YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Report on SCOP Fold corresponding to representative domain d2pgd_1 [SCOP 1.39 Fold 1.079]

  Interaction Report for Fold 1.079

  Function Classification
 Augmented Flybase+ENZYMEGenProtECMIPS
d2pgd_1E-1.1.1.44NONO
  Rankings
O C C U R R E N C E S
Species 20AfulMjanMthePhorScerCeleAaeoSyneEcolBsubMtubHinfHpylMgenMpneBburTpalCtraCpneRpro
Number 2811103122243310011110
Rank 1519176811221042036691113737844809610259625963136
%ile 55384140052185954526561774741535056541
A L I G N M E N T S
  Aligned PairsUntrimmed RMSTrimmed RMS% Seq IdentityStructure P-ValueSequence P-Value 
FOLD
(General)
125.203.5113.742.56e-041
Rank 1691152137113
%ile 221009316794
FOLD (Exclusive) 0.....
Rank 575757575757
%ile 000000
E X P R E S S I O N
Absolute Reference GenomeReference TranscriptomeWild-type (Jelinsky)Wild-type (Holstege)SAGEMating-type (A)Mating-type (Alpha)GALHeat Shock 
%%E%E%E%E%E%E%E%E
Value 0.10.31.30.20.90.42.10.30.20.31.00.53.00.42.30.31.7
Rank 10454257235521848366134411752206027
%ile 5275886683769177837184819276907287
Ratio Reference GenomeReference TranscriptomeCDC28 (Yeast)CDC15 (Yeast)Alpha (Yeast)Diauxic Shift (Yeast)Sporulation (Yeast)Heat Shock (E.coli)Development (Worm)
Value 0.170.34-0.250.240.180.420.661.60
Rank 85441278615690513733
Value 728659725071838889
M I S C E L L A N E O U S
   Rank%ile Year IdentifiedRank%ile
SIZE 293 6684AGE9418755
Species 20AfulMjanMthePhorScerCeleAaeoSyneEcolBsubMtubHinfHpylMgenMpneBburTpalCtraCpneRpro
Occurrences:Size 0.0960.0030.0030.00300.0100.0030.0070.0070.0070.0140.0100.0100.003000.0030.0030.0030.0030
Rank 201133113123122152239113140172113121101133100103121115121121137
%ile 41111310130431302746404714116912121
  List of identifiers associated with Fold 1.079.
d1pgn_1 d1pgo_1 d1pgp_1 d1pgq_1 d1yvei1 d1yvej1 d1yvek1 d1yvel1 d2pgd_1 ds014__

Scop information.
RCSB PDB information.
fold_occurrences,28,151,55,#fafde3,1,91,38,#ecfde3,1,76,41,#effde3,1,81,40,#ecfde3,0,122,0,#edf6f3,3,104,52,#f7fde3,1,203,18,#e3fdea,2,66,59,#fafde3,2,91,54,#f7fde3,2,113,52,#f7fde3,4,73,65,#fdfce3,3,78,61,#fdfce3,3,44,77,#fdeee3,1,80,47,#f3fde3,0,96,4,#edf6f3,0,102,1,#edf6f3,1,59,53,#f7fde3,1,62,50,#f3fde3,1,59,56,#fafde3,1,63,54,#f7fde3,0,136,1,#edf6f3,fold_alignmnents,1,169,22,#fafde3,25.20,1,100,#fde3e3,3.51,15,93,#fde3e3,13.74,213,1,#effde3,2.56e-04,71,67,#fdebe3,1,13,94,#fde3e3,1,147,46,#e3fdfa,25.20,2,99,#fde3e3,3.51,18,93,#fdf7e3,13.74,200,27,#e3fdfa,2.56e-04,58,79,#e3fdfa,1,9,97,#fdebe3,0,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,0,57,0,#eff6f3,.,57,0,#eff6f3,.,57,0,#eff6f3,.,57,0,#eff6f3,.,57,0,#eff6f3,.,57,0,#eff6f3,1,83,-46,#e3fdfa,25.20,1,99,#e3fdfa,3.51,4,97,#e3fdfa,13.74,83,30,#e3fdfa,2.56e-04,24,80,#e3fdfa,1,1,99,#e3fdfa,0,172,-46,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,,0,100,#fde3e3,expression_abs,0.1,104,52,#f7fde3,0.3,54,75,#fdf4e3,1.3,25,88,#fde8e3,0.2,72,66,#fdf7e3,0.9,35,83,#fdebe3,0.4,52,76,#fdeee3,2.1,18,91,#fde5e3,0.3,48,77,#fdeee3,0.2,36,83,#fdebe3,0.3,61,71,#fdf4e3,1.0,34,84,#fdebe3,0.5,41,81,#fdebe3,3.0,17,92,#fde5e3,0.4,52,76,#fdeee3,2.3,20,90,#fde8e3,0.3,60,72,#fdf4e3,1.7,27,87,#fde8e3,expression_ratio,0.17,85,72,#fdfce3,0.34,44,86,#fdeee3,-,127,59,#effde3,0.25,86,72,#fdfce3,0.24,156,50,#e3fde3,0.18,90,71,#fafde3,0.42,51,83,#fdeee3,0.66,37,88,#fdebe3,1.60,33,89,#fdebe3,miscellaneous,293,66,84,#fdebe3,0.096,201,41,#effde3,0.003,133,11,#e3fdf5,0.003,113,13,#e3fdf1,0.003,123,10,#e3fdf5,0,122,1,#edf6f3,0.010,152,30,#e3fde3,0.003,239,4,#e3fdfa,0.007,113,31,#e3fde3,0.007,140,30,#e3fde3,0.007,172,27,#e3fde3,0.014,113,46,#effde3,0.010,121,40,#ecfde3,0.010,101,47,#f3fde3,0.003,133,14,#e3fdf1,0,100,1,#edf6f3,0,103,1,#edf6f3,0.003,121,6,#e3fdfa,0.003,115,9,#e3fdf5,0.003,121,12,#e3fdf5,0.003,121,12,#e3fdf5,0,137,1,#edf6f3,94,187,55,#f7fde3