YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Rank report of 1ubs

The top-five ranked attributes
 G(bsub)
fold occurrence in Ecol
B(Tyr,pdb100)
interaction with alpha-beta proteins on different chains [pdb]
I(pdbab,intra)
interaction with alpha-beta proteins [pdb]
B(Ser,pdb40)
interaction with alpha-beta proteins on different chains [pdb]
U(foldonly)
pair number (Domain exclusive)
value9338756871725
rank11111
%99.799.799.799.699.5


The bottom-five ranked attributes
 P(all)
seq. identity
Q(foldonly)
P-value (str. DE)
C(refg)
P-value (seq. DE)
F(cdc15)
fluctuation of expression levels in CDC28
X(pseu)
year of fold determined
value18.621.95E-089.99E-010.176
rank1714752117403
%20.816.1 7.1 7.1 4.0


All attributes
  valuerank%
G(bsub)fold occurrence in Ecol931 99.7
B(Tyr,pdb100)interaction with alpha-beta proteins on different chains [pdb]3871 99.7
I(pdbab,intra)interaction with alpha-beta proteins [pdb]5681 99.7
B(Ser,pdb40)interaction with alpha-beta proteins on different chains [pdb]71 99.6
U(foldonly)pair number (Domain exclusive)17251 99.5
E(ref)fold percentage in reference transcriptome10.71 99.5
E(matea)fold percentage in mating type a8.51 99.5
E(mateal)fold percentage in mating type alpha10.41 99.5
E(gal)fold percentage in galactose8.11 99.5
E(heat)fold percentage in heat shock8.81 99.5
E(vegsam)fold percentage in wild type (J)6.51 99.5
E(vegyou)fold percentage in wild type (H)6.91 99.5
X(enz)total number of functions associated with the fold161 99.5
E(sage)fold percentage in SAGE12.91 99.4
G(mtub)fold occurrence in Bsub882 99.4
G(hinf)fold occurrence in Mtub772 99.4
G(hpyl)fold occurrence in Hinf352 99.4
G(tpal)fold occurrence in Bbur202 99.4
G(ctra)fold occurrence in Tpal142 99.4
G(cpne)fold occurrence in Ctra192 99.4
G(rpro)fold occurrence in Cpne192 99.4
I(pdball,inter)interaction on same chains [pdb]3572 99.4
I(pdbb,inter)interaction with beta proteins on same chains [pdb]1562 99.4
I(pdbab,inter)interaction with alpha-beta proteins on same chains [pdb]1812 99.4
I(pdball,intra)interaction types [pdb]7472 99.4
B(Trp,pdb40)interaction with beta proteins on same chains [pdb]91 99.3
B(Asp,pdb100)interaction with beta proteins [pdb]92 99.3
B(Ala,pdb40)number of enzymatic functions associated with the fold151 99.2
G(mjan)fold occurrence in Aful453 99.1
G(mthe)fold occurrence in Mjan373 99.1
G(phor)fold occurrence in Mthe433 99.1
G(scer)fold occurrence in Phor303 99.1
G(mgen)fold occurrence in Hpyl223 99.1
U(all)pair number22142 99.1
B(Thr,pdb100)interaction on different chains [pdb]3903 99.1
B(Ala,pdb100)interaction types [pdb]223 98.9
B(Glu,pdb100)interaction with alpha-beta proteins [pdb]123 98.9
G(syne)fold occurrence in Aaeo284 98.8
G(ecol)fold occurrence in Syne514 98.8
N(all)fold occurrence in Rpro94 98.8
B(Asn,pdb100)interaction with alpha-beta proteins on same chains [yeast]71 98.8
B(Thr,pdb40)interaction on same chains [pdb]192 98.6
B(Tyr,pdb40)interaction with alpha-beta proteins on same chains [pdb]92 98.6
G(bbur)fold occurrence in Mpne85 98.5
I(pdball,all)interaction on different chains [yeast]142 98.5
I(pdbab,all)interaction with alpha-beta proteins on different chains [yeast]142 98.5
I(scerall,inter)interaction on same chains [yeast]232 98.5
I(scerab,inter)interaction with alpha-beta proteins on same chains [yeast]212 98.5
I(scerall,intra)interaction types [yeast]372 98.5
I(scerab,intra)interaction with alpha-beta proteins [yeast]352 98.5
G(mpne)fold occurrence in Mgen76 98.2
J(pdbab,inter)maximal Ca atom displacement between structures[Max.]89.102 98.0
J(pdball,intra)overall RMS between structures [Max.]37.442 98.0
J(pdba,all)number of residues [Max.]10232 98.0
I(pdbb,intra)interaction with beta proteins [pdb]1597 97.8
I(pdba,inter)interaction on different chains [pdb]86 97.8
G(cele)fold occurrence in Scer848 97.6
B(Lys,pdb100)interaction on same chains [yeast]92 97.6
B(Pro,pdb100)interaction types [yeast]113 97.2
B(Ser,pdb100)interaction with alpha-beta proteins [yeast]93 97.2
J(pdba,intra)number of putative hinges found in fold [Max.]53 97.0
I(pdbb,all)interaction with beta proteins on different chains [yeast]04 97.0
I(pdba,inter)interaction with alpha proteins on same chains [pdb]2010 96.9
L(ref)fold percentage in reference genome3.67 96.7
B(Leu,pdb100)interaction with alpha proteins on same chains [yeast]13 96.5
J(pdbab,intra)energy difference between start and end states [Max.]2192076.004 96.0
G(aaeo)fold occurrence in Cele12316 95.3
J(pdball,inter)energy difference between start and end states [Ave.]373977.665 95.0
J(pdba,inter)maximum energy difference [Ave.]486132.305 95.0
J(pdball,all)maximum energy difference [Max.]2192076.005 95.0
C(sage)level SAGE17.712 94.4
J(pdbb,inter)number of residues [Ave.]559.806 94.1
B(Arg,pdb100)interaction with beta proteins [yeast]17 93.4
L(matea)fold enrichment in SAGE3.112 93.1
I(pdba,intra)interaction with alpha proteins [pdb]2022 93.1
B(Met,pdb100)interaction with beta proteins on same chains [yeast]16 92.9
B(Val,pdb40)interaction with alpha proteins on same chains [pdb]110 92.9
I(pdbab,inter)interaction with beta proteins on different chains [pdb]120 92.5
B(Gln,pdb100)interaction with alpha proteins [yeast]18 92.5
I(scerb,all)number of putative hinges found in fold [Ave.]2.708 92.1
J(scera,inter)sensitivity of transposon at condition 67Calc0.007 91.6
C(ref)level transcriptome12.319 91.2
L(vegsam)fold enrichment in reference transcriptome2.019 91.2
I(scera,inter)interaction with alpha proteins on same chains [yeast]112 90.9
I(pdba,all)interaction with alpha proteins on different chains [yeast]013 90.2
C(mateal)level mating type alpha1.322 89.8
B(Ile,pdb100)interaction with alpha-beta proteins on different chains [yeast]34 89.7
B(Cys,pdb100)interaction with alpha proteins [pdb]129 89.2
X(age)average length of fold33246 89.0
L(gal)fold enrichment in mating type a1.424 88.8
L(gal)fold enrichment in mating type alpha1.924 88.8
I(scera,intra)interaction with alpha proteins [yeast]115 88.6
J(scerall,inter)sensitivity of transposon at condition CyhR0.0010 88.0
I(scerb,inter)interaction with beta proteins on same chains [yeast]116 87.9
C(matea)level mating type a1.227 87.4
F(deve)fluctuation of expression levels in heat shock (E.coli)0.8324 87.3
B(Phe,pdb100)interaction on different chains [yeast]35 87.2
I(scerb,intra)interaction with beta proteins [yeast]117 87.1
B(Trp,pdb100)interaction with beta proteins on different chains [pdb]342 86.8
L(sage)fold enrichment in wild type (H)1.130 85.8
C(vegyou)level wild type (H)6.831 85.6
C(heat)level heat shock1.432 85.1
F(cdc28)fold enrichment in heat shock1.532 85.1
L(heat)fold enrichment in galactose1.333 84.7
C(gal)level galactose1.135 83.7
J(pdbb,all)sensitivity of transposon at condition 9NaCl0.3714 83.1
J(scerab,intra)sensitivity of transposon at condition 20Ben0.0014 83.1
B(His,pdb100)interaction with beta proteins on different chains [yeast]07 82.1
J(scerall,intra)sensitivity of transposon at condition 01MMS0.0015 81.9
L(vegyou)fold enrichment in wild type (J)0.839 81.7
C(vegsam)level wild type (J)5.540 81.4
F(spor)fluctuation of expression levels in diauxic shift0.2438 81.2
J(scera,intra)sensitivity of transposon at condition 2EGTA0.2416 80.7
I(scerall,all)maximal Ca atom displacement between structures[Ave.]52.6720 80.2
F(heatec)fluctuation of expression levels in sporulation0.4838 79.9
I(scera,all)overall RMS between structures [Ave.]20.5321 79.2
S(all)trimmed RMS2.3247 78.2
B(Gly,pdb100)composition percentage of Phe for pdb100d4.596 77.1
J(scerall,all)sensitivity of transposon at condition MethBl0.3319 77.1
B(Val,pdb100)interaction with alpha proteins on different chains [pdb]075 76.5
B(Ile,pdb100)composition percentage of His for pdb100d2.8103 75.5
B(Glu,pdb100)composition percentage of Asp for pdb100d6.6105 75.0
N(foldonly)P-value (seq.)9.20E-0155 74.5
F(alpha)fluctuation of expression levels in CDC150.2853 73.9
Q(all)P-value (str.)1.82E-0358 73.1
B(Ala,pdb100)composition percentage of Tyr for pdb40d4.1111 72.8
B(Pro,pdb40)composition percentage of Asn for pdb40d5.1112 72.5
B(Cys,pdb100)composition percentage of Ala for pdb100d10.0118 71.9
P(foldonly)seq. identity (DE)16.516 71.4
B(Gly,pdb40)composition percentage of Phe for pdb40d4.3117 71.3
I(pdbb,inter)interaction with alpha proteins on different chains [pdb]077 71.3
J(scerb,inter)sensitivity of transposon at condition YPD11C0.0024 71.1
A(deltae,auto)sensitivity of transposon at condition 8Caff0.1824 71.1
B(Tyr,pdb40)composition percentage of Trp for pdb40d1.7118 71.1
B(Glu,pdb40)composition percentage of Asp for pdb40d6.5120 70.6
F(diaux)fluctuation of expression levels in alpha0.3457 70.5
B(His,pdb100)composition percentage of Gly for pdb100d8.6126 70.0
J(scerab,inter)sensitivity of transposon at condition 75mMHU0.0025 69.9
J(pdbb,intra)degree of rotation angle about hinge [Max.]151.7131 69.3
A(kappa,auto)sensitivity of transposon at condition CyhS0.0026 68.7
B(Tyr,pdb100)composition percentage of Trp for pdb100d1.6133 68.3
J(pdbab,all)sensitivity of transposon at condition HHIG0.0027 67.5
J(scerb,intra)sensitivity of transposon at condition YPD37C0.0027 67.5
R(all)untrimmed RMS7.3173 66.2
S(foldonly)trimmed RMS (DE)2.3119 66.1
B(Ile,pdb40)composition percentage of His for pdb40d2.5149 63.5
B(Lys,pdb40)composition percentage of Ile for pdb40d5.8150 63.2
J(scera,all)sensitivity of transposon at condition BCIP0.2731 62.7
A(rmsoverall,auto)sensitivity of transposon at condition 12Calc0.3031 62.7
I(scerab,all)degree of rotation angle about hinge [Ave.]75.4938 62.4
R(foldonly)untrimmed RMS (DE)7.3422 60.7
A(nhinges,auto)sensitivity of transposon at condition YPGly0.0033 60.2
X(func)pseudogene complement of the ribbon worm328 60.0
B(Met,pdb100)composition percentage of Leu for pdb100d8.8169 59.8
B(Asn,pdb40)composition percentage of Met for pdb40d2.3168 58.8
X(size)fluctuation of expression levels in development (worm)1.0690 58.3
B(Pro,pdb100)composition percentage of Asn for pdb100d4.5177 57.9
B(Cys,pdb40)composition percentage of Ala for pdb40d8.7173 57.6
B(His,pdb40)composition percentage of Gly for pdb40d7.8175 57.1
B(Ser,pdb100)composition percentage of Arg for pdb100d5.1185 56.0
B(Asn,pdb100)composition percentage of Met for pdb100d2.1190 54.8
J(scerb,all)sensitivity of transposon at condition 10Ben0.0838 54.2
B(Gly,pdb100)interaction with alpha proteins on different chains [yeast]018 53.8
I(pdball,inter)composition percentage of Tyr for pdb100d3.3198 52.9
B(Thr,pdb40)composition percentage of Ser for pdb40d5.7193 52.7
B(Arg,pdb40)composition percentage of Gln for pdb40d3.7207 49.3
B(Gln,pdb40)composition percentage of Pro for pdb40d4.5208 49.0
B(Lys,pdb100)composition percentage of Ile for pdb100d5.2216 48.6
B(Ser,pdb40)composition percentage of Arg for pdb40d4.8211 48.3
B(Gln,pdb100)composition percentage of Pro for pdb100d4.4218 48.1
B(Asp,pdb40)composition percentage of Cys for pdb40d1.1214 47.5
B(Arg,pdb100)composition percentage of Gln for pdb100d3.6224 46.7
B(Met,pdb40)composition percentage of Leu for pdb40d8.1221 45.8
B(Asp,pdb100)composition percentage of Cys for pdb100d1.0229 45.5
B(Trp,pdb100)composition percentage of Val for pdb100d6.4232 44.8
B(Trp,pdb40)composition percentage of Val for pdb40d6.6227 44.4
B(Val,pdb100)composition percentage of Thr for pdb100d5.1237 43.6
B(Phe,pdb100)composition percentage of Glu for pdb100d6.3240 42.9
B(Val,pdb40)composition percentage of Thr for pdb40d5.0239 41.4
J(scerab,all)sensitivity of transposon at condition 003SDS0.2650 39.8
A(maxcadev,auto)sensitivity of transposon at condition 46Hygr0.2850 39.8
B(Phe,pdb40)composition percentage of Glu for pdb40d6.2251 38.5
B(Leu,pdb40)composition percentage of Lys for pdb40d5.4257 37.0
B(Thr,pdb100)composition percentage of Ser for pdb100d5.0266 36.7
B(Leu,pdb100)composition percentage of Lys for pdb100d5.2290 31.0
P(all)seq. identity18.62171 20.8
Q(foldonly)P-value (str. DE)1.95E-0847 16.1
C(refg)P-value (seq. DE)9.99E-0152 7.1
F(cdc15)fluctuation of expression levels in CDC280.1117 7.1
X(pseu)year of fold determined76403 4.0