Report on Structure d1neda

Report on SCOP Fold corresponding to representative domain d1neda_ [SCOP 1.39 Fold 4.095]

Interaction Report for Fold 4.095

Function Classification

Augmented Flybase+ENZYME GenProtEC MIPS
d1neda_ E-3.4.99.- NO NO

Rankings

O C C U R R E N C E S

Species 20 Aful Mjan Mthe Phor Scer Cele Aaeo Syne Ecol Bsub Mtub Hinf Hpyl Mgen Mpne Bbur Tpal Ctra Cpne Rpro

Number 128 6 8 8 9 22 22 5 10 8 8 8 4 2 0 0 1 1 1 1 1

Rank 40 28 15 18 15 21 60 29 28 45 42 45 33 49 96 102 59 62 59 63 63

%ile 88 81 88 86 87 90 76 82 86 81 80 77 82 68 4 1 53 50 56 54 54

A L I G N M E N T S

Aligned Pairs Untrimmed RMS Trimmed RMS % Seq Identity Structure P-Value Sequence P-Value

FOLD
(General) 44 11.24 2.07 19.21 3.05e-05 7.93e-01
Rank 43 27 61 159 88 79
%ile 80 88 72 26 59 63
FOLD (Exclusive) 0 . . . . .
Rank 57 57 57 57 57 57
%ile 0 0 0 0 0 0
E X P R E S S I O N

Absolute Reference Genome Reference Transcriptome Wild-type (Jelinsky) Wild-type (Holstege) SAGE Mating-type (A) Mating-type (Alpha) GAL Heat Shock
% % E % E % E % E % E % E % E % E
Value 0.9 1.1 0.2 1.8 0.9 1.5 0.5 1.3 - 0.7 -0.2 0.8 -0.2 0.9 -0.1 1.0 0.1
Rank 21 20 52 14 35 15 52 18 48 33 76 32 79 25 77 24 63
%ile 90 90 76 93 83 93 76 91 77 84 65 85 63 88 64 88 71
Ratio Reference Genome Reference Transcriptome CDC28 (Yeast) CDC15 (Yeast) Alpha (Yeast) Diauxic Shift (Yeast) Sporulation (Yeast) Heat Shock (E.coli) Development (Worm)
Value 1.17 1.28 0.16 0.22 0.29 0.17 0.28 0.61 6.92
Rank 17 20 94 122 96 113 113 40 6
Value 94 93 69 60 69 63 63 87 98
M I S C E L L A N E O U S

Rank %ile Year Identified Rank %ile

SIZE 243 104 75 AGE 94 187 55
Species 20 Aful Mjan Mthe Phor Scer Cele Aaeo Syne Ecol Bsub Mtub Hinf Hpyl Mgen Mpne Bbur Tpal Ctra Cpne Rpro

Occurrences:Size 0.527 0.025 0.033 0.045 0.037 0.091 0.091 0.021 0.041 0.033 0.033 0.033 0.016 0.008 0 0 0.004 0.004 0.004 0.004 0.004

Rank 65 39 22 17 21 35 76 46 37 68 59 57 62 83 100 103 112 103 112 114 108

%ile 81 73 82 87 82 83 69 72 81 71 72 71 68 46 1 1 13 18 18 17 22

List of identifiers associated with Fold 4.095.

d1ai4.1 d1ai5.1 d1ai6.1 d1ai7.1 d1ajn.1 d1ajp.1 d1ajq.1 d1ao0a2 d1ao0b2 d1ao0c2
d1ao0d2 d1apy.1 d1apy.2 d1apz.1 d1apz.2 d1ayy.1 d1ayy.2 d1ecba2 d1ecbb2 d1ecbc2
d1ecbd2 d1ecca2 d1eccb2 d1ecfa2 d1ecfb2 d1ecga2 d1ecgb2 d1ecja2 d1ecjb2 d1ecjc2
d1ecjd2 d1gdoa_ d1gdob_ d1gdoc_ d1gdod_ d1gmsa_ d1gmsc_ d1gmse_ d1gmsg_ d1gph12
d1gph22 d1gph32 d1gph42 d1neda_ d1nedb_ d1nedc_ d1pma1_ d1pma2_ d1pmaa_ d1pmab_
d1pmac_ d1pmad_ d1pmae_ d1pmaf_ d1pmag_ d1pmah_ d1pmai_ d1pmaj_ d1pmak_ d1pmal_
d1pmam_ d1pman_ d1pmao_ d1pmap_ d1pmaq_ d1pmar_ d1pmas_ d1pmat_ d1pmau_ d1pmav_
d1pmaw_ d1pmax_ d1pmay_ d1pmaz_ d1pnk.1 d1pnl.1 d1pnm.1 d1ryp1_ d1ryp2_ d1rypa_
d1rypb_ d1rypc_ d1rypd_ d1rype_ d1rypf_ d1rypg_ d1ryph_ d1rypi_ d1rypj_ d1rypk_
d1rypl_ d1rypm_ d1rypn_ d1rypo_ d1rypp_ d1rypq_ d1rypr_ d1ryps_ d1rypt_ d1rypu_
d1rypv_ d1rypw_ d1rypx_ d1rypy_ d1rypz_

Scop information.
RCSB PDB information.

fold_occurrences,128,40,88,#fde8e3,6,28,81,#fdebe3,8,15,88,#fde8e3,8,18,86,#fde8e3,9,15,87,#fde8e3,22,21,90,#fde8e3,22,60,76,#fdeee3,5,29,82,#fdebe3,10,28,86,#fde8e3,8,45,81,#fdeee3,8,42,80,#fdeee3,8,45,77,#fdeee3,4,33,82,#fdebe3,2,49,68,#fdf7e3,0,96,4,#edf6f3,0,102,1,#edf6f3,1,59,53,#f7fde3,1,62,50,#f3fde3,1,59,56,#fafde3,1,63,54,#f7fde3,1,63,54,#f7fde3,fold_alignmnents,44,43,80,#fde8e3,11.24,27,88,#fde5e3,2.07,61,72,#fdebe3,19.21,159,26,#fafde3,3.05e-05,88,59,#fdeee3,7.93e-01,79,63,#fdeee3,44,31,89,#f3fde3,11.24,29,89,#f3fde3,2.07,51,81,#e3fdf1,19.21,167,39,#e3fdfa,3.05e-05,68,75,#e3fdfa,7.93e-01,53,81,#e3fdf5,0,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,.,172,-202,#eff6f3,0,57,0,#eff6f3,.,57,0,#eff6f3,.,57,0,#eff6f3,.,57,0,#eff6f3,.,57,0,#eff6f3,.,57,0,#eff6f3,31,18,68,#e3fdfa,12.50,4,97,#e3fdfa,2.20,22,81,#e3fdfa,17.28,34,71,#e3fdfa,3.29e-06,41,65,#e3fdfa,1,1,99,#e3fdfa,0,172,-46,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,.,172,-17100,#eff6f3,,0,100,#fde3e3,expression_abs,0.9,21,90,#fde8e3,1.1,20,90,#fde8e3,0.2,52,76,#fdeee3,1.8,14,93,#fde5e3,0.9,35,83,#fdebe3,1.5,15,93,#fde5e3,0.5,52,76,#fdeee3,1.3,18,91,#fde5e3,-,48,77,#edf6f3,0.7,33,84,#fdebe3,-0.2,76,65,#fdfce3,0.8,32,85,#fdebe3,-0.2,79,63,#fdfce3,0.9,25,88,#fde8e3,-0.1,77,64,#fdfce3,1.0,24,88,#fde8e3,0.1,63,71,#fdf4e3,expression_ratio,1.17,17,94,#fde5e3,1.28,20,93,#fde8e3,0.16,94,69,#fafde3,0.22,122,60,#effde3,0.29,96,69,#fafde3,0.17,113,63,#f3fde3,0.28,113,63,#f3fde3,0.61,40,87,#fdebe3,6.92,6,98,#fde3e3,miscellaneous,243,104,75,#fdf4e3,0.527,65,81,#fdebe3,0.025,39,73,#fdf4e3,0.033,22,82,#fdebe3,0.045,17,87,#fde8e3,0.037,21,82,#fdebe3,0.091,35,83,#fdebe3,0.091,76,69,#fdf7e3,0.021,46,72,#fdf4e3,0.041,37,81,#fdebe3,0.033,68,71,#fdf7e3,0.033,59,72,#fdf4e3,0.033,57,71,#fdf4e3,0.016,62,68,#fdf7e3,0.008,83,46,#effde3,0,100,1,#edf6f3,0,103,1,#edf6f3,0.004,112,13,#e3fdf1,0.004,103,18,#e3fdea,0.004,112,18,#e3fdea,0.004,114,17,#e3fdf1,0.004,108,22,#e3fdea,94,187,55,#f7fde3