id_	bestrep	N_minsp	N_scop	objname
1.001.001.001	d1flp__	8	340	Globin-like
1.001.002.001	d1grj_1	1	1	GreA transcript cleavage protein, Nt-dom.
1.001.002.002	d1hdj__	1	2	Chaperone J-domain
1.001.002.003	d1srya1	1	8	Seryl-tRNA synthetase (SerRS), Nt-dom.
1.001.002.004	d1idsa1	1	22	Fe,Mn superoxide dismutase (SOD), Nt-dom.
1.001.003.001	d1ctj__	9	78	Cytochrome c
1.001.004.001	d1enh__	10	45	Homeodomain-like
1.001.004.002	d1sfe_1	1	1	Ada DNA repair protein, Ct-dom.
1.001.004.003	d1lea__	7	30	Winged DNA-binding domain
1.001.005.001	d1dtr_2	1	3	Diphtheria toxin repressor (DtxR) dimerization domain
1.001.006.001	d1tns__	1	2	Mu transposase, DNA-binding domain
1.001.007.001	d2spca_	1	2	Spectrin repeat unit
1.001.008.001	d1bdd__	1	4	Immunoglobulin-binding protein A modules
1.001.009.001	d1bal__	1	5	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1.001.010.001	d2erl__	3	5	Protozoan pheromone proteins
1.001.011.001	d2abd__	1	2	Acyl-CoA binding protein
1.001.012.001	d0mts__	0	1	Methionyl-tRNA synthetase, probable anticodon-binding domain
1.001.013.001	d2end__	1	5	T4 endonuclease V
1.001.014.001	d1lis__	1	3	Lysin
1.001.015.001	d1bmfg_	1	3	F1-ATPase, gamma subunit
1.001.016.001	d1lbu_1	1	1	Zn2+ DD-carboxypeptidase, the Nt-dom.
1.001.017.001	d1hme__	2	11	HMG-box
1.001.018.001	d1bfma_	3	8	Histone-fold
1.001.019.001	d1mmog_	1	2	Methane monooxygenase hydrolase, gamma subunit
1.001.020.001	d1nfn__	1	5	Apolipoprotein
1.001.020.002	d2asr__	1	7	Aspartate receptor, ligand-binding domain
1.001.020.003	d1apc__	3	15	Cytochromes
1.001.020.004	d1hrb__	1	21	Hemerythrin
1.001.020.005	d2tmvp_	1	3	Viral coat proteins
1.001.020.006	d1buca1	1	6	Acyl-CoA dehydrogenase (flavoprotein), Ct-dom.
1.001.021.001	d1fha__	5	54	Ferritin-like
1.001.022.001	d1gnc__	11	47	4-helical cytokines
1.001.023.001	d1acp__	1	1	Acyl carrier protein
1.001.023.002	ds017__	0	2	Colicin E immunity proteins
1.001.024.001	d1rpo__	1	7	ROP protein
1.001.025.001	d1ytfb1	2	2	Transcription factor IIA (TFIIA), Nt-dom.
1.001.026.001	d1eci.1	0	1	Ectatomin, A & B chains
1.001.027.001	d1pou__	6	44	lambda repressor-like DNA-binding domains
1.001.028.001	d2tct_1	2	3	TetR/NARL DNA-binding domain
1.001.029.001	d1coo__	1	1	the Ct-dom. of RNA polymerase alpha subunit
1.001.030.001	d1mdya_	1	5	Helix-loop-helix DNA-binding domain
1.001.031.001	d4icb__	10	90	EF-hand
1.001.031.002	d1cpo_1	2	4	Cloroperoxidase
1.001.032.001	d1para_	2	24	Met repressor-like
1.001.033.001	d1dsba1	1	2	Disulphide-bond formation facilitator (DSBA), insertion domain
1.001.034.001	d2gsta1	2	60	Glutathione S-transferases, Ct-dom.
1.001.035.001	d1bmta1	1	2	Methionine synthase domain
1.001.036.001	d1c5a__	1	2	Anaphylotoxins (complement system)
1.001.037.001	d1occh_	1	2	Cytochrome c oxidase subunit h
1.001.038.001	d1hyp__	3	6	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
1.001.039.001	d1bno__	0	93	DNA polymerase beta, N-terminal (8 kD)-domain
1.001.040.001	d1olga_	1	48	p53 tetramerization domain
1.001.041.001	d1adt_1	1	6	A domain of early E2A DNA-binding protein, ADDBP
1.001.042.001	d1hnr__	2	8	Prokaryotic DNA-bending protein
1.001.043.001	d1alo_1	1	1	Aldehyde oxidoreductase, domain 2
1.001.044.001	d1aep__	1	1	Apolipophorin-III
1.001.045.001	d1axn__	1	17	Annexin
1.001.046.001	d1tada1	1	14	Transducin (alpha subunit), insertion domain
1.001.047.001	d1trla_	1	24	Thermolysin-like metalloproteases, Ct-dom.
1.001.048.001	d2ts1_1	1	8	Tyrosyl-tRNA synthetase, middle domain
1.001.049.001	d1bmfa1	2	18	The Ct-dom. of alpha and beta subunits of F1 ATP synthase
1.001.050.001	d1gds__	1	3	HIV-1 capsid protein, N-terminal core domain
1.001.051.001	d1tam__	1	9	Retroviral matrix proteins
1.001.052.001	d1finb1	6	16	Cyclin-like
1.001.053.001	d1llp__	3	62	Heme-dependent peroxidases
1.001.054.001	d2abk__	1	2	DNA-glycosylase
1.001.055.001	d1gln_1	1	1	Anticodon-binding (C-terminal) domain of glutamyl-tRNA synthetase (GluRS)
1.001.056.001	d1rlr_1	1	1	R1 subunit of ribonucleotide reductase, Nt-dom.
1.001.057.001	d1dnpa1	1	2	FAD-binding (C-terminal) domain of DNA photolyase
1.001.058.001	d1lla_1	1	10	Hemocyanin, N-terminal and middle domains
1.001.059.001	d2pgd_1	1	6	6-phosphogluconate & Acyl-CoA dehydrogenases, Ct-dom.
1.001.060.001	d1utg__	1	6	Uteroglobin-like
1.001.061.001	d1gai__	3	8	Glycosyltransferases of the superhelical fold
1.001.062.001	d1csh__	1	16	Citrate synthase
1.001.063.001	d1phc__	2	31	Cytochrome P450
1.001.064.001	d1fiaa_	1	8	FIS protein
1.001.065.001	d1prcc_	1	1	Photosynthetic reaction centre (cytochrome subunit)
1.001.066.001	d3wrp__	1	21	Trp repressor
1.001.067.001	d1aora1	1	2	Aldehyde ferredoxin oxidoreductase, Ct-dom.s
1.001.068.001	d1vnc__	1	1	Vanadium-containing chloroperoxidase
1.001.069.001	d1bvp11	1	6	Bluetongue virus coat protein vp7 (BTV-10 vp7), alpha-helical domain
1.001.070.001	d0lpc__	0	1	Lipovitellin-phosvitin complex, superhelical domain
1.001.070.002	d1sly_1	1	1	bacterial muramidases
1.001.070.003	ds024__	0	2	14-3-3 protein
1.001.070.004	d1occe_	1	2	Cytochrome c oxidase subunit e
1.001.071.001	d2sblb1	1	2	Lipoxigenase, Ct-dom.
1.001.072.001	d2tct_2	1	2	Tetracyclin repressor (Tet-repressor, TetR), Ct-dom.
1.001.073.001	d1lbd__	1	3	Ligand-binding domain of nuclear receptor
1.001.074.001	ds028__	0	2	Phospholipase C/P1 nuclease
1.001.075.001	ds029__	0	1	Serum albumin
1.001.076.001	ds031__	0	2	Class II fumarase/aspartase
1.001.077.001	d1fps__	1	1	Isoprenyl diphosphate synthases
1.001.078.001	d1oela1	1	23	GroEL, the ATPase domain
1.001.079.001	d1ecma_	2	5	Chorismate mutase II
1.001.080.001	d1poc__	2	43	Phospholipase A2
1.001.081.001	d1rtm.1	1	9	Mannose-binding protein A, triple coiled-coil domain
1.001.081.002	d1zta__	2	25	Leucine zipper domain
1.001.081.003	d1ifj__	3	13	Inovirus (filamentous phage) major coat protein
1.001.081.004	d2tmaa_	0	2	Tropomyosin
1.002.001.001	d1maj__	32	769	Immunoglobulin
1.002.001.002	d1fna__	6	19	Fibronectin type III
1.002.001.003	d1bgla1	2	32	beta-Galactosidase, domains 2 and 4
1.002.001.004	d1fiea2	2	8	Transglutaminase
1.002.001.005	d1suh__	1	8	Cadherin
1.002.001.006	d2mcm__	1	6	Actinoxantin-like
1.002.001.007	d1jcv__	1	42	Cu,Zn superoxide dismutase
1.002.001.008	d1mspa_	2	3	PapD-like
1.002.001.009	d4kbpa1	1	12	Purple acid phosphatase, Nt-dom.
1.002.002.001	d1ddt_1	1	6	Diphtheria toxin, Ct-dom.
1.002.002.002	d1exg__	2	4	a carbohydrate-binding domain
1.002.002.003	d1tupa_	2	9	Transcription factors p53 and NF-kappa B
1.002.002.004	d1ctm_1	1	1	Cytochrome f, large domain
1.002.003.001	d1kum__	1	18	Starch-binding domain
1.002.003.002	d1ttaa_	1	32	Transthyretin (synonym: prealbumin)
1.002.003.003	d2pcda_	1	12	Protocatechuate-3,4-dioxygenase, alpha and beta chains
1.002.004.001	d1hoe__	1	4	alpha-Amylase inhibitor
1.002.005.001	d1aac__	12	155	Cupredoxins
1.002.006.001	d1rsy__	1	7	C2 domain (Calcium/lipid-binding domain, CaLB)
1.002.006.002	d3dpa_2	1	1	PapD, C-domain
1.002.007.001	d1npoa_	1	6	Neurophysin II
1.002.008.001	d2stv__	17	195	Viral coat and capsid proteins
1.002.009.001	d1dsl__	3	30	Crystallins/protein S/yeast killer toxin
1.002.010.001	d2sblb2	1	2	Lipoxigenase, Nt-dom.
1.002.010.002	d1hpla1	1	7	Colipase-binding domain
1.002.011.001	d1pgs_1	2	6	Glycosyl-asparaginase
1.002.012.001	d1ecy__	1	7	Ecotin, trypsin inhibitor
1.002.013.001	d1gof_2	3	23	Galactose-binding domain-like
1.002.014.001	d1ahsa_	2	43	Segmented RNA-genome viruses' proteins
1.002.015.001	d1knb__	1	1	Adenovirus type 5 fiber protein, knob domain
1.002.016.001	d1tnra_	1	10	Tumor necrosis factor
1.002.017.001	d1thw__	1	4	Thaumatin
1.002.018.001	d1jbc__	8	151	ConA-like lectins/glucanases
1.002.019.001	d1bgla4	1	16	beta-Galactosidase, domain 5
1.002.019.002	d1oaca1	1	2	Copper amine oxidase, domain 4 (catalytic)
1.002.020.001	d1umua_	2	5	the Ct-dom. of biotin, diphtheria toxin and LexA repressors
1.002.020.002	d1nyf__	4	44	SH3-domain
1.002.020.003	d2mysa1	2	5	Myosin S1 fragment, Nt-dom.
1.002.020.004	ds037__	0	1	R67 dihydrofolate reductase
1.002.020.005	d1psf__	1	2	Photosystem I accessory protein E (PSAE)
1.002.020.006	d1ihva_	1	4	DNA-binding domain of HIV-1 integrase
1.002.021.001	d1lepa_	2	44	GroES-like
1.002.022.001	ds040_1	0	1	PDZ domain
1.002.023.001	d1whi__	1	1	Ribosomal protein L14
1.002.024.001	d1snc__	9	129	Bacterial pathogens
1.002.024.002	d1krs__	2	10	An anticodon-binding domain
1.002.024.003	ds043__	0	1	Tissue inhibitor of metalloproteinases
1.002.024.004	d1pyp__	2	9	Inorganic pyrophosphatase
1.002.024.005	d1mjc__	1	6	Cold shock DNA-binding domain
1.002.024.006	d1vqb__	3	21	Bacteriophage ssDNA-binding proteins
1.002.024.007	d1rip__	1	1	Ribosomal S17 protein
1.002.025.001	d1prch1	1	7	Photosynthetic reaction centre, H-chain, cytoplasmic domain
1.002.025.002	ds044__	0	1	Epsilon subunit of ATP synthase
1.002.026.001	d4fgf__	3	45	Cytokine
1.002.026.002	d2aaib1	2	4	Plant cytotoxin B-chain (lectin)
1.002.026.003	d1wba__	1	5	Kunitz (STI) inhibitors
1.002.026.004	d1hce__	1	2	Histidine-rich actin-binding protein (hisactophilin)
1.002.027.001	d1fnb_1	3	10	Ferredoxin reductase-like, FAD-linked (N-terminal) domain
1.002.027.002	d1efua1	2	9	Translation factors
1.002.028.001	d1efua2	1	6	EF-Tu, Ct-dom.
1.002.029.001	d1arb__	5	282	Trypsin-like serine proteases
1.002.030.001	d1bco_1	1	3	Mu transposase, Ct-dom.
1.002.031.001	d1bmfa2	2	18	The Nt-dom. of alpha and beta subunits of F1 ATP synthase
1.002.031.002	d1sfta1	1	2	Alanine racemase, Ct-dom.
1.002.032.001	d1hvc__	4	187	Acid proteases
1.002.033.001	d2eng__	2	3	Barwin-like endoglucanases
1.002.034.001	d1gtra1	1	6	Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
1.002.035.001	d1mai__	4	7	PH domain-like
1.002.036.001	d1ytfc1	2	2	Transcription factor IIA (TFIIA), Nt-dom.
1.002.037.001	ds049_1	0	1	Herpesvirus serine proteinase, assemblin
1.002.038.001	d1pkn_1	1	7	Pyruvate kinase beta-barrel domain
1.002.039.001	d1hbq__	7	59	Lipocalins
1.002.040.001	d1stp__	1	32	Avidin/streptavidin
1.002.040.002	d1smpi_	1	1	Metalloprotease inhibitor
1.002.041.001	d2cpl__	1	39	Cyclophilin
1.002.042.001	d1hxn__	2	5	Hemopexin-like domain
1.002.043.001	d2sil__	2	46	Sialidases
1.002.044.001	d1gof_3	1	3	Galactose oxidase, central domain
1.002.044.002	d2bbkh_	1	8	Methylamine dehydrogenase, H-chain
1.002.044.003	d1gp2b_	1	3	Trp-Asp repeat (WD-repeat)
1.002.045.001	d4aaha_	1	2	Methanol dehydrogenase, heavy chain
1.002.045.002	ds005_2	0	1	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
1.002.046.001	d1cdg_3	6	28	alpha-Amylases, beta-sheet domain
1.002.047.001	d1hcb__	1	97	Carbonic anhydrase
1.002.048.001	d3bcl__	1	1	Bacteriochlorophyl A protein
1.002.049.001	d1vmoa_	1	2	Vitelline membrane outer protein-I (VMO-I)
1.002.049.002	d1dlc_2	1	2	delta-Endotoxin (insectocide), middle domain
1.002.050.001	d1jpc__	1	7	alpha-D-mannose-specific plant lectins
1.002.051.001	d1kapp1	1	5	Metalloprotease, Ct-dom.
1.002.052.001	d2pec__	1	3	Pectate lyase
1.002.052.002	d1tsp__	1	1	P22 tailspike protein
1.002.052.003	ds054__	0	1	Virulence factor P.69 pertactin
1.002.053.001	d1lxa__	1	4	Trimeric LpxA-like enzymes
1.002.054.001	d1caua_	2	20	Seed storage 7S proteins
1.002.054.002	d1cgpa2	2	8	cAMP-binding domain
1.002.054.003	d1wapa_	1	22	Trp RNA-binding attenuation protein (TRAP)
1.002.055.001	d1bdo__	3	8	Single hybrid motif
1.002.055.002	d1bnca1	3	4	Rudiment single hybrid motif
1.002.055.003	d1gpr__	1	7	Duplicated hybrid motif
1.002.056.001	ds055__	0	1	Antifreeze protein type III
1.002.056.002	d2kaub_	1	5	Urease, beta-subunit
1.002.056.003	d1dud__	1	4	Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)
1.002.056.004	d1tul__	1	1	ACMNPV telokin-like protein
1.002.057.001	d2kauc1	1	5	alpha-Subunit of urease, composite domain
1.003.001.001	d1byb__	14	81	Glycosyltransferases
1.003.001.002	d1add__	3	10	Metal-dependent hydrolases
1.003.001.003	d1ald__	2	13	Aldolases
1.003.001.004	d1frb__	1	18	NAD(P)-linked oxidoreductase
1.003.001.005	d1onea1	2	26	Enolase & muconate-lactonizing enzyme, Ct-dom.
1.003.001.006	d1oyb__	2	16	FMN-linked oxidoreductases
1.003.001.007	d1igs__	3	7	Tryptophan biosynthesis enzymes
1.003.001.008	d1pkm_2	2	8	Phospho<i>enol</i>pyruvate/pyruvate domain
1.003.001.009	d3rubl1	1	29	RuBisCo, Ct-dom.
1.003.001.010	d1tpe__	1	54	Triosephosphate isomerase (TIM)
1.003.001.011	d6xia__	1	114	Xylose isomerase
1.003.001.012	d1nfp__	1	7	Bacterial luciferase-like
1.003.001.013	d1gym__	2	9	Phosphatidylinositol-specific phospholipase C (PI-PLC)
1.003.001.014	d1reqa1	1	4	Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
1.003.001.015	ds059__	0	1	tRNA-guanine transglycosylase
1.003.001.016	d1sfta2	1	2	Alanine racemase, Nt-dom.
1.003.002.001	d1tml__	1	4	Cellulases
1.003.003.001	d1rlr_2	1	1	ribonucleotide reductase, R1 sub., Ct-dom.
1.003.004.001	d2tmda2	13	132	FAD/NAD(P)-binding
1.003.005.001	d1zyma_	2	3	Phosphohistidine domain
1.003.005.002	d7acn_1	1	10	Aconitase, Ct-dom.
1.003.005.003	d1oela2	1	22	the apical domain of GroEL
1.003.006.001	d1bta__	1	8	Barstar (barnase inhibitor)
1.003.007.001	d1bnh__	1	2	Leucine-rich repeats
1.003.008.001	ds062__	0	2	Crotonase-like
1.003.009.001	d1rvva_	1	30	beta-subunit (capsid) of the lumazine synthase/riboflavin synthase complex
1.003.010.001	d1ice.1	0	1	Interleukin-1beta converting enzyme (a cysteine protease)
1.003.011.001	d1udh__	1	5	Uracil-DNA glycosylase
1.003.012.001	d1mla_1	1	1	Catalytic domain of malonyl-CoA ACP transacylase
1.003.013.001	d4cat_1	0	2	Catalase, Ct-dom.
1.003.013.002	d3chy__	1	19	CheY-like
1.003.013.003	d1scua1	2	4	Succinyl-CoA synthetase domains
1.003.013.004	d2fcr__	3	14	Flavoproteins
1.003.013.005	d1bmta2	3	6	Cobalamin (vitamin B12)-binding domain
1.003.013.006	d1orda1	1	2	Ornithine decarboxylase N-terminal "wing" domain
1.003.013.007	d1cus__	1	40	Cutinase
1.003.013.008	d1esc__	1	3	Esterase
1.003.013.009	d2naca1	3	10	Formate/glycerate dehydrogenases, substrate-binding domain
1.003.014.001	d1fnb_2	3	10	Ferredoxin reductase-like, C-terminal NADP-linked domain
1.003.015.001	d2ts1_2	2	17	Class I aminoacyl-tRNA synthetases (RS), catalytic domain
1.003.015.002	d1gpma1	1	5	N-type ATP pyrophosphatases
1.003.016.001	d1dnpa2	1	2	Nt-dom. of DNA photolyase
1.003.017.001	d2tmda3	2	10	A nucleotide-binding domain
1.003.018.001	d1xel__	16	183	NAD(P)-binding Rossmann Fold
1.003.019.001	d1bnca2	3	9	Biotin carboxylase Nt-dom.-like
1.003.020.001	d1pyda1	2	8	Pyruvate oxidase and decarboxylase, middle domain
1.003.021.001	d1nbaa_	1	4	N-carbamoylsarcosine amidohydrolase
1.003.022.001	d1deaa_	1	6	Glucosamine 6-phosphate deaminase
1.003.023.001	d1pyda2	5	36	Thiamin-binding
1.003.024.001	d1gky__	13	132	P-loop Containing NTP Hydrolases
1.003.025.001	d1chd__	1	1	CheB methylesterase domain (C-terminal residues 152-349)
1.003.026.001	d1sca__	1	45	Subtilases
1.003.027.001	d3cla__	2	15	CoA-dependent acetyltransferases
1.003.028.001	d1phr__	1	3	Phosphotyrosine protein phosphatases I
1.003.029.001	d2hnq__	3	12	(Phosphotyrosine) protein phosphatases II
1.003.030.001	d1srx__	7	83	Thioredoxin-like
1.003.031.001	d1trka3	1	10	Transketolase, Ct-dom.
1.003.032.001	d1pkm_3	1	7	Pyruvate kinase, Ct-dom.
1.003.033.001	d1lcpa1	1	8	Leucine aminopeptidase, Nt-dom.
1.003.034.001	d1htta1	1	5	An anticodon-binding domain of Class II aaRS
1.003.035.001	d1bam__	5	22	Restriction endonucleases
1.003.036.001	d1gdr__	1	6	gamma,delta resolvase, large fragment
1.003.037.001	d1pdo__	1	1	The IIA domain of mannose transporter, IIA-Man
1.003.038.001	d1hpm_1	8	52	actin-like ATPase domain
1.003.038.002	d1chma1	1	2	Creatinase, Nt-dom.
1.003.038.003	d2rn2__	9	57	Ribonuclease H-like
1.003.038.004	d1sfe_2	1	1	Ada DNA repair protein, the middle domain
1.003.039.001	d1tfr__	2	3	5' to 3' exonuclease
1.003.040.001	d3pgm__	2	4	Phosphoglycerate mutase-like
1.003.041.001	d1opr__	3	16	Phosphoribosyltransferases (PRTases)
1.003.042.001	d1zon__	1	9	Integrin A (or I) domain
1.003.043.001	d1cde__	1	7	Glycinamide ribonucleotide transformylase
1.003.044.001	d1vid__	5	16	SAM-dependent methyltransferases
1.003.045.001	d1ama__	4	79	PLP-dependent transferases
1.003.046.001	d1gpma2	1	4	Class I glutamine amidotransferases
1.003.047.001	d1ulb__	2	10	Purine and uridine phosphorylases
1.003.048.001	d2ace__	9	71	alpha/beta-Hydrolases
1.003.049.001	d1masa_	1	2	Purine nucleoside hydrolase
1.003.050.001	d2ctb__	3	27	Zn-dependent exopeptidases
1.003.051.001	d1ra9__	1	67	Dihydrofolate reductases
1.003.052.001	d1gtma2	1	6	Aminoacid dehydrogenases, dimerisation domain
1.003.053.001	d1fua__	1	4	Class II aldolase
1.003.054.001	d1alka_	1	28	Alkaline phosphatase
1.003.055.001	d1xaa__	1	29	Isocitrate/isopropylmalate dehydrogenases
1.003.056.001	d2at2a_	3	105	Asp-carbamoyltransferase, Cat.-chain
1.003.057.001	d1ttqb_	1	4	Tryptophan synthase, beta-subunit
1.003.058.001	d2ora_1	2	6	Rhodanese
1.003.059.001	d7acn_2	1	10	Aconitase, first 3 domains
1.003.060.001	d3pmga1	3	18	Phosphoglucomutase, first 3 domains
1.003.061.001	d3pgk__	1	4	Phosphoglycerate kinase
1.003.062.001	d1mioa_	2	8	Nitrogenase iron-molybdenum protein, alpha and beta chains
1.003.063.001	d2bgu__	2	45	beta-Glucosyltransferase & glycogen phosphorylase
1.003.064.001	d1agx__	1	9	Glutaminase/Asparaginase
1.003.065.001	d3pfk__	1	12	Phosphofructokinase
1.003.066.001	d1ayl__	1	2	Phosphoenolpyruvate carboxykinase (ATP-oxaloacetate carboxy-liase)
1.003.067.001	d2dri__	3	40	Periplasmic binding protein-like I
1.003.068.001	d1lst__	8	60	Periplasmic binding protein-like II
1.003.069.001	d1pxta1	2	4	Thiolase
1.003.070.001	d1ctt_1	2	4	Cytidine deaminase
1.004.001.001	d1fus__	3	124	Microbal ribonucleases
1.004.002.001	d2baa__	6	395	Lysozyme-like
1.004.003.001	d2act__	3	38	Cysteine proteinases
1.004.004.001	d7rsa__	2	77	Ribonuclease A-like
1.004.005.001	d2kaua_	1	5	Urease, gamma-subunit
1.004.006.001	d3il8__	2	54	Interleukin 8-like chemokines
1.004.007.001	d1pmd_1	2	2	Penicillin-binding protein 2x (pbp-2x), c-terminal domain
1.004.008.001	d1sso__	1	2	"histone-like" proteins from arhaea
1.004.009.001	d1kpaa_	3	12	HIT-like
1.004.010.001	d1dar_3	2	5	Ribosomal protein S5 domain 2-like
1.004.011.001	d1igd__	2	11	Immunoglobulin-binding domains
1.004.011.002	d1ubi__	1	6	Ubiquitin
1.004.011.003	d1rfa__	1	2	c-Raf1, Ras-binding domain
1.004.011.004	d1frd__	4	19	2Fe-2S ferredoxin
1.004.011.005	d1esfa2	2	9	Superantigen toxins, Ct-dom.
1.004.011.006	d1tif__	1	1	Translation initiation factor IF3, Nt-dom.
1.004.012.001	d3cox_2	5	33	FAD-linked reductases, Ct-dom.
1.004.013.001	d1dvc__	3	12	Cystatin/monellin
1.004.013.002	d1oaca2	2	4	Copper amine oxidase, domains 2 and 3
1.004.013.003	d1std__	1	2	NTF2-like
1.004.013.004	d1udii_	1	1	Uracil-DNA glycosylase inhibitor protein
1.004.014.001	d1tmca_	1	35	MHC antigen-recognition domain
1.004.015.001	d1aak__	1	2	Ubiquitin conjugating enzyme
1.004.016.001	d1ema__	1	3	Green fluorescent protein
1.004.017.001	ds088__	0	1	Pilin
1.004.018.001	d1fkd__	1	20	FKBP immunophilin/proline isomerase
1.004.018.002	ds089__	0	1	Colicin E3 immunity protein
1.004.018.003	d1ctn_3	1	1	Chitinase A, insertion domain
1.004.018.004	d1grj_2	1	1	GreA transcript cleavage factor, Ct-dom.
1.004.019.001	d1dhy_1	2	5	Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
1.004.020.001	d1mkaa_	1	4	beta-Hydroxydecanol thiol ester dehydrase
1.004.021.001	d1egl__	1	23	CI-2 family of serine protease inhibitors
1.004.022.001	d1tfe__	2	5	Elongation factor Ts (EF-Ts), dimerisation domain
1.004.023.001	d1mnga2	1	22	Fe,Mn superoxide dismutase (SOD), Ct-dom.
1.004.024.001	d1ctf__	1	1	Ribosomal protein L7/12, Ct-dom.
1.004.025.001	d2reb_2	1	2	RecA protein, Ct-dom.
1.004.025.002	ds091__	0	1	Anti-lipopolysaccharide factor
1.004.026.001	d1stu__	2	3	dsRNA-binding domain-like
1.004.026.002	d1pda_2	1	1	Porphobilinogen deaminase (PDA), Ct-dom.
1.004.027.001	d1vih__	1	2	KH-domain
1.004.028.001	d1gpma3	1	4	GMP synthetase, the C-terminal, dimerisation domain
1.004.029.001	d1onea2	3	26	like Enolase, Nt-dom.
1.004.030.001	d1oela3	1	22	The intermediate domain of GroEL
1.004.031.001	d1fxd__	4	26	4Fe-4S ferredoxins
1.004.031.002	d4at1b1	1	39	Aspartate carbamoyltransferase, Regulatory-chain, Nt-dom.
1.004.031.003	d1pba__	2	4	Protease propeptides
1.004.031.004	d1mli__	1	1	Muconalactone isomerase
1.004.031.005	d2pii__	1	2	Signal transducing protein P2 (product of glnB)
1.004.031.006	d1npk__	1	32	Nucleoside diphosphate kinases
1.004.031.007	d1fht__	2	7	RNA-binding domain
1.004.031.008	d2bopa_	2	5	viral DNA-binding domain
1.004.031.009	d3rubl2	2	29	RuBisCO, large subunit, small (N-terminal) domain
1.004.031.010	d1aps__	1	1	Acylphosphatase
1.004.031.011	d1ris__	1	1	Ribosomal protein S6
1.004.031.012	d1dar_4	1	3	Elongation factor G (EF-G), domain V
1.004.031.013	d0rpl__	0	1	Ribosomal protein L30
1.004.031.014	d1regx_	1	2	Translational regulator protein regA
1.004.031.015	ds093__	0	1	Mercuric ion binding protein MerP
1.004.031.016	d1psda3	1	2	Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
1.004.031.017	ds094_1	0	1	NAD-binding domain of HMG-CoA reductase
1.004.031.018	d1mla_2	1	1	Probable ACP-binding domain of malonyl-CoA ACP transacylase
1.004.031.019	d1fwp__	1	1	CheY-binding domain of CheA
1.004.031.020	ds095_1	0	1	Ct-dom. of flavoprotein subunit of p-cresol methylhydroxylase
1.004.032.001	d1vhh__	2	2	Hedgehog/DD-peptidase
1.004.033.001	d1tig__	1	2	Translation initiation factor IF3
1.004.033.002	d1eps__	1	1	5-enol-pyruvyl-3-phosphate synthase
1.004.034.001	d1kpta_	1	2	Virally encoded KP4 toxin
1.004.035.001	d3rubs_	1	19	RuBisCO, small subunit
1.004.036.001	d1dcoa_	1	24	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
1.004.036.002	d1xxaa_	1	18	Ct-dom. of arginine repressor
1.004.037.001	d2chsa_	1	36	Chorismate mutase
1.004.038.001	d1fim__	3	13	Tautomerase/MIF
1.004.039.001	d1gado2	3	42	like G3P dehydrogenase, Ct-dom
1.004.040.001	d1oaca4	1	2	Copper amine oxidase, domain 1
1.004.041.001	d3ssi__	1	5	Subtilisin inhibitor
1.004.042.001	d1msc__	2	18	RNA bacteriophage capsid protein
1.004.043.001	d3grs_3	4	50	FAD/NAD-linked reductases, dimer-dom.
1.004.044.001	d1srsa_	1	2	Serum response factor (SRF) core
1.004.045.001	ds097__	0	2	NADH oxidase/flavine reductase
1.004.046.001	d1ast__	5	63	Metzincins, catalytic (N-terminal) domain
1.004.046.002	d1qba_4	1	2	Bacterial chitobiase, Domain 2
1.004.047.001	d1ayd__	2	35	SH2 domain
1.004.048.001	d2hpr__	1	11	Histidine-containing phosphocarrier proteins (HPr)
1.004.049.001	d1iba__	1	1	Glucose permease domain IIB
1.004.050.001	d1gtpa_	2	22	Tetrahydrobiopterin biosynthesis enzymes
1.004.051.001	d1puc__	1	12	Cell cycle regulatory proteins
1.004.052.001	ds098__	0	1	beta-lactamase-inhibitor protein, BLIP
1.004.053.001	d1nef__	1	3	Regulatory factor Nef
1.004.054.001	d1cby__	1	1	Mosquitocidal delta-endotoxin CytB
1.004.055.001	d1srya2	4	23	Class-II-aaRS/Biotin Synthetases
1.004.056.001	d1vil__	2	5	Actin depolymerizing proteins
1.004.057.001	d1pne__	2	9	Profilin (actin-binding protein)
1.004.057.002	d2phy__	1	1	Photoactive yellow protein
1.004.058.001	d1mut__	1	1	Nucleoside triphosphate pyrophosphorylase (MutT)
1.004.059.001	d3tms__	1	34	Thymidylate synthase
1.004.060.001	d1lba__	1	1	Bacteriophage T7 lysozyme (Zn amidase)
1.004.061.001	d0lz6__	0	1	Streptomyces lysozyme
1.004.062.001	d1cyo__	1	7	Cytochrome b5
1.004.063.001	d1vcc__	3	3	A DNA topoisomerase I domain
1.004.064.001	ds086_2	0	1	DNA gyrase B, the N-terminal (ATPase) domain
1.004.065.001	ds101__	0	1	Ribonuclease Rh
1.004.066.001	d1orda3	1	2	Ornithine decarboxylase Ct-dom.
1.004.067.001	d1smna_	1	2	Endonuclease
1.004.068.001	d1mat__	2	3	Creatinase/methionine aminopeptidase
1.004.069.001	d1cdwa_	1	23	TATA-box binding protein-like
1.004.069.002	d3pmga4	1	6	Phosphoglucomutase, the Ct-dom.
1.004.070.001	d1mxa_1	3	24	S-adenosylmethionine synthetase. MAT
1.004.071.001	d2pola1	5	10	DNA clamp
1.004.072.001	d1alo_4	4	4	Aldehyde oxidoreductase, molybdemum cofactor-binding domain
1.004.073.001	d1hqi__	1	1	Phenol hydroxylase P2 protein
1.004.074.001	ds102__	0	1	ribosomal protein L6
1.004.075.001	d1div__	1	1	Ribosomal protein L9
1.004.076.001	d1gsa_2	5	12	Glutathione synthetase ATP-binding domain-like
1.004.077.001	d1mbb_1	1	4	FAD-binding domain
1.004.078.001	d1mbb_2	1	3	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, Ct-dom.
1.004.079.001	d3dni__	1	5	DNase I-like
1.004.080.001	d1aora2	1	2	Aldehyde ferredoxin oxidoreductase, Nt-dom.s
1.004.081.001	d1gdoa_	2	51	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1.004.082.001	d1pya.1	0	3	Histidine decarboxylase
1.004.083.001	d1bmc__	1	3	Zn metallo-beta-lactamase
1.004.084.001	d1fjma_	2	16	Metallo-dependent phosphatases
1.004.085.001	d1mlda2	3	43	like LDH/MDH, Ct-dom.
1.004.086.001	d1mrj__	1	22	Ribosome inactivating proteins (RIP)
1.004.087.001	d1dtp__	3	26	ADP-ribosylation
1.004.088.001	d1lit__	4	58	C-type lectin-like
1.004.089.001	d1pmd_3	1	1	Penicillin-binding protein 2x (pbp-2x), Nt-dom.
1.004.090.001	ds094_2	0	1	Substrate-binding domain of HMG-CoA reductase
1.004.091.001	ds109__	0	1	Sulfite reductase hemoprotein (SiRHP)
1.005.001.001	d1hcl__	2	23	Protein kinases (PK), catalytic core
1.005.002.001	d1psi__	1	17	Serpins
1.005.003.001	d3pte__	3	22	beta-Lactamase/D-ala carboxypeptidase
1.005.004.001	d2cae__	1	10	Heme-linked catalases
1.005.005.001	d1tpt__	1	1	Thymidine phosphorylase
1.005.006.001	d1buca2	1	6	Acyl-CoA dehydrogenase (flavoprotein), N-terminal and middle domains
1.005.007.001	d1imf__	3	72	Sugar phosphatases
1.005.008.001	d1mml__	2	32	DNA/RNA polymerases
1.005.009.001	d1rpl__	2	106	Nucleotidyltransferases
1.005.010.001	d1lgr__	1	14	Glutamine synthetase
1.005.011.001	d1ecl__	1	1	type I DNA topoisomerase
1.005.012.001	d1bgw__	1	1	type II DNA topoisomerase
1.005.013.001	d1daaa_	1	2	D-amino acid aminotransferase
1.005.014.001	d1frvb_	1	2	Nickel-iron hydrogenase, large subunit
1.005.015.001	d1frva_	1	2	Nickel-iron hydrogenase, small subunit
1.005.016.001	d1dkza_	1	4	like HSP70, Ct-dom.
1.005.017.001	d1jud__	1	1	L-2-Haloacid dehalogenase
1.005.018.001	ds114__	0	1	Luciferase
1.005.019.001	ds115__	0	1	Ribosomal protein L1
1.006.001.001	d1cola_	0	2	Colicin
1.006.001.002	d1ddt_3	0	6	Diphtheria toxin, middle domain
1.006.001.003	d1dlc_3	0	2	delta-Endotoxin (insectocide), Nt-dom.
1.006.001.004	ds125__	0	1	Bcl-2 inhibitors of programmed cell death
1.006.001.005	d0exa__	0	1	Exotoxin A, middle domain
1.006.002.001	d1htmb_	0	36	Influenza hemagglutinin (stalk)
1.006.002.002	ds126_1	0	1	MMLV envelope protein, transmembrane subunit fragment
1.006.003.001	d1vsga_	0	2	Variant surface glycoprotein (Nt-dom.)
1.006.004.001	d2brd__	0	11	Membrane all-alpha
1.006.005.001	ds127b_	0	2	Light-harvesting complex
1.006.006.001	d2omf__	0	13	Porins
1.006.007.001	d0lpc__	0	1	Lipovitellin-phosvitin complex
1.006.008.001	d1prea2	0	2	(Pro)aerolysin, the pore-forming lobe
1.006.009.001	d1svb_2	0	1	Envelope glycoprotein, central and dimerisation domains
1.007.001.001	d2gf1__	1	52	Insulin-like
1.007.002.001	d1etn__	1	4	Heat-stable enterotoxin B
1.007.003.001	d1hev__	2	50	Plant lectins/antimicrobial peptides
1.007.003.002	d1cti__	2	8	Plant inhibitors of proteinases
1.007.003.003	d1kal__	1	1	Kalata B1
1.007.003.004	d1gur__	1	1	Gurmarin, a sweet taste-suppressing polypeptide
1.007.003.005	d1omc__	4	11	omega-Conotoxin-like
1.007.003.006	d2sn3__	7	22	Scorpion toxin-like
1.007.003.007	d1cbh__	1	2	Cellulose-binding domain
1.007.003.008	d1lpba1	2	12	(Pro)colipase
1.007.003.009	d1bi6h1	1	4	Bromelain inhibitor VI (cysteine protease inhibitor)
1.007.003.010	d1pi2__	1	4	Bowman-Birk inhibitor
1.007.003.011	d1rel__	1	3	Elafin-like
1.007.004.001	d1pmc__	1	1	Proteinase inhibitor PMP-C
1.007.005.001	d3ebx__	4	48	Snake toxin-like
1.007.006.001	d1bpi__	2	36	BPTI-like
1.007.007.001	d1bnb__	4	11	Defensin-like
1.007.008.001	d1ans__	1	1	Neurotoxin III (ATX III)
1.007.009.001	d1ldl__	1	2	Ligand-binding domain of low-density lipoprotein receptor
1.007.010.001	d1ixa__	9	42	EGF/Laminin
1.007.011.001	d1cbn__	1	7	Crambin-like
1.007.012.001	d1krn__	1	24	Kringle modules
1.007.013.001	d1tur__	3	35	Ovomucoid/PCI-1 like inhibitors
1.007.014.001	d2pspa1	1	14	Trefoil
1.007.015.001	d1tgj__	5	22	Cystine-knot cytokines
1.007.016.001	d1hfi__	1	4	Complement control module
1.007.017.001	d1tcg__	1	5	mu-conotoxin
1.007.018.001	d1bgk__	2	2	Sea anemone toxin k
1.007.019.001	d2ech__	1	3	Blood coagulation inhibitor (disintegrin)
1.007.020.001	d1edn__	1	3	Endothelin-like
1.007.021.001	d2hir__	2	16	Thrombin inhibitors
1.007.022.001	d2bbkl_	1	8	Methylamine dehydrogenase, L-chain
1.007.023.001	d1pdc__	1	1	Fibronectin type II module
1.007.024.001	d1ata__	1	4	Ascaris trypsin inhibitor
1.007.025.001	d1exta1	3	13	Tumor necrosis factor (TNF) receptor
1.007.026.001	d1afp__	1	1	Antifungal protein (AGAFP)
1.007.027.001	d1cfi__	2	7	GLA-domain
1.007.028.001	d2cy3__	1	8	Cytochrome c3
1.007.029.001	d1hip__	3	12	HIPIP (high potential iron protein)
1.007.030.001	d1ard__	11	22	Classic zinc finger
1.007.031.001	d125d__	2	7	Zn2/Cys6 DNA-binding domain
1.007.032.001	d1hcp__	4	20	Glucocorticoid receptor-like (DNA-binding domain)
1.007.033.001	d2znf__	1	6	HIV zinc finger-like domains
1.007.034.001	d1mea__	1	2	Methionyl-tRNA synthetase (MetRS), Zn-domain
1.007.034.002	d1tfi__	2	2	A transcriptional factor domain
1.007.034.003	d7rxn__	1	12	Rubredoxin
1.007.034.004	d4at1b2	1	39	Aspartate carbamoyltransferase, Regulatory-chain, Ct-dom.
1.007.035.001	d1rie__	2	3	Membrane-bound rubredoxin-like
1.007.036.001	d1fre__	1	1	B-box zinc-binding domain
1.007.037.001	d1chc__	1	2	RING finger domain
1.007.038.001	d1mhu__	4	11	Metallothionein
1.007.039.001	d1adn__	1	1	Ada DNA repair protein, Nt-dom. (N-Ada 10)
1.007.040.001	d1ptq__	1	5	Protein kinase cystein-rich domain (cys2)
1.007.041.001	d1adt_2	2	12	ADDBP Zn-binding domains of ADDBP
1.007.042.001	d1tpm__	2	5	Fibronectin type I module
1.007.043.001	ds122__	0	2	<i>Amb </i> V allergen
1.008.001.001	d1gma__	0	7	Gramicidin
1.008.002.001	d1amt__	0	1	Alamecitin
1.008.003.001	d1bba__	0	3	Peptide hormones
1.008.004.001	d1xy2__	0	3	Deaminooxytocin
1.008.005.001	d2dtb__	0	2	delta-Toxin
1.008.006.001	d1gcn__	0	1	Glucagon
1.008.007.001	d1rpv__	0	1	HIV-1 REV fragment (residues 34-50)
1.008.008.001	d1bivb_	0	2	TAT pepdides
1.008.009.001	d1cfg__	0	2	Coagulation factor VIII, membrane-binding peptide
1.008.010.001	d1pei__	0	2	Phosphocholine cytidylyltransferase membrane-binding peptides
1.008.011.001	d1hph__	0	1	Parathyroid hormone fragment (residues 1-37)
1.008.012.001	ds123_1	0	1	Corticotropin releasing factor
1.008.013.001	d1lyp__	0	1	Liposaccharide-binding protein CAP18 (residues 106-137)
1.008.014.001	d1psm__	0	1	Polymorphic antigen SPAM-H1 (residues 90-127)
1.008.015.001	d2mlta_	0	2	Mellitin
1.008.016.001	d1ter__	0	1	Tertiapin
1.008.017.001	d1wfba_	0	4	Antifreeze polypeptide HPLC-6
1.008.018.001	d1paj__	0	8	Pilin fragments
1.008.019.001	d1rpc__	0	2	RP71935
1.008.020.001	d1anp__	0	1	Atrial natriuretic peptide
1.008.021.001	d1gna__	0	3	Heat-stable enterotoxin (HSE)
1.008.022.001	d1not__	0	1	G1 alpha-conotoxin
1.008.023.001	d1bdk__	0	1	Brandykinin antagonist B-9340
1.008.024.001	d1bct__	0	12	Transmembrane helical fragments
1.008.025.001	d1fct__	0	1	Ferredoxin chloroplastic transit peptide
1.008.026.001	d1vtp__	0	1	Vacuolar targeting peptide from NA-PROPI (residues 29-54)
1.008.027.001	d1plp__	0	1	Phospholamban, cytoplasmic domain residues 1-25
1.008.028.001	d1smfi_	0	1	Fragment of bowman-birk inhibitor
1.008.029.001	d1ale__	0	7	Fragments of apolipoproteins
1.008.030.001	d1tvs__	0	3	Transactivation protein TAT (TAT EIAVY)
1.008.031.001	d1sut__	0	1	The proline pipe
1.008.032.001	d1amb__	0	3	Alzheimer's disease amyloid beta-peptide
1.008.033.001	d1sol__	0	1	Gelsolin fragment (residues 150-169)
1.008.034.001	d1tor__	0	2	Acetylcholine receptor fragment (residues alpha 67-76)
1.008.035.001	d1fgd__	0	3	Thrombomodulin EGF domain fragment (residues 409-426)
1.008.036.001	d1mof__	0	1	MMLV p15 fragment (residues 409-426)
1.008.037.001	d4aahb_	0	2	Methanol dehydrogenase, light chain
1.008.038.001	d1gp2g_	0	2	Transducin (geterotrimeric G protein), gamma chain
1.009.001.001	d1cis__	0	1	Hybrid protein
1.009.002.001	d1al1__	0	1	Amphiphilic alpha helix
1.009.003.001	d1cos__	0	1	Alpha helical bundle
1.009.004.001	d1coi__	0	1	Alpha helical bundle
1.009.005.001	d1pef__	0	1	Peptide f (amphiphilic octadecapeptide)
1.010.001.001	d1atm__	0	121	Globular Proteins
1.010.001.002	d1cgd__	0	15	Repetative polypeptides
1.010.001.003	d1flx__	0	4	Protein Designs
1.010.001.004	d1tne__	0	17	Nucleic acids
1.010.002.001	d1anr__	0	359	Complexed with protein
1.010.002.002	d1dns__	0	382	Nucleic acid only
1.010.003.001	d1aga__	0	13	Non protein structures
1.010.004.001	d1xia__	0	4	Proteins of unknown sequence