YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload
J Lin, M Gerstein (2000). Genome Res 10 : 808-18.
M Gerstein (1998). Proteins 33 : 518-34.
Dinucleotide 20A _ Amino Acid 20A _Dinucleotide 20 _ Amino Acid 20
20 Dint raw _ 20 AA 20 raw _ 8 AA raw _ 8 AA per _ 8 dint raw _ 8 dint _

Tree Based On Dinucleotide Composition Percentages
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[B] SelectView:taxonomycompositionfoldsuperfamilyoldCOGnewCOGrRNAtree
Tree [download]Organism
Yale Resources
Superkingdom
Kingdom
Phylum
Class
Aaeo
Aquificales
Aquificaceae
Aquifex
Phor
Euryarchaeota
Thermococcales
Thermococcaceae
Bsub
Firmicutes
Bacillus/Clostridium_group
Bacillus/Staphylococcus_group
Syne
CyanoBacteria
Chroococcales
Synechocystis
Aful
Euryarchaeota
Archaeoglobales
Archaeoglobaceae
Ecol
ProteoBacteria
gamma_subdivision
EnteroBacteriaceae
Tpal
Spirochaetales
Spirochaetaceae
Treponema
Mthe
Euryarchaeota
MethanoBacteriales
MethanoBacteriaceae
Mtub
Firmicutes
ActinoBacteria
Actinobacteridae
Mpne
Firmicutes
Bacillus/Clostridium_group
Mollicutes
Scer
Fungi
Ascomycota
Hemiascomycetes
Hpyl
ProteoBacteria
epsilon_subdivision
Helicobacter_group
Hinf
ProteoBacteria
gamma_subdivision
Pasteurellaceae
Cele
Metazoa
Nematoda
Chromadorea
Mgen
Firmicutes
Bacillus/Clostridium_group
Mollicutes
Mjan
Euryarchaeota
Methanococcales
Methanococcaceae
Bbur
Spirochaetales
Spirochaetaceae
Borrelia
Rpro
ProteoBacteria
alpha_subdivision
Rickettsiales
Cpne
Chlamydiales
Chlamydiaceae
Chlamydophila
Ctra
Chlamydiales
Chlamydiaceae
Chlamydia
Organisms that are not in the Tree
Pfa2
Alveolata
Apicomplexa
Haemosporida
Hpy2
ProteoBacteria
epsilon_subdivision
Helicobacter_group
Lei1
Euglenozoa
Kinetoplastida
Trypanosomatidae
Aper
Crenarchaeota
Desulfurococcales
Desulfurococcaceae
Tmar
Thermotogales
Thermotoga
N/A
Pfa3
Alveolata
Apicomplexa
Haemosporida
Drad
Thermus/Deinococcus_group
Deinococcales
Deinococcus
Cjej
ProteoBacteria
epsilon_subdivision
Campylobacter_group
Nmen
ProteoBacteria
beta_subdivision
Neisseriaceae
Nme2
ProteoBacteria
beta_subdivision
Neisseriaceae
Ctr2
Chlamydiales
Chlamydiaceae
Chlamydia
Cpn2
Chlamydiales
Chlamydiaceae
Chlamydophila
Dmel
Metazoa
Arthropoda
Tracheata
Hsap
Metazoa
Chordata
Craniata

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