#MAKE SURE YOU EDIT THE FILE IN UNIX... WINDOWS PUTS WRONG CHARACTERS 8-orf-0030 Sequence Similarity of Dimethyladenosine transferase (rRNA methylation) Mgen Mpne Syne Hpyl Ecol Hinf Mjan Scer END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0072 Sequence Similarity of Phenylalanyl-tRNA synthetase beta subunit Hpyl Syne Hinf Ecol Mgen Mpne Mjan Scer END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0089 Sequence Similarity of Ribosomal protein L23 Syne Hpyl Mgen Mpne Mjan Scer Ecol Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0092 Sequence Similarity of Ribosomal protein S3 Syne Mgen Mpne Mjan Scer Hpyl Ecol Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0125 Sequence Similarity of Thymidylate kinase Scer Mgen Mpne Ecol Hinf Hpyl Mjan Syne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0149 Sequence Similarity of Triosephosphate isomerase Mjan Mgen Mpne Hpyl Scer Syne Ecol Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0126 Sequence Similarity of 3-phosphoglycerate kinase Hpyl Mjan Mgen Mpne Ecol Hinf Syne Scer END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0166 Sequence Similarity of Glucose-6-phosphate isomerase Syne Hpyl Scer Ecol Hinf Mjan Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0200 Sequence Similarity of Ribosomal protein L15 Hpyl Mgen Mpne Syne Ecol Hinf Scer Mjan END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0250 Sequence Similarity of Transcription antiterminator NusG/RfaH Hpyl Syne Mjan Scer Mgen Mpne Ecol Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0256 Sequence Similarity of Ribosomal protein L18 Mgen Mpne Mjan Scer Ecol Hinf Syne Hpyl END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0525 Sequence Similarity of Valyl-tRNA synthetase Hpyl Mjan Mgen Mpne Scer Syne Ecol Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-orf-0552 Sequence Similarity of Signal recognition particle GTPase FtsY Hpyl Syne Mgen Mpne Ecol Hinf Mjan Scer END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-cog-c Occurrence of COGs involved in Energy production and conversion Mpne Mgen Mjan Scer Hinf Hpyl Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro Dmel END 8-cog-e Occurrence of COGs involved in Amino acid transport and metabolism Mpne Mgen Hpyl Mjan Hinf Scer Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-f Occurrence of COGs involved in Nucleotide transport and metabolism Mpne Mgen Hpyl Mjan Scer Hinf Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-g Occurrence of COGs involved in Carbohydrate transport and metabolism Mpne Mgen Mjan Hpyl Hinf Scer Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-h Occurrence of COGs involved in Coenzyme metabolism Mpne Mgen Mjan Hinf Scer Hpyl Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-i Occurrence of COGs involved in Lipid metabolism Mpne Mgen Mjan Hinf Scer Hpyl Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-j Occurrence of COGs involved in Translation, ribosomal structure and biogenesis Mjan Scer Mpne Mgen Hpyl Syne Hinf Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-k Occurrence of COGs involved in Transcription Mjan Scer Syne Hinf Ecol Hpyl Mpne Mgen END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-l Occurrence of COGs involved in DNA replication, recombination and repair Mjan Scer Mpne Mgen Syne Ecol Hpyl Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-m Occurrence of COGs involved in Cell envelope biogenesis, outer membrane Mpne Mgen Scer Mjan Hinf Hpyl Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-n Occurrence of COGs involved in Cell motility and secretion Scer Mpne Mgen Mjan Hpyl Hinf Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-o Occurrence of COGs involved in Posttranslational modification, protein turnover, chaperones Mjan Mpne Mgen Hpyl Syne Scer Hinf Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-p Occurrence of COGs involved in Inorganic ion transport and metabolism Mpne Mgen Scer Mjan Syne Ecol Hpyl Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-r Occurrence of COGs whose general function is a prediction only Mpne Mgen Mjan Scer Syne Ecol Hpyl Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-aa-freq Absolute Amino Acid Count in 8 Genmoes Ecol Scer Syne Hinf Hpyl Mjan Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-aa-per Amino Acid Percentages for 8 Genomes Ecol Syne Hinf Scer Hpyl Mjan Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-dint-freq Absolute Dinucleotide Count for 8 Genomes Ecol Scer Syne Hinf Mjan Hpyl Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-dint-per Dinucleotide Composition for 8 Genomes Ecol Syne Mpne Scer Hinf Hpyl Mgen Mjan END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-dint-freq Absolute Dinucleotide Count for 8 Genomes Ecol Scer Syne Hinf Mjan Hpyl Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-ribo-ssu Small Subunit Ribosomal RNA for 8 Genomes Scer Mjan Mpne Mgen Syne Hpyl Hinf Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-sfam-dist Superfamily Occurrnece with Distance Method for 8 Genomes Mjan Hpyl Scer Syne Ecol Hinf Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-sfam-pars Superfamily Occurrence with Parsimony Method for 8 Genomes Mjan Hpyl Scer Syne Ecol Hinf Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-fold-pars-2 Fold Occurrence with Parsimony Method for 8 Genomes Mjan Mpyl Scer Syne Ecol Hinf Mpne Mgen END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-fold-dist Fold Occurrence with Distance Method for 8 Genomes Syne Scer Hinf Ecol Hpyl Mjan Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-fold-pars Fold Occurrence with Parsimony Method for 8 Genomes Syne Scer Hinf Ecol Hpyl Mjan Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-dint-per Dinucleotide Percentages for 8 Genomes Ecol Syne Mpne Scer Hinf Hpyl Mgen Mjan END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 20-dint-per Dinucleotide Percentages for 20 Genomes Aaeo Phor Bsub Syne Aful Mthe Ecol Mtub Tpal Mpne Scer Hpyl Hinf Cele Mgen Mjan Bbur Rpro Cpne Ctra END Dmel END 20-dint-freq Absolute Dinucleotide Totals for 20 Genomes Aaeo Phor Mthe Aful Syne Mtub Bsub Ecol Cele Scer Hinf Hpyl Bbur Mjan Rpro Cpne Tpal Ctra Mgen Mpne END Dmel END 20-aa-per Amino Acid Percentages for 20 Genomes Aaeo Mjan Phor Aful Mthe Syne Ecol Mtub Tpal Cpne Ctra Bsub Hinf Cele Scer Mpne Hpyl Mgen Bbur Rpro END Dmel END 20-aa-freq Absolute Amino Acid Totals for 20 Genomes Aaeo Mjan Hinf Mthe Phor Aful Syne Bsub Ecol Mtub Cele Scer Hpyl Bbur Tpal Cpne Ctra Rpro Mgen Mpne END Dmel END 20-fold-pars Fold Occurrence with Parsimony Method for 20 Genomes Ctra Cpne Rpro Hpyl Aaeo Syne Bsub Hinf Ecol Mtub Scer Cele Mthe Aful Phor Mjan Mgen Mpne Tpal Bbur END Dmel END 20-fold-dist Fold Occurrence with Distance Method for 20 Genomes Ctra Cpne Aaeo Syne Bsub Mtub Hinf Ecol Scer Cele Mthe Aful Phor Mjan Rpro Hpyl Tpal Bbur Mgen Mpne END Dmel END 8-cog-all Occurrence of All COGs for 8 Genomes Mpne Mgen Mjan Scer Hpyl Hinf Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-meta Occurrence of Metabolism Subset of COGs for 8 Genomes Mpne Mgen Mjan Hpyl Scer Hinf Syne Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-info Occurrence of Information Subset of COGs for 8 Genomes Mjan Scer Mpne Mgen Hpyl Syne Hinf Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-cog-cell Occurrence of Cellular Processes Subset of COGs for 8 Genomes Mpne Mgen Mjan Scer Syne Ecol Hpyl Hinf END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-fold-a Occurrence of Alpha Folds Mjan Mgen Mpne Scer Hpyl Syne Hinf Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-fold-b Occurence of Beta Folds Mjan Hpyl Ecol Syne Hinf Scer Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-fold-ab Occurrence of AB Folds Mgen Mpne Mjan Hpyl Scer Syne Hinf Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-fold-apb Occurrence of Alpha plus Beta Folds Scer Hpyl Scer Hinf Ecol Mjan Mgen Mpne END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END #make sure behind fold-a 8-fold-all Occurrence of All Folds Mjan Mgen Mpne Scer Hpyl Syne Hinf Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END #make sure behind fold-all 8-fold-all-pars Occurrence of All Folds using Parsimony Mjan Hpyl Scer Syne Ecol Hinf Mpne Mgen END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 8-ribo-lsu Sequence Similarity of the Large Subunit Ribosomal RNA for 8 Genomes Mjan Scer Syne Mgen Mpne Hpyl Hinf Ecol END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END 20-ribo-ssu Sequence Similarity of Small Subunit Ribosomal RNA Cele Scer Mjan Phor Mthe Aful Aaeo Mtub Bsub Mpne Mgen Hpyl Rpro Ecol Hinf Bbur Tpal Syne Cpne Ctra END Dmel END comp-aa-per Amino Acid Composition Percentages Aaeo Mjan Phor Aful Mthe Syne Ecol Mtub Tpal Cpne Ctra Bsub Hinf Cele Scer Mpne Hpyl Mgen Bbur Rpro END Dmel END comp-aa Amino Acid Composition Absolute Values Aaeo Mjan Hinf Mthe Phor Aful Syne Bsub Ecol Mtub Cele Scer Hpyl Bbur Tpal Cpne Ctra Rpro Mgen Mpne END Dmel END comp-dint-per Dinucleotide Composition Percentages Aaeo Phor Bsub Syne Aful Ecol Tpal Mthe Mtub Mpne Scer Hpyl Hinf Cele Mgen Mjan Bbur Rpro Cpne Ctra END Dmel END trad8 Traditional 16S Ribosomal Subunit of 8 Mgen END Aaeo Mthe Phor Aful Bsub Mtub Cele Bbur Tpal Cpne Ctra Rpro END trad20 Traditional 16S Ribosomal Subunit Cele Scer Mjan Phor Mthe Aful Aaeo Mtub Bsub Mpne Mgen Hpyl Rpro Ecol Hinf Bbur Tpal Syne Cpne Ctra END Mgen Mgen Hinf END 20-sfam-pars Occurrence of All Superfamilies using Parsimony Aful Mjan Phor Mthe Aaeo Syne Scer Cele Mtub Bsub Ecol Hinf Hpyl Rpro Mgen Mpne Bbur Tpal Ctra Cpne END Dmel END 20-sfam-dist Occurrence of All Superfamilies Using Distance Aful Mjan Phor Mthe Scer Cele Aaeo Syne Ecol Hinf Bsub Mtub Hpyl Rpro Mgen Mpne Bbur Tpal Ctra Cpne END Dmel END