Comprehensive Survey of Processed Pseudogenes in the Mouse Genome

We have identified ~5000 processed pseudogenes plus ~700 duplicated pseudogenes in a recent draft mouse genome (Assembly 14.30.1) .
 

Publications

• Comparative analysis of processed pseudogenes in the mouse and human genomes.
  Z Zhang, N Carriero and M Gerstein. Trends in Genetics (Feb. 2004, in press) .

Results

• EBI mouse proteome set that was used as TBLASTN query  (7.0 Mb )  
• Help on the file format
• Processed pseudogenes
  • annotations   txt   (0.7 MB),   excel   (1.6 MB),   help 
  • nucleotide sequences   (3.8 MB)  help 
  • amino acid sequence   (3. MB)  help 
• Processed pseudogenes grouped by chromosomes
  • annotations
  • nucleotide sequences
  • amino acid sequence
• Occurrences of processed pseudogenes among mouse genes
  
  • txt   (92 KB)  excel   (241 KB)  help 
• The processed pseudogenes in the human genome.

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