This is a header file associated with the text table scoppair_annote_sfam_final.txt. It is derived from the run on 1 August with the run header show at end. It was prepared by Mark Gerstein . The table has the following fields. whether position field -- field field in name description is a table key ----- ------- ----- -- -------------- ##_ key__ 0 did1 -- scop domain id 1 ##_ key__ 1 did2 -- scop domain id 2 ##_ value 2 nodot -- ##_ value 3 len60 -- 1 if both proteins in this pair are longer than 60 residues ##_ value 4 SF -- always S ##_ value 5 fafnd -- this pair can be found with fasta ##_ value 6 a_len -- length of domain 1 ##_ value 7 b_len -- length of domain 2 ##_ value 8 e_val -- FASTA e-value in comparing domain 1 with domain 2 (999 for no match) ##_ value 9 re_val -- FASTA e-value in comparing domain 2 with domain 1 (999 for no match) ##_ value 10 a_sel2 ##_ value 11 b_sel2 ##_ value 12 sali ##_ value 13 co ##_ value 14 N -- number of residues matched in structural alignment ##_ value 15 N_ne ##_ value 16 N_old ##_ value 17 rms -- RMS from structural alignment ##_ value 18 rms_ne ##_ value 19 rms_old .. _ .. _ .. .. _ .. _ .. .. _ .. _ .. .. _ .. _ .. .. _ .. _ .. .. _ .. ### Table scoppair_annote5 ### ~~~~~ ### associated with file ./tbl/scoppair_annote5.txt. ### has key-value delimiter / | / ### (assoc. pattern is /\t\|\t/), ### internal delimiter / /, ### skip 0, ### and format %s%s%s ### ### currently contains memory resident tuples ### and 1 comments. ### has fields ( did1 did2 | nodot len60 SF fafnd a_len b_len e_val re_val a_sel2 b_sel2 sali co N N_ne N_old rms rms_ne rms_old ) ### generated by script annote-scoppairs-2.pl, ### which is being interpreted by perl at Fri Aug 1 11:54:58 EDT 1997 ### with pid 7081 on nj.csb.yale.edu. ### .........................................................................., ##_ key__ 0 did1 ##_ key__ 1 did2 ##_ value 2 nodot ##_ value 3 len60 ##_ value 4 SF ##_ value 5 fafnd ##_ value 6 a_len ##_ value 7 b_len ##_ value 8 e_val ##_ value 9 re_val ##_ value 10 a_sel2 ##_ value 11 b_sel2 ##_ value 12 sali ##_ value 13 co ##_ value 14 N ##_ value 15 N_ne ##_ value 16 N_old ##_ value 17 rms ##_ value 18 rms_ne ##_ value 19 rms_old ### .........................................................................., # # scoppair_annote5 # Characterization of each scop pair. # Is it a fold? What RMS? &c. ### ...........................................................................