Comparison of Different Algorithms

Algorithms	Tatal number of gene pairs	Gene pairs witeh same known function		Gene pairs without same known function
		Number	Percentage	Number	Percentage
Local clustering (P-value=2.7E-03)	250,393	23,722	9.473	226,670	90.526
K means (2000 groups)	21,672	926	4.273	20,746	95.727
Single linkage (threshold=1)	7,977	4,0377	50.608	3,940	49.392
Multiple linkage (threshold=1)	153	77	50.327	76	49.673

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