YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Rank report of 2tsc

The top-five ranked attributes
 F(spor)
fluctuation of expression levels in diauxic shift
I(pdbb,all)
interaction with beta proteins on different chains [yeast]
F(alpha)
fluctuation of expression levels in CDC15
B(Ile,pdb100)
composition percentage of His for pdb100d
I(pdbab,inter)
interaction with alpha-beta proteins on same chains [pdb]
value0.5400.55.165
rank6471514
%97.097.096.696.495.6


The bottom-five ranked attributes
 L(vegyou)
fold enrichment in wild type (J)
N(foldonly)
P-value (seq.)
I(scerab,all)
degree of rotation angle about hinge [Ave.]
J(pdbb,intra)
degree of rotation angle about hinge [Max.]
C(gal)
level galactose
value-1.08.87E-502.172.170.0
rank2022079999211
% 5.2 4.2 2.0 2.0 1.9


All attributes
  valuerank%
F(spor)fluctuation of expression levels in diauxic shift0.546 97.0
I(pdbb,all)interaction with beta proteins on different chains [yeast]04 97.0
F(alpha)fluctuation of expression levels in CDC150.57 96.6
B(Ile,pdb100)composition percentage of His for pdb100d5.115 96.4
I(pdbab,inter)interaction with alpha-beta proteins on same chains [pdb]6514 95.6
B(Glu,pdb100)composition percentage of Asp for pdb100d8.521 95.0
I(pdbab,intra)interaction with alpha-beta proteins [pdb]7119 94.0
I(pdball,inter)interaction on same chains [pdb]6520 93.7
B(Ile,pdb40)composition percentage of His for pdb40d4.229 92.9
B(Glu,pdb40)composition percentage of Asp for pdb40d8.034 91.7
B(Arg,pdb40)composition percentage of Gln for pdb40d6.134 91.7
X(enz)total number of functions associated with the fold218 91.5
B(Gly,pdb100)composition percentage of Phe for pdb100d5.537 91.2
B(Tyr,pdb40)composition percentage of Trp for pdb40d2.738 90.7
B(Ala,pdb40)number of enzymatic functions associated with the fold212 90.2
I(pdba,all)interaction with alpha proteins on different chains [yeast]013 90.2
G(mpne)fold occurrence in Mgen139 88.5
I(pdball,intra)interaction types [pdb]7140 87.5
G(bbur)fold occurrence in Mpne145 86.8
B(Tyr,pdb100)composition percentage of Trp for pdb100d2.460 85.7
B(Ser,pdb40)interaction with alpha-beta proteins on different chains [pdb]140 85.1
F(diaux)fluctuation of expression levels in alpha0.3930 84.5
P(all)seq. identity45.1135 83.8
X(age)average length of fold28969 83.6
I(scerb,inter)interaction with beta proteins on same chains [yeast]022 83.3
B(Met,pdb100)composition percentage of Leu for pdb100d10.972 82.9
G(mjan)fold occurrence in Aful260 82.4
B(Arg,pdb100)composition percentage of Gln for pdb100d5.075 82.1
I(pdbb,inter)interaction with beta proteins on same chains [pdb]057 82.1
B(Gly,pdb40)composition percentage of Phe for pdb40d4.973 82.1
I(scera,inter)interaction with alpha proteins on same chains [yeast]024 81.8
I(pdba,inter)interaction with alpha proteins on same chains [pdb]060 81.2
B(Met,pdb40)composition percentage of Leu for pdb40d10.677 81.1
I(scerb,intra)interaction with beta proteins [yeast]025 81.1
I(scerb,all)number of putative hinges found in fold [Ave.]2.0020 80.2
B(Trp,pdb100)interaction with beta proteins on different chains [pdb]065 79.6
F(deve)fluctuation of expression levels in heat shock (E.coli)0.6140 78.8
B(Tyr,pdb100)interaction with alpha-beta proteins on different chains [pdb]669 78.4
I(pdbab,all)interaction with alpha-beta proteins on different chains [yeast]029 78.0
G(mthe)fold occurrence in Mjan176 77.6
B(Val,pdb100)interaction with alpha proteins on different chains [pdb]075 76.5
G(phor)fold occurrence in Mthe181 76.2
B(Asp,pdb40)composition percentage of Cys for pdb40d1.9102 75.0
B(Gln,pdb100)composition percentage of Pro for pdb100d5.7108 74.3
I(scera,intra)interaction with alpha proteins [yeast]034 74.2
B(Asn,pdb40)composition percentage of Met for pdb40d2.7106 74.0
U(foldonly)pair number (Domain exclusive)057 73.6
B(Glu,pdb100)interaction with alpha-beta proteins [pdb]171 73.5
I(pdball,all)interaction on different chains [yeast]037 72.0
I(pdbb,inter)interaction with alpha proteins on different chains [pdb]077 71.3
I(pdball,inter)composition percentage of Tyr for pdb100d4.0121 71.2
I(pdbb,intra)interaction with beta proteins [pdb]093 70.8
I(pdbab,inter)interaction with beta proteins on different chains [pdb]080 70.1
G(hpyl)fold occurrence in Hinf1104 69.4
B(Lys,pdb40)composition percentage of Ile for pdb40d6.1125 69.4
J(pdba,intra)number of putative hinges found in fold [Max.]231 69.3
I(pdba,intra)interaction with alpha proteins [pdb]0105 67.1
G(mtub)fold occurrence in Bsub2112 67.1
B(Gln,pdb40)composition percentage of Pro for pdb40d5.3140 65.7
B(Asp,pdb100)interaction with beta proteins [pdb]094 64.9
G(scer)fold occurrence in Phor0122 64.1
I(pdba,inter)interaction on different chains [pdb]197 63.8
G(ctra)fold occurrence in Tpal0124 63.5
G(hinf)fold occurrence in Mtub1125 63.2
B(Cys,pdb100)interaction with alpha proteins [pdb]0100 62.7
G(tpal)fold occurrence in Bbur0127 62.6
G(cpne)fold occurrence in Ctra0135 60.3
N(all)fold occurrence in Rpro0136 60.0
G(rpro)fold occurrence in Cpne0137 59.7
J(pdball,inter)energy difference between start and end states [Ave.]37987.2042 58.4
B(Asn,pdb100)composition percentage of Met for pdb100d2.2176 58.1
B(Ala,pdb100)composition percentage of Tyr for pdb40d3.4175 57.1
B(Thr,pdb100)interaction on different chains [pdb]6141 55.8
G(cele)fold occurrence in Scer1153 55.0
G(mgen)fold occurrence in Hpyl0153 55.0
B(Asp,pdb100)composition percentage of Cys for pdb100d1.2194 53.8
I(scerab,inter)interaction with alpha-beta proteins on same chains [yeast]161 53.8
B(Lys,pdb100)composition percentage of Ile for pdb100d5.4195 53.6
G(bsub)fold occurrence in Ecol1158 53.5
G(syne)fold occurrence in Aaeo0163 52.1
B(Pro,pdb40)composition percentage of Asn for pdb40d4.2198 51.5
B(Ser,pdb40)composition percentage of Arg for pdb40d4.9200 51.0
J(pdbb,inter)number of residues [Ave.]286.0050 50.5
B(Val,pdb40)composition percentage of Thr for pdb40d5.3204 50.0
B(Ala,pdb100)interaction types [pdb]1140 47.8
B(Val,pdb100)composition percentage of Thr for pdb100d5.2224 46.7
J(pdbab,intra)energy difference between start and end states [Max.]37987.2054 46.5
J(pdba,all)number of residues [Max.]28654 46.5
I(scerab,intra)interaction with alpha-beta proteins [yeast]172 45.5
J(pdba,inter)maximum energy difference [Ave.]49425.1058 42.6
G(ecol)fold occurrence in Syne0200 41.2
B(Ser,pdb100)composition percentage of Arg for pdb100d4.3250 40.5
B(His,pdb40)composition percentage of Gly for pdb40d6.8245 40.0
U(all)pair number3130 39.8
I(scerall,inter)interaction on same chains [yeast]182 37.9
B(Leu,pdb100)composition percentage of Lys for pdb100d5.5265 36.9
J(pdball,all)maximum energy difference [Max.]49425.1066 34.7
F(heatec)fluctuation of expression levels in sporulation0.26124 34.4
X(pseu)year of fold determined91285 32.1
E(ref)fold percentage in reference transcriptome0.0146 32.1
E(heat)fold percentage in heat shock0.0147 31.6
B(His,pdb100)composition percentage of Gly for pdb100d6.2288 31.4
C(mateal)level mating type alpha0.1148 31.2
E(vegsam)fold percentage in wild type (J)0.0147 31.0
E(mateal)fold percentage in mating type alpha0.0152 29.3
L(ref)fold percentage in reference genome0.0153 28.8
E(vegyou)fold percentage in wild type (H)0.0152 28.3
I(scerall,intra)interaction types [yeast]195 28.0
E(matea)fold percentage in mating type a0.0155 27.9
C(sage)level SAGE0.0156 27.4
G(aaeo)fold occurrence in Cele0248 27.1
E(gal)fold percentage in galactose0.0157 27.0
L(gal)fold enrichment in mating type alpha-0.8159 26.0
B(Pro,pdb100)composition percentage of Asn for pdb100d3.3311 26.0
B(Leu,pdb40)composition percentage of Lys for pdb40d4.5314 23.0
I(scera,all)overall RMS between structures [Ave.]4.9879 21.8
C(heat)level heat shock0.1172 20.0
B(Cys,pdb100)composition percentage of Ala for pdb100d5.8338 19.5
B(Phe,pdb40)composition percentage of Glu for pdb40d4.9330 19.1
B(Phe,pdb100)composition percentage of Glu for pdb100d4.9340 19.0
B(Trp,pdb100)composition percentage of Val for pdb100d5.0341 18.8
B(Thr,pdb100)composition percentage of Ser for pdb100d4.0343 18.3
I(scerall,all)maximal Ca atom displacement between structures[Ave.]19.3483 17.8
J(pdball,intra)overall RMS between structures [Max.]4.9883 17.8
C(matea)level mating type a0.1177 17.7
R(all)untrimmed RMS2.97178 17.6
B(Trp,pdb40)composition percentage of Val for pdb40d4.9343 15.9
S(all)trimmed RMS0.51182 15.7
B(Thr,pdb40)composition percentage of Ser for pdb40d3.8344 15.7
J(pdbab,inter)maximal Ca atom displacement between structures[Max.]19.3487 13.9
L(gal)fold enrichment in mating type a-0.8186 13.5
B(Cys,pdb40)composition percentage of Ala for pdb40d4.9366 10.3
L(vegsam)fold enrichment in reference transcriptome-0.9193 10.2
X(size)fluctuation of expression levels in development (worm)0.48194 10.2
C(vegyou)level wild type (H)0.4195 9.3
L(heat)fold enrichment in galactose-0.9197 8.4
F(cdc28)fold enrichment in heat shock-0.9197 8.4
L(sage)fold enrichment in wild type (H)-0.9195 8.0
C(ref)level transcriptome0.4200 7.0
C(vegsam)level wild type (J)0.1202 6.0
Q(all)P-value (str.)6.28E-27204 5.6
L(vegyou)fold enrichment in wild type (J)-1.0202 5.2
N(foldonly)P-value (seq.)8.87E-50207 4.2
I(scerab,all)degree of rotation angle about hinge [Ave.]2.1799 2.0
J(pdbb,intra)degree of rotation angle about hinge [Max.]2.1799 2.0
C(gal)level galactose0.0211 1.9