Comprehensive Survey of Processed Pseudogenes in the Human Genome

We have identified ~8000 processed pseudogenes plus ~4000 duplicated pseudogenes in the latest GoldenPath human draft genome.
You can either interatively search an online database, or download the relevant data and texts from this page.
 

Publications

• Zhang et al. Genome Research (2003) in press.

Results

• online database
• EBI human proteome set used as TBLASTN query  sequences (9.7 MB)  names only (0.5 MB)
• Help on the file format
• Processed pseudogenes
  • annotations   txt   (1.2 MB),   excel   (3.0 MB),   help 
  • nucleotide sequences   (6.5 MB)  help 
  • amino acid sequence   (4.7 MB)  help 
  • individual sequence alignment:   clustal format  (24.4 MB) 
  • multiple sequence alignment:   clustal format  (14.6 MB),   phylip format  (12.1 MB) 
  • multiple sequence alignment, including putative pseudogenes:   clustal format  (15.6 MB),   phylip format  (12.9 MB) 
• Processed pseudogenes grouped by chromosomes
  • annotations
  • nucleotide sequences
  • amino acid sequence
• Occurrences of processed pseudogenes among human proteins
  
  • txt   (0.4 MB)  excel   (0.8 MB)  help 
• Putative Processed pseudogenes
  • annotations   (0.11 MB) help
  • nucleotide sequences   (0.45 MB) help
  • amino acid sequence   (0.33 MB) help
  • individual sequence alignment:   clustal format  (1.7 MB) 
• Putative processed pseudogenes grouped by chromosomes
  • annotations
  • nucleotide sequences
  • amino acid sequence
• The processed pseudogenes in the mouse genome.

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