, swid_f

Result of running genome CE against Ted's minscop (scop 1.35)


gid of minscop matches 19 k, tab delim. data, head



minscop occurrence 10 k, tab delim. data, head did_, count

Number of times each minscop domain id (did) occurs in genome CE
This table should be sorted into a standard order and contain 990 entries. 
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20


minscop occurrence ceonly 10 k, tab delim. data, head did_, count

Number of times each minscop domain id (did) occurs in genome CE
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20The table should be sorted into a standard order, with the minscop one containing 990 entries.The current restriction is [_ceonly]


minscop soluble matches 200 k, tab delim. data, head gid_, TargStart_I, TargStop_n, did, fids, QryStart_n, QryStop_n, ev_f, swsc_n, swid_f

These are the good matches to an e-value cutoff of .01 
for just the soluble proteins, scop classes 1-5,7
This is with a year cutoff of 97
good_scop_matches_to_mask_w_yr() running on genome CE...
...with year cutoff of 97 and table genome_v_minscop 


minscop soluble matches no overlap 185 k, tab delim. data, head gid_, TargStart_I, TargStop_n, did, fids, QryStart_n, QryStop_n, ev_f, swsc_n, swid_f

These are the good matches to an e-value cutoff of .01 
for just the soluble proteins, scop classes 1-5,7
This table is the result of filtering out the matches from 
minscop_soluble_matches that hit the same sequence on the genome. 


minscop soluble matches overlap 16 k, tab delim. data, head gid_, TargStart_I, TargStop_n, did, fids, QryStart_n, QryStop_n, ev_f, swsc_n, swid_f

These are the good matches to an e-value cutoff of .01 
for just the soluble proteins, scop classes 1-5,7
This table is the matches from 
minscop_soluble_matches that hit the same sequence on the genome. 
That is, it contains duplicate matches that should not be used. 


seq 7711 k, fasta data, head



sfam occurrence 8 k, tab delim. data, head sfam_, count

Number of times each sfam (represented by three scop fid numbers) occurs in genome CE
This table should be sorted into a standard order.
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20


sfam occurrence ceonly 8 k, tab delim. data, head sfam_, count

Number of times each sfam (represented by three scop fid numbers) occurs in genome CE
Using no_overlap (minscop_soluble_matches_no_overlap) for CE, 1998,12.20The table should be sorted into a standard order, with the minscop one containing 990 entries.The current restriction is [_ceonly]


worm only p10 132 k, tab delim. data, head



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