BioInformatics Lecture Notes
 
The MDM78 PAM 250 matrix:
Dayhoff table (Dayhoff, M. O., Schwartz, R. M., and Orcutt, B. C. [1979]
in Atlas of Protein Sequence and Structure, Dayhoff, M. O. Ed, pp.
345-352 (Figure 84), National Biomedical Research Foundation, Washington
D.C.) rescaled by dividing each value by 5.0


                     May 24, 1990  16:47

  A    B    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y    Z   
 0.4  0.0 -0.4  0.0  0.0 -0.8  0.2 -0.2 -0.2 -0.2 -0.4 -0.2  0.0  0.2  0.0 -0.4  0.2  0.2  0.0 -1.2 -0.6  0.0 A
      0.5 -0.9  0.6  0.4 -1.0  0.1  0.3 -0.4  0.1 -0.7 -0.5  0.4 -0.2  0.3 -0.1  0.1  0.0 -0.4 -1.1 -0.6  0.4 B
           2.4 -1.0 -1.0 -0.8 -0.6 -0.6 -0.4 -1.0 -1.2 -1.0 -0.8 -0.6 -1.0 -0.8  0.0 -0.4 -0.4 -1.6  0.0 -1.0 C
                0.8  0.6 -1.2  0.2  0.2 -0.4  0.0 -0.8 -0.6  0.4 -0.2  0.4 -0.2  0.0  0.0 -0.4 -1.4 -0.8  0.5 D
                     0.8 -1.0  0.0  0.2 -0.4  0.0 -0.6 -0.4  0.2 -0.2  0.4 -0.2  0.0  0.0 -0.4 -1.4 -0.8  0.6 E
                          1.8 -1.0 -0.4  0.2 -1.0  0.4  0.0 -0.8 -1.0 -1.0 -0.8 -0.6 -0.6 -0.2  0.0  1.4 -1.0 F
                               1.0 -0.4 -0.6 -0.4 -0.8 -0.6  0.0 -0.2 -0.2 -0.6  0.2  0.0 -0.2 -1.4 -1.0 -0.1 G
                                    1.2 -0.4  0.0 -0.4 -0.4  0.4  0.0  0.6  0.4 -0.2 -0.2 -0.4 -0.6  0.0 -0.4 H
                                         1.0 -0.4  0.4  0.4 -0.4 -0.4 -0.4 -0.4 -0.2  0.0  0.8 -1.0 -0.2 -0.4 I
                                              1.0 -0.6  0.0  0.2 -0.2  0.2  0.6  0.0  0.0 -0.4 -0.6 -0.8  0.1 K
                                                   1.2  0.8 -0.6 -0.6 -0.4 -0.6 -0.6 -0.4  0.4 -0.4 -0.2 -0.5 L
                                                        1.2 -0.4 -0.4 -0.2  0.0 -0.4 -0.2  0.4 -0.8 -0.4 -0.3 M
                                                             0.4 -0.2  0.2  0.0  0.2  0.0 -0.4 -0.8 -0.4  0.2 N
                                                                  1.2  0.0  0.0  0.2  0.0 -0.2 -1.2 -1.0 -0.1 P
                                                                       0.8  0.2 -0.2 -0.2 -0.4 -1.0 -0.8  0.6 Q
                                                                            1.2  0.0 -0.2 -0.4  0.4 -0.8  0.6 R
                                                                                 0.4  0.2 -0.2 -0.4 -0.6 -0.1 S
                                                                                      0.6  0.0 -1.0 -0.6 -0.1 T
                                                                                           0.8 -1.2 -0.4 -0.4 V
                                                                                                3.4  0.0 -1.2 W
                                                                                                     2.0 -0.8 Y
                                                                                                          0.6 Z

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