Pseudogenic annotations of C. elegans chromosomes

Paul Harrison, Nathaniel Echols, and Mark Gerstein
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Full paper with figures [PDF]

Main pseudogenes site

Display annotations

Enter an ORF, transposable element, or protein ID (SCOP or SWISS-PROT) to search for:

Examples: B0281.2, YJA7_YEAST, d1ap0__

Select a region of a chromosome and genomic features to view:

Select additional features to display: [ Genes ] [ Individual exons ]
from to
Chromosome e-value

Or enter an ORF and range around which to display annotations:

Select additional features to display: [ Genes ] [ Individual exons ]
ORF: Range (+/-):
e-value

Note: Blue and bracketed categories are from original Sanger center GFF files, the most recent versions of which are available at www.wormbase.org

Additional resources		Links
Download annotations file (3.2 MB, tarred and gzipped) Distribution of genes and pseudogenes along chromosomes Amino acid composition data Pseudogene vs. gene ratios for individual families Protein fold usage for genes and pseudogenes		General ORF search with links and annotations Genome overview page WormBase

Yale University Department of Molecular Biochemistry and Biophysics