#MAKE SURE YOU EDIT THE FILE IN UNIX... WINDOWS PUTS WRONG CHARACTERS ppp-2212 Transaldolase Ecol Hinf Ecol Drad Mtub Nma Nmen Cjej Hpj Hpyl Syne Cpa Cpne Cmur Ctra Scer Scer END ppp-11144 Phosphogluconate dehydrogenase Ecol Syne Bsub Tmar Bbur Drad Aaeo Mtub Mtub Cpne Cmur Ctra Tpal Scer Dmel Cele Hsap Hinf Nmen END ppp-5316 Ribose 5-phosphate isomerase A Ecol Hinf Nmen Drad Aper Cpne Cmur Ctra Mthe Aful Bbur Mtub Uure Mpne Mgen Syne Ecol Bsub Aaeo Tmar Hpyl Rpro Cjej Mjan Syne Mmus Cele Tpal Scer Paby Phor END ppp-5131 Ribulose-phosphate 3-epimerase Ecol Hinf Nmen Aaeo Cpne Cmur Ctra Mjan Tmar Uure Mpne Mgen Cjej Hpyl Bsub Tpal Cele Drad Syne Mtub Spom Scer END ppp-2211 Transketolase Ecol Hinf Nmen Tpal Cpne Cmur Ctra Bsub Drad Uure Mpne Mgen Tmar Tpal Hpyl Aper Paby Mjan Cele Hsap Mmus Cjej Hpyl Syne Aaeo Mtub Spom Scer END ppp-11149 Glucose-6-phosphate 1-dehydrogenase Hpyl Aaeo Bbur Cpne Ctra Tpal Mtub Tmar Hpyl Mtub Scer Cele Hsap Dmel Nmen Ecol Tpal Hinf Bbur Bsub Cpne Ctra Mtub Drad Tmar Syne END tca-1814 TCA Enzyme Nmen Mjan Mthe Mpne Mgen Mtub Bsub Rpro Tmar Aaeo Mtub Aper Syne Cpne Cmur Ctra Drad Nmen Rpro Hsap Cele Scer Spom Bsub Drad Nmen Hinf Ecol END tca-23161 Succinyl-trasferase Ecol Hinf Rpro Cpne Cmur Ctra Spom Hsap Cele Mtub Scer Nmen Bsub Drad END tca-41149 non-pure TCA Ecol Hinf Cjej Bsub Drad Scer END tca-4136 non-pure TCA Ecol Hinf Drad Mtub Aper Cele Hinf Ecol END tca-4213 Aconitase Bsub Drad Aper Ecol Mtub Rpro Nmen Cjej Hpyl Syne Ecol Nmen Aaeo Scer Hsap Cele Mmus Cele END tca-6215 Succinyl-CoA synthetase Ecol Hinf Cpne Cmur Ctra Drad Syne Aaeo Aper Mthe Mjan Aful Drad Mtub Aaeo Cpne Cmur Ctra Bsub Cjej Rpro Nmen Hinf Ecol Aful Aper Mthe Mjan Mtub Cjej Aaeo Bsub Nmen Cele Rpro END tca-11137 Malate dehydrogenase Rpro Cjej Aful Mthe Mjan Bsub Syne Aaeo Aper Ecol Bsub Hinf Ecol PAB Phor Mthe Mjan Hsap Cpne Cmur Ctra Drad Mtub Scer Scer F20 Hsap Hinf Ecol END gly-12112 Glyceraldehyde-3P dehydrogenase Hpyl Cjej Mpne Mgen Nmen Ecol Aper Aful Paby Phor Mthe Mjan Aaeo Bsub Nmen Bbur Drad Tmar Mtub Tpal Cpne Cmur Ctra Scer Syne Spom Hsap Dmel Cele Hinf Ecol END gly-27111 Phospho-fructokinase Aaeo Tmar Cele Hsap Mmus Dmel Spom Scer Mtub Syne Tmar Drad Bsub Uure Mtub Ecol Mpne Mgen Hinf Ecol END gly-2712 Glucokinase Hpyl Nmen Ecol Syne Tmar Hinf Drad Bsub Aper Hsap Scer END gly-27140 Pyruvate kinase Ecol Hinf Nmen Tmar Aper Mjan Uure Mpne Mgen Cele Dmel Hsap Mmus Spom Scer Ecol Cpne Cmur Ctra Bbur Cjej Bsub Syne Syne Paby Phor Drad Mtub END gly-2723 Phosphoglycerate kinase Mgen Mpne Uure Scer Cele Dmel Mmus Hsap Mmus Tmar Drad Mtub Aper Paby Phor Aful Mthe Mjan Tpal Bbur Syne Bsub Ctra Cpne Hpyl Aaeo Cjej Nmen Hinf Ecol END gly-41213 Aldolase Ctra Cmur Cpne Ecol Dmel Hsap Cele Syne Mtub Spom Scer Cjej Bbur Hinf Ecol Bsub Uure Mpne Mgen Drad Hpyl Tmar Aaeo Tpal Syne Nmen END gly-42111 Enolase Mthe Aful Spom Mtub Drad Syne Cpne Cmur Ctra Cjej Hpyl Tmar Aaeo Bsub Nmen Tpal Bbur Hinf Ecol Uure Mpne Mgen Scer Cele Dmel Hsap Mmus Aper Mjan Paby Phor END gly-5311 Triose-phosphate isomerase Hpyl Cjej Uure Aper Aful Mjan Mthe Paby Phor Scer Hsap Dmel Bbur Tmar Cpne Nmen Cmur Ctra Tpal Mpne Mgen Aaeo Syne Bsub Drad Mtub Hinf Ecol END gly-5319 Glucose-6-phosphate isomerase Ecol Hinf Scer Syne Tmar Cjej Aaeo Mjan Bsub Mpne Mgen Tpal Bbur Cpne Cmur Ctra Drad Mtub Nmen Hpyl Dmel Hsap Mmus END gly-5422 Phospholglycerate mutase Mtub Syne Ecol Nmen Bsub Cpne Cmur Ctra Tpal Bbur Hsap Cele Spom Scer END gly-31311 Fructose-1,6-bisphosphatase Hpyl Cjej Nmen Hsap Scer Bsub Syne Hinf Ecol END gly-3617 Glycolysis Misc. Tmar Aful Bsub Drad Ecol Paby Aper Dmel Hsap END path-2 TCA Cycle Protein 1: 1814 Nmen Nma? Mjan Mthe Mpne Mgen Mtub Bsub Rpro Tmar Aaeo Aper Mtub Mtub Syne Cpa? Cpne Cmu? Ctra Dmel Nma? Nmen Rpro Hsap Cele Scer Spo? Spo? Bsub Dmel Nma? Nme? Hinf Ecol END path-1 Sequence Similarity of Dimethyladenosine transferase (rRNA methylation) Mgen Mpne Syne Hpyl Ecol Hinf Mjan Scer END 8-orf-0030 Sequence Similarity of Dimethyladenosine transferase (rRNA methylation) Mgen Mpne Syne Hpyl Ecol Hinf Mjan Scer END 8-orf-0072 Sequence Similarity of Phenylalanyl-tRNA synthetase beta subunit Hpyl Syne Hinf Ecol Mgen Mpne Mjan Scer END 8-orf-0089 Sequence Similarity of Ribosomal protein L23 Syne Hpyl Mgen Mpne Mjan Scer Ecol Hinf END 8-orf-0092 Sequence Similarity of Ribosomal protein S3 Syne Mgen Mpne Mjan Scer Hpyl Ecol Hinf END 8-orf-0125 Sequence Similarity of Thymidylate kinase Scer Mgen Mpne Ecol Hinf Hpyl Mjan Syne END 8-orf-0149 Sequence Similarity of Triosephosphate isomerase Mjan Mgen Mpne Hpyl Scer Syne Ecol Hinf END 8-orf-0126 Sequence Similarity of 3-phosphoglycerate kinase Hpyl Mjan Mgen Mpne Ecol Hinf Syne Scer END 8-orf-0166 Sequence Similarity of Glucose-6-phosphate isomerase Syne Hpyl Scer Ecol Hinf Mjan Mgen Mpne END 8-orf-0200 Sequence Similarity of Ribosomal protein L15 Hpyl Mgen Mpne Syne Ecol Hinf Scer Mjan END 8-orf-0250 Sequence Similarity of Transcription antiterminator NusG/RfaH Hpyl Syne Mjan Scer Mgen Mpne Ecol Hinf END 8-orf-0256 Sequence Similarity of Ribosomal protein L18 Mgen Mpne Mjan Scer Ecol Hinf Syne Hpyl END 8-orf-0525 Sequence Similarity of Valyl-tRNA synthetase Hpyl Mjan Mgen Mpne Scer Syne Ecol Hinf END 8-orf-0552 Sequence Similarity of Signal recognition particle GTPase FtsY Hpyl Syne Mgen Mpne Ecol Hinf Mjan Scer END 8-cog-c Occurrence of COGs involved in Energy production and conversion Mpne Mgen Mjan Scer Hinf Hpyl Syne Ecol END 8-cog-e Occurrence of COGs involved in Amino acid transport and metabolism Mpne Mgen Hpyl Mjan Hinf Scer Syne Ecol END 8-cog-f Occurrence of COGs involved in Nucleotide transport and metabolism Mpne Mgen Hpyl Mjan Scer Hinf Syne Ecol END 8-cog-g Occurrence of COGs involved in Carbohydrate transport and metabolism Mpne Mgen Mjan Hpyl Hinf Scer Syne Ecol END 8-cog-h Occurrence of COGs involved in Coenzyme metabolism Mpne Mgen Mjan Hinf Scer Hpyl Syne Ecol END 8-cog-i Occurrence of COGs involved in Lipid metabolism Mpne Mgen Mjan Hinf Scer Hpyl Syne Ecol END 8-cog-j Occurrence of COGs involved in Translation, ribosomal structure and biogenesis Mjan Scer Mpne Mgen Hpyl Syne Hinf Ecol END 8-cog-k Occurrence of COGs involved in Transcription Mjan Scer Syne Hinf Ecol Hpyl Mpne Mgen END 8-cog-l Occurrence of COGs involved in DNA replication, recombination and repair Mjan Scer Mpne Mgen Syne Ecol Hpyl Hinf END 8-cog-m Occurrence of COGs involved in Cell envelope biogenesis, outer membrane Mpne Mgen Scer Mjan Hinf Hpyl Syne Ecol END 8-cog-n Occurrence of COGs involved in Cell motility and secretion Scer Mpne Mgen Mjan Hpyl Hinf Syne Ecol END 8-cog-o Occurrence of COGs involved in Posttranslational modification, protein turnover, chaperones Mjan Mpne Mgen Hpyl Syne Scer Hinf Ecol END 8-cog-p Occurrence of COGs involved in Inorganic ion transport and metabolism Mpne Mgen Scer Mjan Syne Ecol Hpyl Hinf END 8-cog-r Occurrence of COGs whose general function is a prediction only Mpne Mgen Mjan Scer Syne Ecol Hpyl Hinf END 8-aa-freq Absolute Amino Acid Count in 8 Genmoes Ecol Scer Syne Hinf Hpyl Mjan Mgen Mpne END 8-aa-per Amino Acid Percentages for 8 Genomes Ecol Syne Hinf Scer Hpyl Mjan Mgen Mpne END 8-dint-freq Absolute Dinucleotide Count for 8 Genomes Ecol Scer Syne Hinf Mjan Hpyl Mgen Mpne END 8-dint-per Dinucleotide Composition for 8 Genomes Ecol Syne Mpne Scer Hinf Hpyl Mgen Mjan END 8-dint-freq Absolute Dinucleotide Count for 8 Genomes Ecol Scer Syne Hinf Mjan Hpyl Mgen Mpne END 8-ribo-ssu Small Subunit Ribosomal RNA for 8 Genomes Scer Mjan Mpne Mgen Syne Hpyl Hinf Ecol END 8-sfam-dist Superfamily Occurrnece with Distance Method for 8 Genomes Mjan Hpyl Scer Syne Ecol Hinf Mgen Mpne END 8-sfam-pars Superfamily Occurrence with Parsimony Method for 8 Genomes Mjan Hpyl Scer Syne Ecol Hinf Mgen Mpne END 8-fold-pars-2 Fold Occurrence with Parsimony Method for 8 Genomes Mjan Mpyl Scer Syne Ecol Hinf Mpne Mgen END 8-fold-dist Fold Occurrence with Distance Method for 8 Genomes Syne Scer Hinf Ecol Hpyl Mjan Mgen Mpne END 8-fold-pars Fold Occurrence with Parsimony Method for 8 Genomes Syne Scer Hinf Ecol Hpyl Mjan Mgen Mpne END 8-dint-per Dinucleotide Percentages for 8 Genomes Ecol Syne Mpne Scer Hinf Hpyl Mgen Mjan END 20-dint-per Dinucleotide Percentages for 20 Genomes Aaeo Phor Bsub Syne Aful Mthe Ecol Mtub Tpal Mpne Scer Hpyl Hinf Cele Mgen Mjan Bbur Rpro Cpne Ctra END 20-dint-freq Absolute Dinucleotide Totals for 20 Genomes Aaeo Phor Mthe Aful Syne Mtub Bsub Ecol Cele Scer Hinf Hpyl Bbur Mjan Rpro Cpne Tpal Ctra Mgen Mpne END 20-aa-per Amino Acid Percentages for 20 Genomes Aaeo Mjan Phor Aful Mthe Syne Ecol Mtub Tpal Cpne Ctra Bsub Hinf Cele Scer Mpne Hpyl Mgen Bbur Rpro END 20-aa-freq Absolute Amino Acid Totals for 20 Genomes Aaeo Mjan Hinf Mthe Phor Aful Syne Bsub Ecol Mtub Cele Scer Hpyl Bbur Tpal Cpne Ctra Rpro Mgen Mpne END 20-fold-pars Fold Occurrence with Parsimony Method for 20 Genomes Ctra Cpne Rpro Hpyl Aaeo Syne Bsub Hinf Ecol Mtub Scer Cele Mthe Aful Phor Mjan Mgen Mpne Tpal Bbur END 20-fold-dist Fold Occurrence with Distance Method for 20 Genomes Ctra Cpne Aaeo Syne Bsub Mtub Hinf Ecol Scer Cele Mthe Aful Phor Mjan Rpro Hpyl Tpal Bbur Mgen Mpne END 8-cog-all Occurrence of All COGs for 8 Genomes Mpne Mgen Mjan Scer Hpyl Hinf Syne Ecol END 8-cog-meta Occurrence of Metabolism Subset of COGs for 8 Genomes Mpne Mgen Mjan Hpyl Scer Hinf Syne Ecol END 8-cog-info Occurrence of Information Subset of COGs for 8 Genomes Mjan Scer Mpne Mgen Hpyl Syne Hinf Ecol END 8-cog-cell Occurrence of Cellular Processes Subset of COGs for 8 Genomes Mpne Mgen Mjan Scer Syne Ecol Hpyl Hinf END 8-fold-a Occurrence of Alpha Folds Mjan Mgen Mpne Scer Hpyl Syne Hinf Ecol END 8-fold-b Occurence of Beta Folds Mjan Hpyl Ecol Syne Hinf Scer Mgen Mpne END 8-fold-ab Occurrence of AB Folds Mgen Mpne Mjan Hpyl Scer Syne Hinf Ecol END 8-fold-apb Occurrence of Alpha plus Beta Folds Scer Hpyl Scer Hinf Ecol Mjan Mgen Mpne END #make sure behind fold-a 8-fold-all Occurrence of All Folds Mjan Mgen Mpne Scer Hpyl Syne Hinf Ecol END #make sure behind fold-all 8-fold-all-pars Occurrence of All Folds using Parsimony Mjan Hpyl Scer Syne Ecol Hinf Mpne Mgen END 8-ribo-lsu Sequence Similarity of the Large Subunit Ribosomal RNA for 8 Genomes Mjan Scer Syne Mgen Mpne Hpyl Hinf Ecol END 20-ribo-ssu Sequence Similarity of Small Subunit Ribosomal RNA Cele Scer Mjan Phor Mthe Aful Aaeo Mtub Bsub Mpne Mgen Hpyl Rpro Ecol Hinf Bbur Tpal Syne Cpne Ctra END comp-aa-per Amino Acid Composition Percentages Aaeo Mjan Phor Aful Mthe Syne Ecol Mtub Tpal Cpne Ctra Bsub Hinf Cele Scer Mpne Hpyl Mgen Bbur Rpro END comp-aa Amino Acid Composition Absolute Values Aaeo Mjan Hinf Mthe Phor Aful Syne Bsub Ecol Mtub Cele Scer Hpyl Bbur Tpal Cpne Ctra Rpro Mgen Mpne END comp-dint-per Dinucleotide Composition Percentages Aaeo Phor Bsub Syne Aful Ecol Tpal Mthe Mtub Mpne Scer Hpyl Hinf Cele Mgen Mjan Bbur Rpro Cpne Ctra END trad8 Traditional 16S Ribosomal Subunit of 8 Mgen END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END trad20 Traditional 16S Ribosomal Subunit Cele Scer Mjan Phor Mthe Aful Aaeo Mtub Bsub Mpne Mgen Hpyl Rpro Ecol Hinf Bbur Tpal Syne Cpne Ctra END 20-sfam-pars Occurrence of All Superfamilies using Parsimony Aful Mjan Phor Mthe Aaeo Syne Scer Cele Mtub Bsub Ecol Hinf Hpyl Rpro Mgen Mpne Bbur Tpal Ctra Cpne END 20-sfam-dist Occurrence of All Superfamilies Using Distance Aful Mjan Phor Mthe Scer Cele Aaeo Syne Ecol Hinf Bsub Mtub Hpyl Rpro Mgen Mpne Bbur Tpal Ctra Cpne END