YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Rank report of 1thg

The top-five ranked attributes
 G(hinf)
fold occurrence in Mtub
X(enz)
total number of functions associated with the fold
N(all)
fold occurrence in Rpro
B(Ala,pdb40)
number of enzymatic functions associated with the fold
G(mtub)
fold occurrence in Bsub
value7099833
rank32426
%99.199.198.898.498.2


The bottom-five ranked attributes
 B(Ser,pdb40)
composition percentage of Arg for pdb40d
B(Leu,pdb40)
composition percentage of Lys for pdb40d
B(Phe,pdb40)
composition percentage of Glu for pdb40d
B(Phe,pdb100)
composition percentage of Glu for pdb100d
B(Leu,pdb100)
composition percentage of Lys for pdb100d
value3.74.24.94.43.7
rank311324330360363
%23.820.619.114.313.6


All attributes
  valuerank%
G(hinf)fold occurrence in Mtub703 99.1
X(enz)total number of functions associated with the fold92 99.1
N(all)fold occurrence in Rpro94 98.8
B(Ala,pdb40)number of enzymatic functions associated with the fold82 98.4
G(mtub)fold occurrence in Bsub336 98.2
I(scerall,inter)interaction on same chains [yeast]203 97.7
G(ecol)fold occurrence in Syne249 97.4
G(mpne)fold occurrence in Mgen49 97.4
I(pdbb,all)interaction with beta proteins on different chains [yeast]04 97.0
I(scerab,inter)interaction with alpha-beta proteins on same chains [yeast]154 97.0
I(scerall,intra)interaction types [yeast]204 97.0
G(aaeo)fold occurrence in Cele17511 96.8
G(bbur)fold occurrence in Mpne411 96.8
G(cele)fold occurrence in Scer3812 96.5
I(scerab,intra)interaction with alpha-beta proteins [yeast]155 96.2
G(cpne)fold occurrence in Ctra513 96.2
B(Trp,pdb40)interaction with beta proteins on same chains [pdb]26 95.7
G(mjan)fold occurrence in Aful1316 95.3
G(bsub)fold occurrence in Ecol1918 94.7
L(ref)fold percentage in reference genome1.712 94.4
X(func)pseudogene complement of the ribbon worm404 94.3
I(pdba,inter)interaction on different chains [pdb]416 94.0
J(scera,inter)sensitivity of transposon at condition 67Calc0.255 94.0
U(all)pair number23114 93.5
B(Asp,pdb100)interaction with beta proteins [pdb]218 93.3
I(scerb,inter)interaction with beta proteins on same chains [yeast]39 93.2
I(scerb,intra)interaction with beta proteins [yeast]39 93.2
G(scer)fold occurrence in Phor524 92.9
I(pdbab,inter)interaction with beta proteins on different chains [pdb]120 92.5
G(rpro)fold occurrence in Cpne327 92.1
G(hpyl)fold occurrence in Hinf528 91.8
Q(all)P-value (str.)8.68E-0219 91.2
J(pdba,intra)number of putative hinges found in fold [Max.]39 91.1
I(scera,inter)interaction with alpha proteins on same chains [yeast]112 90.9
I(pdba,all)interaction with alpha proteins on different chains [yeast]013 90.2
G(tpal)fold occurrence in Bbur234 90.0
X(age)average length of fold33645 89.3
G(ctra)fold occurrence in Tpal238 88.8
B(Ala,pdb100)interaction types [pdb]530 88.8
I(scera,intra)interaction with alpha proteins [yeast]115 88.6
I(pdba,inter)interaction with alpha proteins on same chains [pdb]237 88.4
E(gal)fold percentage in galactose0.925 88.4
B(Gly,pdb100)composition percentage of Phe for pdb100d5.249 88.3
J(scerall,inter)sensitivity of transposon at condition CyhR0.0010 88.0
B(Tyr,pdb100)interaction with alpha-beta proteins on different chains [pdb]2039 87.8
E(heat)fold percentage in heat shock0.927 87.4
G(syne)fold occurrence in Aaeo343 87.4
J(pdbab,intra)energy difference between start and end states [Max.]309030.0014 86.1
E(matea)fold percentage in mating type a0.831 85.6
E(mateal)fold percentage in mating type alpha0.832 85.1
B(Ser,pdb40)interaction with alpha-beta proteins on different chains [pdb]140 85.1
G(phor)fold occurrence in Mthe252 84.7
B(Gly,pdb40)composition percentage of Phe for pdb40d5.064 84.3
J(pdba,all)number of residues [Max.]53416 84.2
E(vegsam)fold percentage in wild type (J)0.734 84.0
J(pdball,all)maximum energy difference [Max.]309030.0017 83.2
J(scerab,intra)sensitivity of transposon at condition 20Ben0.0014 83.1
S(all)trimmed RMS2.6938 82.4
J(pdball,inter)energy difference between start and end states [Ave.]107547.4418 82.2
J(pdbb,inter)number of residues [Ave.]416.1418 82.2
J(pdbb,intra)degree of rotation angle about hinge [Max.]172.7118 82.2
I(pdbb,inter)interaction with beta proteins on same chains [pdb]057 82.1
J(scerall,intra)sensitivity of transposon at condition 01MMS0.0015 81.9
E(ref)fold percentage in reference transcriptome0.540 81.4
E(sage)fold percentage in SAGE0.633 81.1
E(vegyou)fold percentage in wild type (H)0.640 81.1
J(scerall,all)sensitivity of transposon at condition MethBl0.4016 80.7
B(Ala,pdb100)composition percentage of Tyr for pdb40d4.479 80.6
B(Thr,pdb100)composition percentage of Ser for pdb100d7.482 80.5
B(Trp,pdb100)interaction with beta proteins on different chains [pdb]065 79.6
J(pdball,intra)overall RMS between structures [Max.]26.2422 78.2
I(pdbab,all)interaction with alpha-beta proteins on different chains [yeast]029 78.0
G(mthe)fold occurrence in Mjan176 77.6
B(Thr,pdb100)interaction on different chains [pdb]2072 77.4
B(Gln,pdb100)composition percentage of Pro for pdb100d5.995 77.4
F(deve)fluctuation of expression levels in heat shock (E.coli)0.643 77.2
J(pdbab,inter)maximal Ca atom displacement between structures[Max.]61.7623 77.2
I(pdba,intra)interaction with alpha proteins [pdb]273 77.1
I(pdbab,intra)interaction with alpha-beta proteins [pdb]2073 77.1
B(Thr,pdb40)composition percentage of Ser for pdb40d7.195 76.7
B(Val,pdb100)interaction with alpha proteins on different chains [pdb]075 76.5
G(mgen)fold occurrence in Hpyl180 76.5
B(Arg,pdb100)interaction with beta proteins [yeast]025 76.4
B(Val,pdb100)composition percentage of Thr for pdb100d6.5102 75.7
B(Gln,pdb40)composition percentage of Pro for pdb40d5.7100 75.5
B(Leu,pdb100)interaction with alpha proteins on same chains [yeast]021 75.3
B(Met,pdb100)interaction with beta proteins on same chains [yeast]021 75.3
B(Pro,pdb40)composition percentage of Asn for pdb40d5.2103 74.8
J(pdbb,all)sensitivity of transposon at condition 9NaCl0.0021 74.7
J(scera,intra)sensitivity of transposon at condition 2EGTA0.0021 74.7
R(all)untrimmed RMS855 74.5
U(foldonly)pair number (Domain exclusive)057 73.6
B(Glu,pdb100)interaction with alpha-beta proteins [pdb]171 73.5
B(Tyr,pdb40)composition percentage of Trp for pdb40d1.8109 73.3
I(scera,all)overall RMS between structures [Ave.]18.4627 73.3
I(scerab,all)degree of rotation angle about hinge [Ave.]103.0627 73.3
B(Thr,pdb40)interaction on same chains [pdb]239 72.3
I(pdball,all)interaction on different chains [yeast]037 72.0
B(Asn,pdb100)interaction with alpha-beta proteins on same chains [yeast]124 71.8
I(scerall,all)maximal Ca atom displacement between structures[Ave.]45.9729 71.3
I(pdbb,inter)interaction with alpha proteins on different chains [pdb]077 71.3
B(Tyr,pdb100)composition percentage of Trp for pdb100d1.7121 71.2
I(pdball,inter)composition percentage of Tyr for pdb100d4.0121 71.2
J(scerb,inter)sensitivity of transposon at condition YPD11C0.0024 71.1
I(pdbb,intra)interaction with beta proteins [pdb]093 70.8
B(Glu,pdb40)composition percentage of Asp for pdb40d6.5120 70.6
B(His,pdb100)composition percentage of Gly for pdb100d8.6126 70.0
B(Pro,pdb100)composition percentage of Asn for pdb100d5.0126 70.0
J(scerab,inter)sensitivity of transposon at condition 75mMHU0.0025 69.9
B(Ser,pdb100)interaction with alpha-beta proteins [yeast]132 69.8
X(size)fluctuation of expression levels in development (worm)1.1566 69.4
J(pdba,inter)maximum energy difference [Ave.]116424.3331 69.3
B(Val,pdb40)composition percentage of Thr for pdb40d6.1126 69.1
F(heatec)fluctuation of expression levels in sporulation0.3759 68.8
A(kappa,auto)sensitivity of transposon at condition CyhS0.0026 68.7
B(Gln,pdb100)interaction with alpha proteins [yeast]034 67.9
J(pdbab,all)sensitivity of transposon at condition HHIG0.0027 67.5
J(scerb,intra)sensitivity of transposon at condition YPD37C0.0027 67.5
A(deltae,auto)sensitivity of transposon at condition 8Caff0.0027 67.5
I(scerb,all)number of putative hinges found in fold [Ave.]1.8633 67.3
N(foldonly)P-value (seq.)8.41E-0172 66.7
B(His,pdb40)composition percentage of Gly for pdb40d8.2137 66.4
B(Met,pdb40)composition percentage of Leu for pdb40d9.1143 65.0
B(Glu,pdb100)composition percentage of Asp for pdb100d6.1152 63.8
I(pdball,intra)interaction types [pdb]22116 63.6
B(Cys,pdb100)interaction with alpha proteins [pdb]0100 62.7
B(Val,pdb40)interaction with alpha proteins on same chains [pdb]053 62.4
B(Asp,pdb40)composition percentage of Cys for pdb40d1.4156 61.8
B(Asp,pdb100)composition percentage of Cys for pdb100d1.4161 61.7
A(nhinges,auto)sensitivity of transposon at condition YPGly0.0033 60.2
B(Met,pdb100)composition percentage of Leu for pdb100d8.8169 59.8
B(Ile,pdb40)composition percentage of His for pdb40d2.3171 58.1
I(pdbab,inter)interaction with alpha-beta proteins on same chains [pdb]0137 57.1
C(matea)level mating type a0.394 56.3
J(scera,all)sensitivity of transposon at condition BCIP0.0037 55.4
B(Lys,pdb100)interaction on same chains [yeast]138 55.3
B(Pro,pdb100)interaction types [yeast]148 54.7
C(gal)level galactose0.399 54.0
B(Cys,pdb100)composition percentage of Ala for pdb100d8.5198 52.9
C(sage)level SAGE1.4102 52.6
F(cdc15)fluctuation of expression levels in CDC280.2360 52.4
J(scerb,all)sensitivity of transposon at condition 10Ben0.0040 51.8
L(heat)fold enrichment in galactose-0.4104 51.6
F(alpha)fluctuation of expression levels in CDC150.2499 51.2
B(Ile,pdb100)composition percentage of His for pdb100d2.1205 51.2
B(Trp,pdb100)composition percentage of Val for pdb100d6.7210 50.0
I(pdball,inter)interaction on same chains [pdb]2161 49.5
A(rmsoverall,auto)sensitivity of transposon at condition 12Calc0.0042 49.4
B(Arg,pdb100)composition percentage of Gln for pdb100d3.7215 48.8
C(mateal)level mating type alpha0.2112 47.9
L(gal)fold enrichment in mating type alpha-0.5113 47.4
C(heat)level heat shock0.3113 47.4
B(Arg,pdb40)composition percentage of Gln for pdb40d3.6218 46.6
B(Asn,pdb100)composition percentage of Met for pdb100d1.9226 46.2
B(Cys,pdb40)composition percentage of Ala for pdb40d7.9221 45.8
F(cdc28)fold enrichment in heat shock-0.5119 44.7
L(matea)fold enrichment in SAGE-0.798 44.0
B(Trp,pdb40)composition percentage of Val for pdb40d6.5233 42.9
A(maxcadev,auto)sensitivity of transposon at condition 46Hygr0.3149 41.0
L(gal)fold enrichment in mating type a-0.5128 40.5
B(Asn,pdb40)composition percentage of Met for pdb40d1.8248 39.2
P(all)seq. identity21.97132 38.9
C(vegsam)level wild type (J)1.3137 36.3
L(vegyou)fold enrichment in wild type (J)-0.6137 35.7
F(spor)fluctuation of expression levels in diauxic shift0.16132 34.7
J(scerab,all)sensitivity of transposon at condition 003SDS0.0055 33.7
B(Lys,pdb40)composition percentage of Ile for pdb40d4.6277 32.1
B(Tyr,pdb40)interaction with alpha-beta proteins on same chains [pdb]096 31.9
B(Lys,pdb100)composition percentage of Ile for pdb100d4.6286 31.9
L(vegsam)fold enrichment in reference transcriptome-0.7147 31.6
F(diaux)fluctuation of expression levels in alpha0.26135 30.1
B(Ser,pdb100)composition percentage of Arg for pdb100d3.8295 29.8
C(ref)level transcriptome1.2154 28.4
C(vegyou)level wild type (H)1.1155 27.9
X(pseu)year of fold determined90306 27.1
L(sage)fold enrichment in wild type (H)-0.7156 26.4
B(Ser,pdb40)composition percentage of Arg for pdb40d3.7311 23.8
B(Leu,pdb40)composition percentage of Lys for pdb40d4.2324 20.6
B(Phe,pdb40)composition percentage of Glu for pdb40d4.9330 19.1
B(Phe,pdb100)composition percentage of Glu for pdb100d4.4360 14.3
B(Leu,pdb100)composition percentage of Lys for pdb100d3.7363 13.6