### Table genome_v_minscop ### ~~~~~ ### .........................................................................., ##_ key 0 did_ ##_ key 1 gid_ ##_ key 2 TargStart_I ##_ value 3 TargStop_n ##_ value 4 QryStart_n ##_ value 5 QryStop_n ##_ value 6 ev_f ##_ value 7 swsc_n ##_ value 8 swid_f ##_ value 9 comment ### .........................................................................., This is custom made up file based on the values in the table sat_mg_strucs_nov98.txt. It was constructed by MBG on 981127. It has all the original fields, plus a comment. The original matches are from the web page at the MRC LMB. The beginning of this page is reproduced below. 1998.12.14: d1dts__ MG080 707 847 5 173 2.00E-07 _ _ (mbg fixed) -- SCOP Domain Sequences in the MG Genome (Additional information for "Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements" (1998) by Sarah A. Teichmann, Jong Park and Cyrus Chothia, Proc. Natl. Acad. Sci. USA, 95, 14658-14663) Explanation of format: (MG sequence number)-(sequence length) (MG sequence region) (scop sequence name)-(sequence length) (sequence region) (expectation value with which found) If there is an M at the end of the line, the relationship was only found starting the search from the MG sequence. If the information 'via sequence name' is given, the relationship is not found with PSI-BLAST, but only via another sequence in the GEANFAMMER sequence family of that sequence. If there is a * at the end of the line, the expectation value is below that considered significant, but the match is accepted for other reasons. MG001-267 149-266 pdb_d2pola3-122 4-119 8e-25 MG002-310 3-64 pdb_d1xbl__-75 4-68 5e-16 MG002-310 122-211 pdb_d1tbd__-134 7-91 5e-7 MG003-650 412-640 pdb_d1bgw__-680 1-243 4e-79 MG003-650 229-410 pdb_ds043_1-172 1-172 4e-54 MG003-650 96-215 pdb_d1ah6__-213 89-212 8e-20 MG004-836 24-498 pdb_d1bgw__-680 206-677 1e-128 MG005-417 5-110 pdb_d1seta1-110 4-110 4e-25 MG005-417 114-413 pdb_d1seta2-311 3-303 1e-109 ### ........................................................................... ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 03:13:12 EST 1998 ### with pid 11159 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 04:36:46 EST 1998 ### with pid 11687 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 04:42:36 EST 1998 ### with pid 11833 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 04:48:25 EST 1998 ### with pid 11979 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 04:54:11 EST 1998 ### with pid 12125 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 04:59:59 EST 1998 ### with pid 12346 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:05:48 EST 1998 ### with pid 12494 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:11:36 EST 1998 ### with pid 12642 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:17:22 EST 1998 ### with pid 12790 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:23:08 EST 1998 ### with pid 12938 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:28:57 EST 1998 ### with pid 13084 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:34:42 EST 1998 ### with pid 13232 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:40:29 EST 1998 ### with pid 13380 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:46:18 EST 1998 ### with pid 13528 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:52:09 EST 1998 ### with pid 13676 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 05:57:58 EST 1998 ### with pid 13897 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:03:47 EST 1998 ### with pid 14045 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:09:39 EST 1998 ### with pid 14193 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:15:25 EST 1998 ### with pid 14341 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:21:14 EST 1998 ### with pid 14489 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:26:59 EST 1998 ### with pid 14635 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:32:47 EST 1998 ### with pid 14783 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:38:32 EST 1998 ### with pid 14931 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:44:24 EST 1998 ### with pid 15079 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:50:14 EST 1998 ### with pid 15227 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 06:56:04 EST 1998 ### with pid 15454 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Sun Nov 29 07:01:55 EST 1998 ### with pid 15600 on oin. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 01:50:53 EST 1998 ### with pid 3777 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 01:51:51 EST 1998 ### with pid 3810 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 01:53:43 EST 1998 ### with pid 3844 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 01:54:31 EST 1998 ### with pid 3877 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 01:55:30 EST 1998 ### with pid 3910 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 01:56:19 EST 1998 ### with pid 3944 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 01:58:00 EST 1998 ### with pid 4001 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 02:00:26 EST 1998 ### with pid 4065 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 02:01:51 EST 1998 ### with pid 4161 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 02:03:01 EST 1998 ### with pid 4224 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 02:08:28 EST 1998 ### with pid 4287 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 02:11:43 EST 1998 ### with pid 4354 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_nov98 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 02:14:50 EST 1998 ### with pid 4443 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_sat9811 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 02:33:25 EST 1998 ### with pid 4697 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_sat9811 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Mon Dec 14 02:38:50 EST 1998 ### with pid 4783 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_sat9811 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Tue Dec 15 05:29:57 EST 1998 ### with pid 6805 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_sat9811 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Tue Dec 15 05:31:53 EST 1998 ### with pid 6879 on vt.csb.yale.edu. ### .........................................................................., ### .........................................................................., ### Table genome_v_minscop_sat9811 ### ~~~~~ ### is being read by script good-scop-matches-to-mask-w-yr.pl, ### which is being interpreted by perl at Tue Dec 15 05:33:28 EST 1998 ### with pid 6977 on vt.csb.yale.edu. ### ..........................................................................,