Tables of aligned scop pairs

See pairtables.hdr for format:

FamiPairsSeq.txt - domains which share a SCOP family, aligned by sequence
FamiPairsStr.txt - domains which share a SCOP family, aligned by structure
SuprPairsSeq.txt - domains which share a SCOP superfamily but come from different families, aligned by sequence
SuprPairsStr.txt - aligned by structure
FoldPairsSeq.txt - domains which share a SCOP fold but come from different superfamilies
FoldPairsStr.txt
allPairs.txt - a composite table of family pairs aligned by sequence, and superfamily and fold pairs aligned by structure

Alignment data

See alignments.hdr for format:

allSeqAlignments.txt - contains the alignment data based on amino acid sequence
allStrAlignments.txt - contains the alignment data based on 3D structure (presented in same matter as sequence-based alignments

See stats.hdr for format:

scopAATGstats.txt - all relevant data for each scop domain
foldstats.txt - data for each SCOP fold, including all superfamilies and families below it
foldOstats.txt - data for each SCOP fold, excluding superfamilies and families below (only pairs in which the domains come from different families are considered)
suprstats.txt - data for each SCOP superfamily, including its families
suprOstats.txt - data for each SCOP superfamily--only pairs of domains from different families
famistats.txt - data for each SCOP family

See lookups.hdr for format:

fami_table.txt - representatives of SCOP families
supr_table.txt - representatives of SCOP superfamilies
fold_table.txt - representatives of SCOP folds
julia_table.txt - functional representatives according to classification from Wilson et al. JMB 297(1)
mips_table.txt - functional representatives according to MIPS classification for yeast
riley_table.txt - functional representatives according to GenProtEC classification for E. coli

See dirdom.hdr for format:

dir.dom.scop1-4.txt - mapping of SCOP domain identifiers to domains in PDB proteins and to hierarchical identifiers: SCOP version 1.39, only the main classes (1-4)
scop135_dirdom.txt - same as above but for SCOP version 1.35, and including all classes