id_ bestrep N_minsp N_scop objname 1.001.001 d1flp__ 8 340 Globin-like 1.001.002 d1hdj__ 4 33 Long alpha-hairpin 1.001.003 d1ctj__ 9 78 Cytochrome c 1.001.004 d1enh__ 18 76 DNA-binding 3-helical bundle 1.001.005 d1dtr_2 1 3 Diphtheria toxin repressor (DtxR) dimerization domain 1.001.006 d1tns__ 1 2 Mu transposase, DNA-binding domain 1.001.007 d2spca_ 1 2 Spectrin repeat unit 1.001.008 d1bdd__ 1 4 Immunoglobulin-binding protein A modules 1.001.009 d1bal__ 1 5 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 1.001.010 d2erl__ 3 5 Protozoan pheromone proteins 1.001.011 d2abd__ 1 2 Acyl-CoA binding protein 1.001.012 d0mts__ 0 1 Methionyl-tRNA synthetase, probable anticodon-binding domain 1.001.013 d2end__ 1 5 T4 endonuclease V 1.001.014 d1lis__ 1 3 Lysin 1.001.015 d1bmfg_ 1 3 F1-ATPase, gamma subunit 1.001.016 d1lbu_1 1 1 Zn2+ DD-carboxypeptidase, the Nt-dom. 1.001.017 d1hme__ 2 11 HMG-box 1.001.018 d1bfma_ 3 8 Histone-fold 1.001.019 d1mmog_ 1 2 Methane monooxygenase hydrolase, gamma subunit 1.001.020 d1nfn__ 8 57 Four-helical up-and-down bundle 1.001.021 d1fha__ 5 54 Ferritin-like 1.001.022 d1gnc__ 11 47 4-helical cytokines 1.001.023 d1acp__ 1 3 Acyl carrier protein-like 1.001.024 d1rpo__ 1 7 ROP protein 1.001.025 d1ytfb1 2 2 Transcription factor IIA (TFIIA), Nt-dom. 1.001.026 d1eci.1 0 1 Ectatomin, A & B chains 1.001.027 d1pou__ 6 44 lambda repressor-like DNA-binding domains 1.001.028 d2tct_1 2 3 TetR/NARL DNA-binding domain 1.001.029 d1coo__ 1 1 the Ct-dom. of RNA polymerase alpha subunit 1.001.030 d1mdya_ 1 5 Helix-loop-helix DNA-binding domain 1.001.031 d4icb__ 12 94 EF Hand-like 1.001.032 d1para_ 2 24 Met repressor-like 1.001.033 d1dsba1 1 2 Disulphide-bond formation facilitator (DSBA), insertion domain 1.001.034 d2gsta1 2 60 Glutathione S-transferases, Ct-dom. 1.001.035 d1bmta1 1 2 Methionine synthase domain 1.001.036 d1c5a__ 1 2 Anaphylotoxins (complement system) 1.001.037 d1occh_ 1 2 Cytochrome c oxidase subunit h 1.001.038 d1hyp__ 3 6 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 1.001.039 d1bno__ 0 93 DNA polymerase beta, N-terminal (8 kD)-domain 1.001.040 d1olga_ 1 48 p53 tetramerization domain 1.001.041 d1adt_1 1 6 A domain of early E2A DNA-binding protein, ADDBP 1.001.042 d1hnr__ 2 8 Prokaryotic DNA-bending protein 1.001.043 d1alo_1 1 1 Aldehyde oxidoreductase, domain 2 1.001.044 d1aep__ 1 1 Apolipophorin-III 1.001.045 d1axn__ 1 17 Annexin 1.001.046 d1tada1 1 14 Transducin (alpha subunit), insertion domain 1.001.047 d1trla_ 1 24 Thermolysin-like metalloproteases, Ct-dom. 1.001.048 d2ts1_1 1 8 Tyrosyl-tRNA synthetase, middle domain 1.001.049 d1bmfa1 2 18 Left-handed superhelix 1.001.050 d1gds__ 1 3 HIV-1 capsid protein, N-terminal core domain 1.001.051 d1tam__ 1 9 Retroviral matrix proteins 1.001.052 d1finb1 6 16 Cyclin-like 1.001.053 d1llp__ 3 62 Heme-dependent peroxidases 1.001.054 d2abk__ 1 2 DNA-glycosylase 1.001.055 d1gln_1 1 1 Anticodon-binding (C-terminal) domain of glutamyl-tRNA synthetase (GluRS) 1.001.056 d1rlr_1 1 1 R1 subunit of ribonucleotide reductase, Nt-dom. 1.001.057 d1dnpa1 1 2 FAD-binding (C-terminal) domain of DNA photolyase 1.001.058 d1lla_1 1 10 Hemocyanin, N-terminal and middle domains 1.001.059 d2pgd_1 1 6 6-phosphogluconate & Acyl-CoA dehydrogenases, Ct-dom. 1.001.060 d1utg__ 1 6 Uteroglobin-like 1.001.061 d1gai__ 3 8 Glycosyltransferases of the superhelical fold 1.001.062 d1csh__ 1 16 Citrate synthase 1.001.063 d1phc__ 2 31 Cytochrome P450 1.001.064 d1fiaa_ 1 8 FIS protein 1.001.065 d1prcc_ 1 1 Photosynthetic reaction centre (cytochrome subunit) 1.001.066 d3wrp__ 1 21 Trp repressor 1.001.067 d1aora1 1 2 Aldehyde ferredoxin oxidoreductase, Ct-dom.s 1.001.068 d1vnc__ 1 1 Vanadium-containing chloroperoxidase 1.001.069 d1bvp11 1 6 Bluetongue virus coat protein vp7 (BTV-10 vp7), alpha-helical domain 1.001.070 d1occe_ 2 6 alpha-alpha superhelix 1.001.071 d2sblb1 1 2 Lipoxigenase, Ct-dom. 1.001.072 d2tct_2 1 2 Tetracyclin repressor (Tet-repressor, TetR), Ct-dom. 1.001.073 d1lbd__ 1 3 Ligand-binding domain of nuclear receptor 1.001.074 ds028__ 0 2 Phospholipase C/P1 nuclease 1.001.075 ds029__ 0 1 Serum albumin 1.001.076 ds031__ 0 2 Class II fumarase/aspartase 1.001.077 d1fps__ 1 1 Isoprenyl diphosphate synthases 1.001.078 d1oela1 1 23 GroEL, the ATPase domain 1.001.079 d1ecma_ 2 5 Chorismate mutase II 1.001.080 d1poc__ 2 43 Phospholipase A2 1.001.081 d1zta__ 6 49 Oligomers of long helices 1.002.001 d1maj__ 48 899 Immunoglobulin-like beta-sandwich 1.002.002 d1exg__ 6 20 Common fold of diphtheria toxin/transcription factors/cytochrome f 1.002.003 d1kum__ 3 62 Prealbumin-like 1.002.004 d1hoe__ 1 4 alpha-Amylase inhibitor 1.002.005 d1aac__ 12 155 Cupredoxins 1.002.006 d1rsy__ 2 8 C2 domain-like 1.002.007 d1npoa_ 1 6 Neurophysin II 1.002.008 d2stv__ 17 195 Viral coat and capsid proteins 1.002.009 d1dsl__ 3 30 Crystallins/protein S/yeast killer toxin 1.002.010 d2sblb2 2 9 Colipase binding domain-like 1.002.011 d1pgs_1 2 6 Glycosyl-asparaginase 1.002.012 d1ecy__ 1 7 Ecotin, trypsin inhibitor 1.002.013 d1gof_2 3 23 Galactose-binding domain-like 1.002.014 d1ahsa_ 2 43 Segmented RNA-genome viruses' proteins 1.002.015 d1knb__ 1 1 Adenovirus type 5 fiber protein, knob domain 1.002.016 d1tnra_ 1 10 Tumor necrosis factor 1.002.017 d1thw__ 1 4 Thaumatin 1.002.018 d1jbc__ 8 151 ConA-like lectins/glucanases 1.002.019 d1bgla4 2 18 Supersandwich 1.002.020 d1nyf__ 10 61 SH3-like barrel 1.002.021 d1lepa_ 2 44 GroES-like 1.002.022 ds040_1 0 1 PDZ domain 1.002.023 d1whi__ 1 1 Ribosomal protein L14 1.002.024 d1snc__ 18 177 OB-fold 1.002.025 d1prch1 1 8 near-membrane domain of membrane proteins 1.002.026 d4fgf__ 7 56 beta-Trefoil 1.002.027 d1fnb_1 5 19 Reductase/Elongation Factor Domain 1.002.028 d1efua2 1 6 EF-Tu, Ct-dom. 1.002.029 d1arb__ 5 282 Trypsin-like serine proteases 1.002.030 d1bco_1 1 3 Mu transposase, Ct-dom. 1.002.031 d1bmfa2 3 20 like F1 ATP synthase, a & b sub., A-dom. 1.002.032 d1hvc__ 4 187 Acid proteases 1.002.033 d2eng__ 2 3 Barwin-like endoglucanases 1.002.034 d1gtra1 1 6 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain 1.002.035 d1mai__ 4 7 PH domain-like 1.002.036 d1ytfc1 2 2 Transcription factor IIA (TFIIA), Nt-dom. 1.002.037 ds049_1 0 1 Herpesvirus serine proteinase, assemblin 1.002.038 d1pkn_1 1 7 Pyruvate kinase beta-barrel domain 1.002.039 d1hbq__ 7 59 Lipocalins 1.002.040 d1stp__ 2 33 Streptavidin-like 1.002.041 d2cpl__ 1 39 Cyclophilin 1.002.042 d1hxn__ 2 5 4-bladed beta-propeller 1.002.043 d2sil__ 2 46 6-bladed beta-propeller 1.002.044 d2bbkh_ 3 14 7-bladed beta-propeller 1.002.045 d4aaha_ 1 3 8-bladed beta-propeller 1.002.046 d1cdg_3 6 28 alpha-Amylases, beta-sheet domain 1.002.047 d1hcb__ 1 97 Carbonic anhydrase 1.002.048 d3bcl__ 1 1 Bacteriochlorophyl A protein 1.002.049 d1vmoa_ 2 4 beta-Prism I 1.002.050 d1jpc__ 1 7 beta-Prism II 1.002.051 d1kapp1 1 5 beta-Roll 1.002.052 d2pec__ 2 5 Single-stranded right-handed beta-helix 1.002.053 d1lxa__ 1 4 Single-stranded left-handed beta-helix 1.002.054 d1caua_ 5 50 Double-stranded beta-helix 1.002.055 d1bdo__ 7 19 Barrel-sandwich hybrid 1.002.056 d1dud__ 3 11 beta-clip 1.002.057 d2kauc1 1 5 alpha-Subunit of urease, composite domain 1.003.001 d1byb__ 37 399 TIM-barrel 1.003.002 d1tml__ 1 4 Cellulases 1.003.003 d1rlr_2 1 1 ribonucleotide reductase, R1 sub., Ct-dom. 1.003.004 d2tmda2 13 132 FAD/NAD(P)-binding 1.003.005 d1zyma_ 4 35 The "swivelling" beta/beta/alpha domain 1.003.006 d1bta__ 1 8 Barstar (barnase inhibitor) 1.003.007 d1bnh__ 1 2 Leucine-rich repeats 1.003.008 ds062__ 0 2 Crotonase-like 1.003.009 d1rvva_ 1 30 beta-subunit (capsid) of the lumazine synthase/riboflavin synthase complex 1.003.010 d1ice.1 0 1 Interleukin-1beta converting enzyme (a cysteine protease) 1.003.011 d1udh__ 1 5 Uracil-DNA glycosylase 1.003.012 d1mla_1 1 1 Catalytic domain of malonyl-CoA ACP transacylase 1.003.013 d3chy__ 15 100 Flavodoxin-like 1.003.014 d1fnb_2 3 10 Ferredoxin reductase-like, C-terminal NADP-linked domain 1.003.015 d2ts1_2 3 22 ATP pyrophoshatases 1.003.016 d1dnpa2 1 2 Nt-dom. of DNA photolyase 1.003.017 d2tmda3 2 10 A nucleotide-binding domain 1.003.018 d1xel__ 16 183 NAD(P)-binding Rossmann Fold 1.003.019 d1bnca2 3 9 Biotin carboxylase Nt-dom.-like 1.003.020 d1pyda1 2 8 Pyruvate oxidase and decarboxylase, middle domain 1.003.021 d1nbaa_ 1 4 N-carbamoylsarcosine amidohydrolase 1.003.022 d1deaa_ 1 6 Glucosamine 6-phosphate deaminase 1.003.023 d1pyda2 5 36 Thiamin-binding 1.003.024 d1gky__ 13 132 P-loop Containing NTP Hydrolases 1.003.025 d1chd__ 1 1 CheB methylesterase domain (C-terminal residues 152-349) 1.003.026 d1sca__ 1 45 Subtilases 1.003.027 d3cla__ 2 15 CoA-dependent acetyltransferases 1.003.028 d1phr__ 1 3 Phosphotyrosine protein phosphatases I 1.003.029 d2hnq__ 3 12 (Phosphotyrosine) protein phosphatases II 1.003.030 d1srx__ 7 83 Thioredoxin-like 1.003.031 d1trka3 1 10 Transketolase, Ct-dom. 1.003.032 d1pkm_3 1 7 Pyruvate kinase, Ct-dom. 1.003.033 d1lcpa1 1 8 Leucine aminopeptidase, Nt-dom. 1.003.034 d1htta1 1 5 An anticodon-binding domain of Class II aaRS 1.003.035 d1bam__ 5 22 Restriction endonucleases 1.003.036 d1gdr__ 1 6 gamma,delta resolvase, large fragment 1.003.037 d1pdo__ 1 1 The IIA domain of mannose transporter, IIA-Man 1.003.038 d2rn2__ 19 112 Ribonuclease H-like motif 1.003.039 d1tfr__ 2 3 5' to 3' exonuclease 1.003.040 d3pgm__ 2 4 Phosphoglycerate mutase-like 1.003.041 d1opr__ 3 16 Phosphoribosyltransferases (PRTases) 1.003.042 d1zon__ 1 9 Integrin A (or I) domain 1.003.043 d1cde__ 1 7 Glycinamide ribonucleotide transformylase 1.003.044 d1vid__ 5 16 SAM-dependent methyltransferases 1.003.045 d1ama__ 4 79 PLP-dependent transferases 1.003.046 d1gpma2 1 4 Class I glutamine amidotransferases 1.003.047 d1ulb__ 2 10 Purine and uridine phosphorylases 1.003.048 d2ace__ 9 71 alpha/beta-Hydrolases 1.003.049 d1masa_ 1 2 Purine nucleoside hydrolase 1.003.050 d2ctb__ 3 27 Zn-dependent exopeptidases 1.003.051 d1ra9__ 1 67 Dihydrofolate reductases 1.003.052 d1gtma2 1 6 Aminoacid dehydrogenases, dimerisation domain 1.003.053 d1fua__ 1 4 Class II aldolase 1.003.054 d1alka_ 1 28 Alkaline phosphatase 1.003.055 d1xaa__ 1 29 Isocitrate/isopropylmalate dehydrogenases 1.003.056 d2at2a_ 3 105 Asp-carbamoyltransferase, Cat.-chain 1.003.057 d1ttqb_ 1 4 Tryptophan synthase, beta-subunit 1.003.058 d2ora_1 2 6 Rhodanese 1.003.059 d7acn_2 1 10 Aconitase, first 3 domains 1.003.060 d3pmga1 3 18 Phosphoglucomutase, first 3 domains 1.003.061 d3pgk__ 1 4 Phosphoglycerate kinase 1.003.062 d1mioa_ 2 8 Nitrogenase iron-molybdenum protein, alpha and beta chains 1.003.063 d2bgu__ 2 45 beta-Glucosyltransferase & glycogen phosphorylase 1.003.064 d1agx__ 1 9 Glutaminase/Asparaginase 1.003.065 d3pfk__ 1 12 Phosphofructokinase 1.003.066 d1ayl__ 1 2 Phosphoenolpyruvate carboxykinase (ATP-oxaloacetate carboxy-liase) 1.003.067 d2dri__ 3 40 Periplasmic binding protein-like I 1.003.068 d1lst__ 8 60 Periplasmic binding protein-like II 1.003.069 d1pxta1 2 4 Thiolase 1.003.070 d1ctt_1 2 4 Cytidine deaminase 1.004.001 d1fus__ 3 124 Microbal ribonucleases 1.004.002 d2baa__ 6 395 Lysozyme-like 1.004.003 d2act__ 3 38 Cysteine proteinases 1.004.004 d7rsa__ 2 77 Ribonuclease A-like 1.004.005 d2kaua_ 1 5 Urease, gamma-subunit 1.004.006 d3il8__ 2 54 Interleukin 8-like chemokines 1.004.007 d1pmd_1 2 2 Penicillin-binding protein 2x (pbp-2x), c-terminal domain 1.004.008 d1sso__ 1 2 "histone-like" proteins from arhaea 1.004.009 d1kpaa_ 3 12 HIT-like 1.004.010 d1dar_3 2 5 Ribosomal protein S5 domain 2-like 1.004.011 d1igd__ 11 48 beta-Grasp 1.004.012 d3cox_2 5 33 FAD-linked reductases, Ct-dom. 1.004.013 d1dvc__ 7 19 Cystatin-like 1.004.014 d1tmca_ 1 35 MHC antigen-recognition domain 1.004.015 d1aak__ 1 2 Ubiquitin conjugating enzyme 1.004.016 d1ema__ 1 3 Green fluorescent protein 1.004.017 ds088__ 0 1 Pilin 1.004.018 d1fkd__ 3 23 FKBP-like 1.004.019 d1dhy_1 2 5 Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 1.004.020 d1mkaa_ 1 4 beta-Hydroxydecanol thiol ester dehydrase 1.004.021 d1egl__ 1 23 CI-2 family of serine protease inhibitors 1.004.022 d1tfe__ 2 5 Elongation factor Ts (EF-Ts), dimerisation domain 1.004.023 d1mnga2 1 22 Fe,Mn superoxide dismutase (SOD), Ct-dom. 1.004.024 d1ctf__ 1 1 Ribosomal protein L7/12, Ct-dom. 1.004.025 d2reb_2 1 3 Anti-LPS factor/recA domain 1.004.026 d1stu__ 3 4 dsRBD & PDA domains 1.004.027 d1vih__ 1 2 KH-domain 1.004.028 d1gpma3 1 4 GMP synthetase, the C-terminal, dimerisation domain 1.004.029 d1onea2 3 26 like Enolase, Nt-dom. 1.004.030 d1oela3 1 22 The intermediate domain of GroEL 1.004.031 d1fxd__ 23 160 like Ferrodoxin 1.004.032 d1vhh__ 2 2 Hedgehog/DD-peptidase 1.004.033 d1tig__ 2 3 IF3-like 1.004.034 d1kpta_ 1 2 Virally encoded KP4 toxin 1.004.035 d3rubs_ 1 19 RuBisCO, small subunit 1.004.036 d1dcoa_ 2 42 DCoH-like 1.004.037 d2chsa_ 1 36 Chorismate mutase 1.004.038 d1fim__ 3 13 Tautomerase/MIF 1.004.039 d1gado2 3 42 like G3P dehydrogenase, Ct-dom 1.004.040 d1oaca4 1 2 Copper amine oxidase, domain 1 1.004.041 d3ssi__ 1 5 Subtilisin inhibitor 1.004.042 d1msc__ 2 18 RNA bacteriophage capsid protein 1.004.043 d3grs_3 4 50 FAD/NAD-linked reductases, dimer-dom. 1.004.044 d1srsa_ 1 2 Serum response factor (SRF) core 1.004.045 ds097__ 0 2 NADH oxidase/flavine reductase 1.004.046 d1ast__ 6 65 Metzincin-like 1.004.047 d1ayd__ 2 35 SH2-like 1.004.048 d2hpr__ 1 11 Histidine-containing phosphocarrier proteins (HPr) 1.004.049 d1iba__ 1 1 Glucose permease domain IIB 1.004.050 d1gtpa_ 2 22 Tetrahydrobiopterin biosynthesis enzymes 1.004.051 d1puc__ 1 12 Cell cycle regulatory proteins 1.004.052 ds098__ 0 1 beta-lactamase-inhibitor protein, BLIP 1.004.053 d1nef__ 1 3 Regulatory factor Nef 1.004.054 d1cby__ 1 1 Mosquitocidal delta-endotoxin CytB 1.004.055 d1srya2 4 23 Class-II-aaRS/Biotin Synthetases 1.004.056 d1vil__ 2 5 Actin depolymerizing proteins 1.004.057 d1pne__ 3 10 Profilin-like 1.004.058 d1mut__ 1 1 Nucleoside triphosphate pyrophosphorylase (MutT) 1.004.059 d3tms__ 1 34 Thymidylate synthase 1.004.060 d1lba__ 1 1 Bacteriophage T7 lysozyme (Zn amidase) 1.004.061 d0lz6__ 0 1 Streptomyces lysozyme 1.004.062 d1cyo__ 1 7 Cytochrome b5 1.004.063 d1vcc__ 3 3 A DNA topoisomerase I domain 1.004.064 ds086_2 0 1 DNA gyrase B, the N-terminal (ATPase) domain 1.004.065 ds101__ 0 1 Ribonuclease Rh 1.004.066 d1orda3 1 2 Ornithine decarboxylase Ct-dom. 1.004.067 d1smna_ 1 2 Endonuclease 1.004.068 d1mat__ 2 3 Creatinase/methionine aminopeptidase 1.004.069 d1cdwa_ 2 29 TBP-like 1.004.070 d1mxa_1 3 24 S-adenosylmethionine synthetase. MAT 1.004.071 d2pola1 5 10 DNA clamp 1.004.072 d1alo_4 4 4 Aldehyde oxidoreductase, molybdemum cofactor-binding domain 1.004.073 d1hqi__ 1 1 Phenol hydroxylase P2 protein 1.004.074 ds102__ 0 1 ribosomal protein L6 1.004.075 d1div__ 1 1 Ribosomal protein L9 1.004.076 d1gsa_2 5 12 ATP-grasp 1.004.077 d1mbb_1 1 4 FAD-binding domain 1.004.078 d1mbb_2 1 3 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, Ct-dom. 1.004.079 d3dni__ 1 5 DNase I-like 1.004.080 d1aora2 1 2 Aldehyde ferredoxin oxidoreductase, Nt-dom.s 1.004.081 d1gdoa_ 2 51 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1.004.082 d1pya.1 0 3 Histidine decarboxylase 1.004.083 d1bmc__ 1 3 Zn metallo-beta-lactamase 1.004.084 d1fjma_ 2 16 Metallo-dependent phosphatases 1.004.085 d1mlda2 3 43 like LDH/MDH, Ct-dom. 1.004.086 d1mrj__ 1 22 Ribosome inactivating proteins (RIP) 1.004.087 d1dtp__ 3 26 ADP-ribosylation 1.004.088 d1lit__ 4 58 C-type lectin-like 1.004.089 d1pmd_3 1 1 Penicillin-binding protein 2x (pbp-2x), Nt-dom. 1.004.090 ds094_2 0 1 Substrate-binding domain of HMG-CoA reductase 1.004.091 ds109__ 0 1 Sulfite reductase hemoprotein (SiRHP) 1.005.001 d1hcl__ 2 23 Protein kinases (PK), catalytic core 1.005.002 d1psi__ 1 17 Serpins 1.005.003 d3pte__ 3 22 beta-Lactamase/D-ala carboxypeptidase 1.005.004 d2cae__ 1 10 Heme-linked catalases 1.005.005 d1tpt__ 1 1 Thymidine phosphorylase 1.005.006 d1buca2 1 6 Acyl-CoA dehydrogenase (flavoprotein), N-terminal and middle domains 1.005.007 d1imf__ 3 72 Sugar phosphatases 1.005.008 d1mml__ 2 32 DNA/RNA polymerases 1.005.009 d1rpl__ 2 106 Nucleotidyltransferases 1.005.010 d1lgr__ 1 14 Glutamine synthetase 1.005.011 d1ecl__ 1 1 type I DNA topoisomerase 1.005.012 d1bgw__ 1 1 type II DNA topoisomerase 1.005.013 d1daaa_ 1 2 D-amino acid aminotransferase 1.005.014 d1frvb_ 1 2 Nickel-iron hydrogenase, large subunit 1.005.015 d1frva_ 1 2 Nickel-iron hydrogenase, small subunit 1.005.016 d1dkza_ 1 4 like HSP70, Ct-dom. 1.005.017 d1jud__ 1 1 L-2-Haloacid dehalogenase 1.005.018 ds114__ 0 1 Luciferase 1.005.019 ds115__ 0 1 Ribosomal protein L1 1.006.001 d1cola_ 0 12 Toxins' membrane translocation domains 1.006.002 d1htmb_ 0 37 stalk segment of viral fusion proteins 1.006.003 d1vsga_ 0 2 Variant surface glycoprotein (Nt-dom.) 1.006.004 d2brd__ 0 11 Membrane all-alpha 1.006.005 ds127b_ 0 2 Light-harvesting complex 1.006.006 d2omf__ 0 13 Porins 1.006.007 d0lpc__ 0 1 Lipovitellin-phosvitin complex 1.006.008 d1prea2 0 2 (Pro)aerolysin, the pore-forming lobe 1.006.009 d1svb_2 0 1 Envelope glycoprotein, central and dimerisation domains 1.007.001 d2gf1__ 1 52 Insulin-like 1.007.002 d1etn__ 1 4 Heat-stable enterotoxin B 1.007.003 d1hev__ 23 118 Knottins (Small inhibitors, toxins, lectins) 1.007.004 d1pmc__ 1 1 Proteinase inhibitor PMP-C 1.007.005 d3ebx__ 4 48 Snake toxin-like 1.007.006 d1bpi__ 2 36 BPTI-like 1.007.007 d1bnb__ 4 11 Defensin-like 1.007.008 d1ans__ 1 1 Neurotoxin III (ATX III) 1.007.009 d1ldl__ 1 2 Ligand-binding domain of low-density lipoprotein receptor 1.007.010 d1ixa__ 9 42 EGF/Laminin 1.007.011 d1cbn__ 1 7 Crambin-like 1.007.012 d1krn__ 1 24 Kringle modules 1.007.013 d1tur__ 3 35 Ovomucoid/PCI-1 like inhibitors 1.007.014 d2pspa1 1 14 Trefoil 1.007.015 d1tgj__ 5 22 Cystine-knot cytokines 1.007.016 d1hfi__ 1 4 Complement control module 1.007.017 d1tcg__ 1 5 mu-conotoxin 1.007.018 d1bgk__ 2 2 Sea anemone toxin k 1.007.019 d2ech__ 1 3 Blood coagulation inhibitor (disintegrin) 1.007.020 d1edn__ 1 3 Endothelin-like 1.007.021 d2hir__ 2 16 Thrombin inhibitors 1.007.022 d2bbkl_ 1 8 Methylamine dehydrogenase, L-chain 1.007.023 d1pdc__ 1 1 Fibronectin type II module 1.007.024 d1ata__ 1 4 Ascaris trypsin inhibitor 1.007.025 d1exta1 3 13 Tumor necrosis factor (TNF) receptor 1.007.026 d1afp__ 1 1 Antifungal protein (AGAFP) 1.007.027 d1cfi__ 2 7 GLA-domain 1.007.028 d2cy3__ 1 8 Cytochrome c3 1.007.029 d1hip__ 3 12 HIPIP (high potential iron protein) 1.007.030 d1ard__ 11 22 Classic zinc finger 1.007.031 d125d__ 2 7 Zn2/Cys6 DNA-binding domain 1.007.032 d1hcp__ 4 20 Glucocorticoid receptor-like (DNA-binding domain) 1.007.033 d2znf__ 1 6 HIV zinc finger-like domains 1.007.034 d1mea__ 5 55 Rubredoxin-like 1.007.035 d1rie__ 2 3 Membrane-bound rubredoxin-like 1.007.036 d1fre__ 1 1 B-box zinc-binding domain 1.007.037 d1chc__ 1 2 RING finger domain 1.007.038 d1mhu__ 4 11 Metallothionein 1.007.039 d1adn__ 1 1 Ada DNA repair protein, Nt-dom. (N-Ada 10) 1.007.040 d1ptq__ 1 5 Protein kinase cystein-rich domain (cys2) 1.007.041 d1adt_2 2 12 ADDBP Zn-binding domains of ADDBP 1.007.042 d1tpm__ 2 5 Fibronectin type I module 1.007.043 ds122__ 0 2 Amb V allergen 1.008.001 d1gma__ 0 7 Gramicidin 1.008.002 d1amt__ 0 1 Alamecitin 1.008.003 d1bba__ 0 3 Peptide hormones 1.008.004 d1xy2__ 0 3 Deaminooxytocin 1.008.005 d2dtb__ 0 2 delta-Toxin 1.008.006 d1gcn__ 0 1 Glucagon 1.008.007 d1rpv__ 0 1 HIV-1 REV fragment (residues 34-50) 1.008.008 d1bivb_ 0 2 TAT pepdides 1.008.009 d1cfg__ 0 2 Coagulation factor VIII, membrane-binding peptide 1.008.010 d1pei__ 0 2 Phosphocholine cytidylyltransferase membrane-binding peptides 1.008.011 d1hph__ 0 1 Parathyroid hormone fragment (residues 1-37) 1.008.012 ds123_1 0 1 Corticotropin releasing factor 1.008.013 d1lyp__ 0 1 Liposaccharide-binding protein CAP18 (residues 106-137) 1.008.014 d1psm__ 0 1 Polymorphic antigen SPAM-H1 (residues 90-127) 1.008.015 d2mlta_ 0 2 Mellitin 1.008.016 d1ter__ 0 1 Tertiapin 1.008.017 d1wfba_ 0 4 Antifreeze polypeptide HPLC-6 1.008.018 d1paj__ 0 8 Pilin fragments 1.008.019 d1rpc__ 0 2 RP71935 1.008.020 d1anp__ 0 1 Atrial natriuretic peptide 1.008.021 d1gna__ 0 3 Heat-stable enterotoxin (HSE) 1.008.022 d1not__ 0 1 G1 alpha-conotoxin 1.008.023 d1bdk__ 0 1 Brandykinin antagonist B-9340 1.008.024 d1bct__ 0 12 Transmembrane helical fragments 1.008.025 d1fct__ 0 1 Ferredoxin chloroplastic transit peptide 1.008.026 d1vtp__ 0 1 Vacuolar targeting peptide from NA-PROPI (residues 29-54) 1.008.027 d1plp__ 0 1 Phospholamban, cytoplasmic domain residues 1-25 1.008.028 d1smfi_ 0 1 Fragment of bowman-birk inhibitor 1.008.029 d1ale__ 0 7 Fragments of apolipoproteins 1.008.030 d1tvs__ 0 3 Transactivation protein TAT (TAT EIAVY) 1.008.031 d1sut__ 0 1 The proline pipe 1.008.032 d1amb__ 0 3 Alzheimer's disease amyloid beta-peptide 1.008.033 d1sol__ 0 1 Gelsolin fragment (residues 150-169) 1.008.034 d1tor__ 0 2 Acetylcholine receptor fragment (residues alpha 67-76) 1.008.035 d1fgd__ 0 3 Thrombomodulin EGF domain fragment (residues 409-426) 1.008.036 d1mof__ 0 1 MMLV p15 fragment (residues 409-426) 1.008.037 d4aahb_ 0 2 Methanol dehydrogenase, light chain 1.008.038 d1gp2g_ 0 2 Transducin (geterotrimeric G protein), gamma chain 1.009.001 d1cis__ 0 1 Hybrid protein 1.009.002 d1al1__ 0 1 Amphiphilic alpha helix 1.009.003 d1cos__ 0 1 Alpha helical bundle 1.009.004 d1coi__ 0 1 Alpha helical bundle 1.009.005 d1pef__ 0 1 Peptide f (amphiphilic octadecapeptide) 1.010.001 d1atm__ 0 157 Theoretical Models 1.010.002 d1anr__ 0 741 Nucleic acids 1.010.003 d1aga__ 0 13 Non-protein structures 1.010.004 d1xia__ 0 4 Proteins of unknown sequence