### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl at Fri Nov 21 22:52:29 EST 1997 ### with pid 14186 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ value 1 SS ##_ value 2 HP ##_ value 3 EC ##_ value 4 MG ##_ value 5 MP ##_ value 6 HI ##_ value 7 MJ ##_ value 8 SC ##_ value 9 sortidex ##_ value 10 totexist ##_ value 11 totfolds ##_ value 12 did ##_ value 13 pdb ##_ value 14 sel ##_ value 15 foldnam ##_ value 16 SS ##_ value 17 HP ##_ value 18 EC ##_ value 19 MG ##_ value 20 MP ##_ value 21 HI ##_ value 22 MJ ##_ value 23 SC ### .........................................................................., Report on the fold usage in the genomes SS HP EC MG MP HI MJ SC derived from merging sfam_name and the many sfam_occurrence. It also contains the name of each fold and a best representative scop domain id (did), with associated pdb id and residue selection. totfolds = total number of a given fold in all the genomes totfolds = how many genomes a given fold exists in sortidx = totexist + totfolds / 1000 The final columns just given a representation of whether or not the fold exists in a given genome. ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl at Sat Nov 22 04:05:15 EST 1997 ### with pid 17972 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ value 1 SS ##_ value 2 HP ##_ value 3 EC ##_ value 4 MG ##_ value 5 MP ##_ value 6 HI ##_ value 7 MJ ##_ value 8 SC ##_ value 9 sortidex ##_ value 10 totexist ##_ value 11 totfolds ##_ value 12 bestrep ##_ value 13 N_minsp ##_ value 14 N_scp ##_ value 15 pdb ##_ value 16 sel ##_ value 17 objnam ##_ value 18 SS ##_ value 19 HP ##_ value 20 EC ##_ value 21 MG ##_ value 22 MP ##_ value 23 HI ##_ value 24 MJ ##_ value 25 SC ### .........................................................................., Report on the fold usage in the genomes SS HP EC MG MP HI MJ SC derived from merging descrip_sfam and the many sfam_occurrence. It also contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. bestrep = a best representative (scop domain id) N_minsp = the number in minscop N_scop = the number in all of scop (1.35) objname = the name for structure objects totfolds = total number of a given fold in all the genomes totfolds = how many genomes a given fold exists in sortidx = totexist + totfolds / 1000 The final columns just given a representation of whether or not the fold exists in a given genome. ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl at Sat Nov 22 04:07:52 EST 1997 ### with pid 18170 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ value 1 SS ##_ value 2 HP ##_ value 3 EC ##_ value 4 MG ##_ value 5 MP ##_ value 6 HI ##_ value 7 MJ ##_ value 8 SC ##_ value 9 sortidex ##_ value 10 totexist ##_ value 11 totfolds ##_ value 12 bestrep ##_ value 13 N_minsp ##_ value 14 N_scp ##_ value 15 pdb ##_ value 16 sel ##_ value 17 objnam ##_ value 18 SS ##_ value 19 HP ##_ value 20 EC ##_ value 21 MG ##_ value 22 MP ##_ value 23 HI ##_ value 24 MJ ##_ value 25 SC ### .........................................................................., Report on the fold usage in the genomes SS HP EC MG MP HI MJ SC derived from merging descrip_sfam and the many sfam_occurrence. It also contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. bestrep = a best representative (scop domain id) N_minsp = the number in minscop N_scop = the number in all of scop (1.35) objname = the name for structure objects totfolds = total number of a given fold in all the genomes totfolds = how many genomes a given fold exists in sortidx = totexist + totfolds / 1000 The final columns just given a representation of whether or not the fold exists in a given genome. ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl at Sat Nov 22 04:25:52 EST 1997 ### with pid 18558 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ value 1 SS ##_ value 2 HP ##_ value 3 EC ##_ value 4 MG ##_ value 5 MP ##_ value 6 HI ##_ value 7 MJ ##_ value 8 SC ##_ value 9 sortidex ##_ value 10 totexist ##_ value 11 totfolds ##_ value 12 bestrep ##_ value 13 N_minsp ##_ value 14 N_scp ##_ value 15 pdb ##_ value 16 sel ##_ value 17 objnam ##_ value 18 SS ##_ value 19 HP ##_ value 20 EC ##_ value 21 MG ##_ value 22 MP ##_ value 23 HI ##_ value 24 MJ ##_ value 25 SC ### .........................................................................., Report on the fold usage in the genomes SS HP EC MG MP HI MJ SC derived from merging descrip_sfam and the many sfam_occurrence. It also contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. bestrep = a best representative (scop domain id) N_minsp = the number in minscop N_scop = the number in all of scop (1.35) objname = the name for structure objects totfolds = total number of a given fold in all the genomes totfolds = how many genomes a given fold exists in sortidx = totexist + totfolds / 1000 The final columns just given a representation of whether or not the fold exists in a given genome. ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl at Sat Nov 22 15:26:04 EST 1997 ### with pid 25651 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ value 1 SS ##_ value 2 HP ##_ value 3 EC ##_ value 4 MG ##_ value 5 MP ##_ value 6 HI ##_ value 7 MJ ##_ value 8 SC ##_ value 9 sortidex ##_ value 10 totexist ##_ value 11 totfolds ##_ value 12 bestrep ##_ value 13 N_minsp ##_ value 14 N_scp ##_ value 15 pdb ##_ value 16 sel ##_ value 17 objnam ##_ value 18 SS ##_ value 19 HP ##_ value 20 EC ##_ value 21 MG ##_ value 22 MP ##_ value 23 HI ##_ value 24 MJ ##_ value 25 SC ### .........................................................................., Report on the fold usage in the genomes SS HP EC MG MP HI MJ SC derived from merging descrip_sfam and the many sfam_occurrence. It also contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. bestrep = a best representative (scop domain id) N_minsp = the number in minscop N_scop = the number in all of scop (1.35) objname = the name for structure objects totfolds = total number of a given fold in all the genomes totfolds = how many genomes a given fold exists in sortidx = totexist + totfolds / 1000 The final columns just given a representation of whether or not the fold exists in a given genome. ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 01:47:24 EST 1997 ### with pid 32073 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ value 1 class ##_ value 2 class2 ##_ value 3 C ##_ value 4 Fold# ##_ value 5 SS ##_ value 6 HP ##_ value 7 EC ##_ value 8 MG ##_ value 9 MP ##_ value 10 HI ##_ value 11 MJ ##_ value 12 SC ##_ value 13 total ##_ value 14 SF ##_ value 15 Fam. ##_ value 16 PDB ##_ value 17 Rep. ##_ value 18 Struc. ##_ value 19 Fold ##_ value 20 Name ##_ value 21 totexist ##_ value 22 sortidx ##_ value 23 did ##_ value 24 fids ##_ value 25 SS ##_ value 26 HP ##_ value 27 EC ##_ value 28 MG ##_ value 29 MP ##_ value 30 HI ##_ value 31 MJ ##_ value 32 SC ### .........................................................................., Detailed report on the fold usage in the genomes SS HP EC MG MP HI MJ SC This large joined table is derived from merging the minscop table, descrip_sfam, and the many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold C = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): ->store(id_,class,class2,C,Fold#, @genomes,total,SF,Fam.,PDB, Rep.,Struc.,Fold Name,totexist,sortidx,did,fids,@genomes) ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 01:57:55 EST 1997 ### with pid 32367 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 id_ ##_ value 1 class ##_ value 2 class2 ##_ value 3 C ##_ value 4 Fold# ##_ value 5 SS ##_ value 6 HP ##_ value 7 EC ##_ value 8 MG ##_ value 9 MP ##_ value 10 HI ##_ value 11 MJ ##_ value 12 SC ##_ value 13 total ##_ value 14 SF ##_ value 15 Fam. ##_ value 16 PDB ##_ value 17 Rep. ##_ value 18 Struc. ##_ value 19 Fold ##_ value 20 Name ##_ value 21 totexist ##_ value 22 sortidx ##_ value 23 did ##_ value 24 fids ##_ value 25 SS ##_ value 26 HP ##_ value 27 EC ##_ value 28 MG ##_ value 29 MP ##_ value 30 HI ##_ value 31 MJ ##_ value 32 SC ### .........................................................................., Detailed report on the fold usage in the genomes SS HP EC MG MP HI MJ SC This large joined table is derived from merging the minscop table, descrip_sfam, and the many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold C = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): ->store(id_,class,class2,C,Fold#, @genomes,total,SF,Fam.,PDB, Rep.,Struc.,Fold Name,totexist,sortidx,did,fids,@genomes) ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 02:04:11 EST 1997 ### with pid 32706 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 class2 ##_ value 3 C ##_ value 4 Fold# ##_ value 5 SS ##_ value 6 HP ##_ value 7 EC ##_ value 8 MG ##_ value 9 MP ##_ value 10 HI ##_ value 11 MJ ##_ value 12 SC ##_ value 13 total ##_ value 14 SF ##_ value 15 Fam. ##_ value 16 PDB ##_ value 17 Rep. ##_ value 18 Struc. ##_ value 19 Fold ##_ value 20 Name ##_ value 21 totexist ##_ value 22 sortidx ##_ value 23 did ##_ value 24 fids ##_ value 25 longid ##_ value 26 SS ##_ value 27 HP ##_ value 28 EC ##_ value 29 MG ##_ value 30 MP ##_ value 31 HI ##_ value 32 MJ ##_ value 33 SC ### .........................................................................., Detailed report on the fold usage in the genomes SS HP EC MG MP HI MJ SC This large joined table is derived from merging the minscop table, descrip_sfam, and the many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold C = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): ->store(obj_id_,class,class2,C,Fold#, @genomes,total,SF,Fam.,PDB, Rep.,Struc.,Fold Name,totexist,sortidx,did,fids,longid,@genomes) ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 02:05:24 EST 1997 ### with pid 174 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 class2 ##_ value 3 C ##_ value 4 Fold# ##_ value 5 SS ##_ value 6 HP ##_ value 7 EC ##_ value 8 MG ##_ value 9 MP ##_ value 10 HI ##_ value 11 MJ ##_ value 12 SC ##_ value 13 total ##_ value 14 SF ##_ value 15 Fam. ##_ value 16 PDB ##_ value 17 Rep. ##_ value 18 Struc. ##_ value 19 Fold ##_ value 20 Name ##_ value 21 totexist ##_ value 22 sortidx ##_ value 23 did ##_ value 24 fids ##_ value 25 longid ##_ value 26 SS ##_ value 27 HP ##_ value 28 EC ##_ value 29 MG ##_ value 30 MP ##_ value 31 HI ##_ value 32 MJ ##_ value 33 SC ### .........................................................................., Detailed report on the fold usage in the genomes SS HP EC MG MP HI MJ SC This large joined table is derived from merging the minscop table, descrip_sfam, and the many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold C = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): ->store(obj_id_,class,class2,C,Fold#, @genomes,total,SF,Fam.,PDB, Rep.,Struc.,Fold Name,totexist,sortidx,did,fids,longid,@genomes) ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 02:07:02 EST 1997 ### with pid 399 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 class2 ##_ value 3 C ##_ value 4 Fold# ##_ value 5 SS ##_ value 6 HP ##_ value 7 EC ##_ value 8 MG ##_ value 9 MP ##_ value 10 HI ##_ value 11 MJ ##_ value 12 SC ##_ value 13 total ##_ value 14 SF ##_ value 15 Fam. ##_ value 16 PDB ##_ value 17 Rep. ##_ value 18 Struc. ##_ value 19 Fold ##_ value 20 Name ##_ value 21 totexist ##_ value 22 sortidx ##_ value 23 did ##_ value 24 fids ##_ value 25 longid ##_ value 26 SS ##_ value 27 HP ##_ value 28 EC ##_ value 29 MG ##_ value 30 MP ##_ value 31 HI ##_ value 32 MJ ##_ value 33 SC ### .........................................................................., Detailed report on the fold usage in the genomes SS HP EC MG MP HI MJ SC This large joined table is derived from merging the minscop table, descrip_sfam, and the many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold C = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): ->store(obj_id_,class,class2,C,Fold#, @genomes,total,SF,Fam.,PDB, Rep.,Struc.,Fold Name,totexist,sortidx,did,fids,longid,@genomes) ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 02:39:05 EST 1997 ### with pid 857 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 SS ##_ value 4 HP ##_ value 5 EC ##_ value 6 MG ##_ value 7 MP ##_ value 8 HI ##_ value 9 MJ ##_ value 10 SC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 SS ##_ value 26 HP ##_ value 27 EC ##_ value 28 MG ##_ value 29 MP ##_ value 30 HI ##_ value 31 MJ ##_ value 32 SC ### .........................................................................., Detailed report on the fold usage in the genomes SS HP EC MG MP HI MJ SC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): # \$fold_report->store($obj_id_,$csym2{$class},$foldnum, # @tuple,$totfolds,$N_minsp, # $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, # $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 04:06:20 EST 1997 ### with pid 1754 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 04:13:46 EST 1997 ### with pid 2017 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 04:29:19 EST 1997 ### with pid 2325 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 05:46:21 EST 1997 ### with pid 3439 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 05:53:09 EST 1997 ### with pid 3706 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 06:36:20 EST 1997 ### with pid 4198 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 06:40:52 EST 1997 ### with pid 4441 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 07:23:38 EST 1997 ### with pid 4995 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Nov 23 07:27:53 EST 1997 ### with pid 5234 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ........................................................................... ### Table unsorted_sfams_report ### ~~~~~ ### associated with file ./db/FOLD-report/unsorted_sfams_report.txt. ### has delimiter / / ### generated by script fold-usage-report.pl, ### has key fields ( ,obj_id_ ) ( ,0 ) ### which is being interpreted by perl at Sun Dec 28 18:15:58 EST 1997 ### with pid 19144 on nj.csb.yale.edu. ### .........................................................................., ##_ key 0 obj_id_ ##_ value 1 class ##_ value 2 Fold# ##_ value 3 MG ##_ value 4 MP ##_ value 5 MJ ##_ value 6 HP ##_ value 7 SS ##_ value 8 HI ##_ value 9 SC ##_ value 10 EC ##_ value 11 total ##_ value 12 Fam. ##_ value 13 PDB ##_ value 14 Rep. ##_ value 15 Struc. ##_ value 16 Name ##_ value 17 totexist ##_ value 18 sortidx ##_ value 19 SF ##_ value 20 nclass ##_ value 21 class2 ##_ value 22 did ##_ value 23 fids ##_ value 24 longid ##_ value 25 MG ##_ value 26 MP ##_ value 27 MJ ##_ value 28 HP ##_ value 29 SS ##_ value 30 HI ##_ value 31 SC ##_ value 32 EC ### .........................................................................., Detailed report on the fold usage in the genomes MG MP MJ HP SS HI SC EC This large joined table is derived from merging the following tables: minscop, descrip_sfam, and many sfam_occurrence. It contains the name of each fold, a best representative scop domain id (did), with associated pdb id and residue selection, the number of times the fold appears in scop and minscop. Some of the most important fields are described below. did = a best representative (scop domain id) Fam. = the number in minscop (number of seq. families) PDB = the number of these domains in the PDB, according to scop 1.35 Name = the name for this fold object total = total number of a given fold in all the genomes totexist = how many genomes a given fold exists in sortidx = totexist + total / 1000 SF = whether or not the fold is a superfold class = a representation for the fold's class Fold# = scop fold number corresponding to the domain The final columns just given a representation of whether or not the fold exists in a given genome. Here are the actual db storing lines (for reference): $fold_report->store($obj_id_,$csym2{$class},$foldnum, @tuple,$totfolds,$N_minsp, $N_scop,$pdbsel{$did},$name,$totexist,$sortidx,$superfold, $class,$csym{$class},$did,$fids,$a,\@tuple_exist); ### ...........................................................................