Experiment: Yeast diauxic shift					
MIPS	Description	# ORFs	Average corr. X	P-value	-log(P-value)
08.10	peroxisomal transport	12	0.646	0.00E+00	NA
04.01.04	rRNA processing	53	0.6074	0.00E+00	NA
02.10	tricarboxylic-acid pathway	22	0.5236	0.00E+00	NA
04.07	RNA transport	27	0.5111	0.00E+00	NA
04.01	rRNA transcription	94	0.4998	0.00E+00	NA
08.01	nuclear transport	48	0.4789	0.00E+00	NA
30.19	peroxisomal organization	37	0.466	0.00E+00	NA
04.01.01	rRNA synthesis	38	0.4166	0.00E+00	NA
03.16	DNA synthesis and replication	81	0.3753	0.00E+00	NA
05.04	"translation (initiation, elongation and termination)"	62	0.3674	0.00E+00	NA
01.03.01	purine-ribonucleotide metabolism	42	0.3639	0.00E+00	NA
05.01	ribosomal proteins	182	0.3389	0.00E+00	NA
04.03	tRNA transcription	75	0.3288	0.00E+00	NA
04.05.01.01	general transcription activities	60	0.3099	0.00E+00	NA
03.19	recombination and DNA repair	86	0.2947	0.00E+00	NA
02.13	respiration	69	0.2873	0.00E+00	NA
05	PROTEIN SYNTHESIS	320	0.2777	0.00E+00	NA
30.10	nuclear organization	715	0.2562	0.00E+00	NA
04	TRANSCRIPTION	708	0.2432	0.00E+00	NA
30.03	organization of cytoplasm	545	0.2265	0.00E+00	NA
04.05	mRNA transcrition	511	0.2238	0.00E+00	NA
04.05.01	mRNA synthesis	397	0.223	0.00E+00	NA
03.22	cell cycle control and mitosis	315	0.2213	0.00E+00	NA
03.07	"pheromone response, mating-type determination, sex-specific proteins"	156	0.2171	0.00E+00	NA
03	"CELL GROWTH, CELL DIVISION AND DNA SYNTHESIS"	752	0.2058	0.00E+00	NA
01.01.01	amino-acid biosynthesis	114	0.239	2.00E-04	3.7
01.02.04	regulation of nitrogen and sulphur utilization 	28	0.3715	8.00E-04	3.1
02.22	glyoxylate cycle	6	0.8136	1.00E-03	3.0
03.22.01	cell cycle check point proteins	21	0.3741	1.40E-03	2.9
30.16	mitochondrial organization	312	0.1844	2.00E-03	2.7
30.13	organization of chromosome structure	40	0.2991	2.40E-03	2.6
11.04	"DNA repair (direct repair, base excision repair and nucleotide excision repair)"	80	0.2376	2.40E-03	2.6
04.05.05	"mRNA processing (5'-end, 3'-end processing and mRNA degradation)"	36	0.2998	3.00E-03	2.5
06.13.04	lysosomal and vacuolar degradation	17	0.4051	3.20E-03	2.5
05.10	tRNA-synthetases	37	0.3005	3.20E-03	2.5
30.07	organization of endoplasmatic reticulum 	113	0.2177	4.60E-03	2.3
04.03.01	tRNA synthesis	23	0.3349	5.60E-03	2.3
04.03.03	tRNA processing	36	0.2708	9.20E-03	2.0
30.04	organization of cytoskeleton	91	0.215	1.06E-02	2.0
08.07	"vesicular transport (Golgi network, etc.)"	98	0.212	1.16E-02	1.9
10.04.11	key kinases	2	0.9403	1.24E-02	1.9
06.13.01	cytoplasmic degradation	93	0.2136	1.24E-02	1.9
03.13	meiosis	92	0.213	1.26E-02	1.9
90	RETROTRANSPOSONS AND PLASMID PROTEINS 	7	0.5299	1.30E-02	1.9
03.04	"budding, cell polarity and filament formation"	161	0.1948	1.60E-02	1.8
10.04.13	key phosphatases	2	0.9283	1.64E-02	1.8
03.25	cytokinesis	30	0.2701	1.70E-02	1.8
10.02.07	G-proteins	3	0.8122	2.10E-02	1.7
04.03.99	other tRNA-transcription activities	4	0.6932	2.42E-02	1.6
01.05.07	carbohydrate transport	41	0.2417	2.42E-02	1.6
04.03.06	tRNA modification	12	0.3613	2.54E-02	1.6
09.04	biogenesis of cytoskeleton	17	0.3108	3.00E-02	1.5
30.05	organization of centrosome	27	0.2499	4.26E-02	1.4
06.13	proteolysis	143	0.1832	4.68E-02	1.3
01.20.05	amines  metabolism 	4	0.5921	5.02E-02	1.3
01.20	secondary metabolism 	4	0.5921	5.02E-02	1.3
11.11	ageing	2	0.8634	5.20E-02	1.3
01.01.04	regulation of amino-acid metabolism	32	0.23	5.32E-02	1.3
02.19	"metabolism of energy reserves (glycogen, trehalose)"	37	0.2208	5.88E-02	1.2
10.05.11	key kinases	4	0.5549	6.36E-02	1.2
30.09	organization of intracellular transport vesicles	41	0.2126	7.30E-02	1.1
04.05.03	mRNA processing (splicing)	70	0.1926	7.40E-02	1.1
01.03.16	polynucleotide degradation	20	0.2461	7.50E-02	1.1
01.03.13	regulation of nucleotide metabolism	13	0.2696	9.34E-02	1.0
11.99	other cell rescue activities	9	0.3027	9.48E-02	1.0
01.02	nitrogen and sulphur metabolism	73	0.1869	9.82E-02	1.0
04.05.01.07	chromatin modification	30	0.2121	1.04E-01	1.0
01.07.04	"utilization of vitamins, cofactors, and prosthetic groups "	7	0.3261	1.06E-01	1.0
07.19	allantoin and allantoate transporters	9	0.2864	1.09E-01	1.0
30.08	organization of Golgi 	64	0.1855	1.15E-01	0.9
02.01	glycolysis	29	0.2081	1.20E-01	0.9
10.05.99	other pheromone response activities	18	0.2286	1.21E-01	0.9
07.25	ABC transporters	28	0.2083	1.22E-01	0.9
01.03	nucleotide metabolism 	134	0.1708	1.23E-01	0.9
10.05	pheromone response generation	34	0.1979	1.28E-01	0.9
01.07	"biosynthesis of vitamins, cofactors, and prosthetic groups "	80	0.1789	1.31E-01	0.9
03.01	cell growth  	71	0.1803	1.34E-01	0.9
01.03.10	metabolism of cyclic and unusual nucleotides	8	0.2848	1.39E-01	0.9
07.07	sugar and carbohydrate transporters	44	0.1873	1.40E-01	0.9
01.02.07	nitrogen and sulphur transport	8	0.2829	1.41E-01	0.8
09.08	biogenesis of Golgi 	2	0.6647	1.87E-01	0.7
01.07.01	"metabolism of vitamins, cofactors, and prosthetic groups "	60	0.1735	1.94E-01	0.7
09.19	peroxisomal biogenesis	2	0.6512	1.96E-01	0.7
09.13	biogenesis of chromosome structure	17	0.1982	2.16E-01	0.7
08.99	other intracellular-transport activities	22	0.1886	2.29E-01	0.6
04.99	other transcription activities	58	0.1705	2.29E-01	0.6
07.04.01	"metal ion transporters (Cu, Fe, etc.)"	21	0.1824	2.47E-01	0.6
04.05.99	other mRNA-transcription activities	10	0.2058	2.50E-01	0.6
10.02.11	key kinases	8	0.2171	2.50E-01	0.6
01.03.04	pyrimidine-ribonucleotide metabolism	28	0.176	2.50E-01	0.6
06.07	"protein modification (glycolsylation, acylation, myristylation, palmitylation, farnesylation and processing)  "	163	0.1566	2.53E-01	0.6
11.07.01	detoxification involving cytochrome P450	4	0.2826	2.58E-01	0.6
13.01	homeostasis of metal ions	55	0.1655	2.72E-01	0.6
01.07.99	"other vitamin, cofactor, and prosthetic group activities  "	7	0.2084	2.84E-01	0.5
09.10	nuclear biogenesis	5	0.228	2.90E-01	0.5
08.22	cytoskeleton-dependent transport	27	0.1704	3.05E-01	0.5
10.03.13	key phosphatases	2	0.4928	3.09E-01	0.5
07.04	ion transporters	69	0.1572	3.32E-01	0.5
01.01.99	other amino-acid metabolism activities	4	0.2205	3.34E-01	0.5
03.10	sporulation and germination	97	0.155	3.37E-01	0.5
03.99	"other cell growth, cell division and DNA synthesis activities"	9	0.1643	3.86E-01	0.4
01.04.01	phosphate utilization	13	0.1612	3.88E-01	0.4
02.25	beta-oxidation of fatty acids	6	0.1713	3.89E-01	0.4
01.06.99	"other lipid, fatty-acid and sterol metabolism proteins"	11	0.1561	3.94E-01	0.4
09	CELLULAR BIOGENESIS   (proteins are not localized to the corresponding organelle)	163	0.149	3.95E-01	0.4
11.10	cell death 	10	0.1586	3.96E-01	0.4
10.02.99	other morphogenetic activities	11	0.1549	3.99E-01	0.4
30.99	other cellular organization	4	0.1687	4.06E-01	0.4
09.07	biogenesis of endoplasmatic reticulum	3	0.193	4.06E-01	0.4
07.04.07	"anion transporters (Cl, SO4, PO4, etc.)"	16	0.1555	4.06E-01	0.4
01.01	amino-acid metabolism	199	0.1488	4.20E-01	0.4
01.06.01	"lipid, fatty-acid and sterol biosynthesis"	94	0.1495	4.31E-01	0.4
10.03.11	key kinases	8	0.1482	4.31E-01	0.4
07.16	purine and pyrimidine transporters	14	0.1433	4.62E-01	0.3
10.02	morphogenesis	27	0.1451	4.68E-01	0.3
06.01	protein folding and stabilization	53	0.1445	4.80E-01	0.3
10.05.07	G-proteins	7	0.1316	4.87E-01	0.3
07.10	amino-acid transporters	25	0.1411	4.88E-01	0.3
01.06.10	"regulation of lipid, fatty-acid and sterol biosynthesis"	19	0.1395	4.89E-01	0.3
07.04.04	"other cation transporters (Na ,K ,Ca ,NH4 ,etc.)"	34	0.1415	5.03E-01	0.3
08.16	extracellular transport	35	0.1379	5.34E-01	0.3
06.13.07	other subcellular degradation	14	0.1265	5.44E-01	0.3
01.04	phosphate metabolism 	31	0.1348	5.47E-01	0.3
01.03.19	nucleotide transport	12	0.1187	5.55E-01	0.3
09.01	biogenesis of cell wall	98	0.1399	5.66E-01	0.2
06.04	"protein targeting, sorting and translocation"	115	0.1404	5.84E-01	0.2
01.03.07	deoxyribonucleotide metabolism 	12	0.1095	5.94E-01	0.2
06	PROTEIN DESTINATION	511	0.1418	6.06E-01	0.2
10.04.09	regulation of G-protein activity	4	0.0403	6.30E-01	0.2
01.07.10	"transport of vitamins, cofactors, and prosthetic groups "	3	-0.0122	6.31E-01	0.2
01.06.16	lipid and fatty-acid binding	3	-0.0149	6.35E-01	0.2
01.01.07	amino-acid transport	23	0.1198	6.39E-01	0.2
10.04	nutritional response pathway	22	0.119	6.40E-01	0.2
10.05.09	regulation of G-protein activity	2	-0.1221	6.69E-01	0.2
07.01	ion channels 	7	0.0658	6.87E-01	0.2
05.99	other protein-synthesis activities	12	0.09	6.93E-01	0.2
05.07	translational control	28	0.1144	6.96E-01	0.2
01.06.04	breakdown of lipids and phospholipids	15	0.0929	7.28E-01	0.1
09.25	vacuolar and lysosomal biogenesis 	13	0.0893	7.31E-01	0.1
01.04.07	phosphate transport	10	0.0724	7.39E-01	0.1
01.04.04	regulation of phosphate utilization	8	0.0599	7.41E-01	0.1
10.03	osmosensing	17	0.0957	7.46E-01	0.1
02.99	other energy generation activities	14	0.086	7.55E-01	0.1
10.05.01	receptor proteins	2	-0.3095	7.61E-01	0.1
09.16	mitochondrial biogenesis	9	0.0575	7.69E-01	0.1
02	ENERGY	224	0.1343	7.70E-01	0.1
06.99	other protein-destination activities	5	-0.0034	7.74E-01	0.1
10	SIGNAL TRANSDUCTION	122	0.1273	7.76E-01	0.1
10.04.99	other nutritional-response activities	9	0.0401	8.23E-01	0.1
08.13	vacuolar transport	43	0.1079	8.28E-01	0.1
07.28	drug transporters	34	0.1015	8.42E-01	0.1
30.22	endosomal organization 	8	0.0258	8.45E-01	0.1
07.13	lipid transporters	7	0.003	8.59E-01	0.1
01.07.07	"regulation of vitamins, cofactors, and prosthetic groups "	3	-0.2041	8.60E-01	0.1
02.04	gluconeogenesis	12	0.048	8.65E-01	0.1
08.04	mitochondrial transport	68	0.1117	8.67E-01	0.1
10.03.05	mediator proteins	3	-0.2108	8.67E-01	0.1
07.99	other transport facilitators	51	0.1064	8.69E-01	0.1
06.10	assembly of protein complexes	86	0.1142	8.88E-01	0.1
04.01.99	other rRNA-transcription activities	3	-0.2383	8.94E-01	0.0
02.16	fermentation	32	0.0885	8.98E-01	0.0
01.05.04	regulation of carbohydrate utilization	120	0.1174	9.03E-01	0.0
30.25	vacuolar and lysosomal organization 	47	0.0971	9.16E-01	0.0
98	CLASSIFICATION NOT YET CLEAR-CUT 	147	0.1185	9.24E-01	0.0
10.04.07	G-proteins	3	-0.2712	9.28E-01	0.0
01.03.99	other nucleotide-metabolism activities	7	-0.0328	9.32E-01	0.0
10.02.09	regulation of G-protein activity	5	-0.1121	9.46E-01	0.0
10.03.99	other osmosensing activities	4	-0.1644	9.50E-01	0.0
10.99	other signal-transduction activities	37	0.0799	9.54E-01	0.0
30.01	organization of cell wall	28	0.067	9.61E-01	0.0
11	"CELL RESCUE, DEFENSE, CELL DEATH AND AGEING "	330	0.1215	9.62E-01	0.0
01.06.13	lipid and fatty-acid transport	17	0.0399	9.62E-01	0.0
01.05.99	other carbohydrate metabolism activities	2	-0.8127	9.65E-01	0.0
01.02.01	nitrogen and sulphur utilization	37	0.0726	9.72E-01	0.0
01.06	"lipid, fatty-acid and sterol metabolism"	175	0.1112	9.76E-01	0.0
11.01	stress response	147	0.1088	9.76E-01	0.0
01.06.07	"lipid, fatty-acid and sterol utilization"	26	0.0487	9.82E-01	0.0
02.07	pentose-phosphate pathway	9	-0.0418	9.82E-01	0.0
11.07	detoxificaton	94	0.0969	9.83E-01	0.0
30.90	extracellular/secretion proteins	20	0.0288	9.86E-01	0.0
08.19	cellular import	99	0.0957	9.87E-01	0.0
01.01.10	amino-acid degradation	36	0.0524	9.94E-01	0.0
08	INTRACELLULAR TRANSPORT	415	0.1162	9.96E-01	0.0
13	IONIC HOMEOSTASIS  	114	0.0888	9.98E-01	0.0
01	METABOLISM	1005	0.1001	9.98E-01	0.0
30.02	organization of plasma membrane	141	0.0927	9.98E-01	0.0
07	TRANSPORT FACILITATION	290	0.0873	9.98E-01	0.0
01.05	carbohydrate metabolism	409	0.0779	9.98E-01	0.0
01.05.01	carbohydrate utilization	256	0.075	9.98E-01	0.0
13.04	homeostasis of other ions	60	0.042	1.00E+00	0.0
07.22	transport ATPases	38	0.0219	1.00E+00	0.0