YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Report on SCOP Fold corresponding to representative domain d1xxaa_ [SCOP 1.39 Fold 4.039]

  Interaction Report for Fold 4.039

  Function Classification
 Augmented Flybase+ENZYMEGenProtECMIPS
d1xxaa_D-1.2.9.1.1.1NONO
  Rankings
O C C U R R E N C E S
Species 20AfulMjanMthePhorScerCeleAaeoSyneEcolBsubMtubHinfHpylMgenMpneBburTpalCtraCpneRpro
Number 1000001111112100000010
Rank 244148129136122153203105125158153921041539610212712413563136
%ile 2800002918363733275446041111541
A L I G N M E N T S
  Aligned PairsUntrimmed RMSTrimmed RMS% Seq IdentityStructure P-ValueSequence P-Value 
FOLD
(General)
15.422.1511.761.79e-051
Rank 169114562159113
%ile 22477405894
FOLD (Exclusive) 15.422.1511.761.79e-051
Rank 52402354361
%ile 9306053798
E X P R E S S I O N
Absolute Reference GenomeReference TranscriptomeWild-type (Jelinsky)Wild-type (Holstege)SAGEMating-type (A)Mating-type (Alpha)GALHeat Shock 
%%E%E%E%E%E%E%E%E
Value ---0.7--1.0....--0.9--0.8--0.9--0.9
Rank 1531461471472041528712348155209152159157197147197
%ile 293232326295943772832926279329
Ratio Reference GenomeReference TranscriptomeCDC28 (Yeast)CDC15 (Yeast)Alpha (Yeast)Diauxic Shift (Yeast)Sporulation (Yeast)Heat Shock (E.coli)Development (Worm)
Value --------1.60
Rank 20618812720419420319019033
Value 333959343734393989
M I S C E L L A N E O U S
   Rank%ile Year IdentifiedRank%ile
SIZE 87 32423AGE9511971
Species 20AfulMjanMthePhorScerCeleAaeoSyneEcolBsubMtubHinfHpylMgenMpneBburTpalCtraCpneRpro
Occurrences:Size 0.11500000.0110.0110.0110.0110.0110.0110.0230.0110000000.0110
Rank 18714812913612214719688106140134759715310010312812513658137
%ile 4511113222464740366249111111581
  List of identifiers associated with Fold 4.039.
d1dcha_ d1dchb_ d1dchc_ d1dchd_ d1dche_ d1dchf_ d1dchg_ d1dchh_ d1dcoa_ d1dcob_
d1dcoc_ d1dcod_ d1dcoe_ d1dcof_ d1dcog_ d1dcoh_ d1dcpa_ d1dcpb_ d1dcpc_ d1dcpd_
d1dcpe_ d1dcpf_ d1dcpg_ d1dcph_ d1xxaa_ d1xxab_ d1xxac_ d1xxad_ d1xxae_ d1xxaf_
d1xxba_ d1xxbb_ d1xxbc_ d1xxbd_ d1xxbe_ d1xxbf_ d1xxca_ d1xxcb_ d1xxcc_ d1xxcd_
d1xxce_ d1xxcf_

Scop information.
RCSB PDB information.
fold_occurrences,10,244,28,#e3fde3,0,148,0,#edf6f3,0,129,0,#edf6f3,0,136,0,#edf6f3,0,122,0,#edf6f3,1,153,29,#e3fde3,1,203,18,#e3fdea,1,105,36,#ecfde3,1,125,37,#ecfde3,1,158,33,#e7fde3,1,153,27,#e3fde3,2,92,54,#f7fde3,1,104,46,#f3fde3,0,153,0,#edf6f3,0,96,4,#edf6f3,0,102,1,#edf6f3,0,127,1,#edf6f3,0,124,1,#edf6f3,0,135,1,#edf6f3,1,63,54,#f7fde3,0,136,1,#edf6f3,fold_alignmnents,1,169,22,#fafde3,5.42,114,47,#fdf7e3,2.15,56,74,#fdebe3,11.76,215,0,#effde3,1.79e-05,91,58,#fdeee3,1,13,94,#fde3e3,0,202,26,#eff6f3,.,202,26,#eff6f3,.,202,26,#eff6f3,.,202,26,#eff6f3,.,202,26,#eff6f3,.,202,26,#eff6f3,0,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,1,52,9,#fafde3,5.42,40,30,#fdf7e3,2.15,23,60,#fdebe3,11.76,54,5,#f7fde3,1.79e-05,36,37,#fdf7e3,1,1,98,#fde3e3,0,91,-60,#eff6f3,.,91,23,#eff6f3,.,91,23,#eff6f3,.,91,23,#eff6f3,.,91,23,#eff6f3,.,91,23,#eff6f3,0,172,-46,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,,0,100,#fde3e3,expression_abs,-,153,29,#edf6f3,-,146,32,#edf6f3,-0.7,147,32,#e7fde3,-,147,32,#edf6f3,-1.0,204,6,#e3fdf5,.,152,29,#e7fde3,.,87,59,#fafde3,.,123,43,#effde3,.,48,77,#fdeee3,-,155,28,#edf6f3,-0.9,209,3,#e3fdfa,-,152,29,#edf6f3,-0.8,159,26,#e3fde3,-,157,27,#edf6f3,-0.9,197,9,#e3fdf5,-,147,32,#edf6f3,-0.9,197,9,#e3fdf5,expression_ratio,-,206,33,#e3fdf5,-,188,39,#e3fdf1,-,127,59,#effde3,-,204,34,#e3fdf5,-,194,37,#e3fdf1,-,203,34,#e3fdf5,-,190,39,#e3fdf1,-,190,39,#e3fdf1,1.60,33,89,#fdebe3,miscellaneous,87,324,23,#e3fde6,0.115,187,45,#effde3,0,148,1,#edf6f3,0,129,1,#edf6f3,0,136,1,#edf6f3,0,122,1,#edf6f3,0.011,147,32,#e7fde3,0.011,196,22,#e3fde6,0.011,88,46,#effde3,0.011,106,47,#f3fde3,0.011,140,40,#ecfde3,0.011,134,36,#e7fde3,0.023,75,62,#fdfce3,0.011,97,49,#f3fde3,0,153,1,#edf6f3,0,100,1,#edf6f3,0,103,1,#edf6f3,0,128,1,#edf6f3,0,125,1,#edf6f3,0,136,1,#edf6f3,0.011,58,58,#fafde3,0,137,1,#edf6f3,95,119,71,#fdf4e3