YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Rank report of 1tde

The top-five ranked attributes
 J(pdba,intra)
number of putative hinges found in fold [Max.]
G(mjan)
fold occurrence in Aful
N(all)
fold occurrence in Rpro
G(syne)
fold occurrence in Aaeo
G(bbur)
fold occurrence in Mpne
value6349268
rank14455
%99.098.898.898.598.5


The bottom-five ranked attributes
 B(Gln,pdb100)
composition percentage of Pro for pdb100d
B(Arg,pdb40)
composition percentage of Gln for pdb40d
B(Thr,pdb100)
interaction on different chains [pdb]
B(Arg,pdb100)
composition percentage of Gln for pdb100d
X(pseu)
year of fold determined
value3.62.912.887
rank298290232308354
%29.028.927.326.715.7


All attributes
  valuerank%
J(pdba,intra)number of putative hinges found in fold [Max.]61 99.0
G(mjan)fold occurrence in Aful344 98.8
N(all)fold occurrence in Rpro94 98.8
G(syne)fold occurrence in Aaeo265 98.5
G(bbur)fold occurrence in Mpne85 98.5
B(Glu,pdb100)interaction with alpha-beta proteins [pdb]74 98.5
G(mpne)fold occurrence in Mgen76 98.2
I(scerb,all)number of putative hinges found in fold [Ave.]3.862 98.0
G(scer)fold occurrence in Phor187 97.9
G(bsub)fold occurrence in Ecol387 97.9
G(mtub)fold occurrence in Bsub318 97.6
G(ctra)fold occurrence in Tpal69 97.4
B(Tyr,pdb40)interaction with alpha-beta proteins on same chains [pdb]64 97.2
G(phor)fold occurrence in Mthe1310 97.1
G(hinf)fold occurrence in Mtub4210 97.1
G(ecol)fold occurrence in Syne2012 96.5
G(cpne)fold occurrence in Ctra513 96.2
J(pdbab,inter)maximal Ca atom displacement between structures[Max.]82.354 96.0
G(mthe)fold occurrence in Mjan914 95.9
G(mgen)fold occurrence in Hpyl614 95.9
G(hpyl)fold occurrence in Hinf1116 95.3
A(nhinges,auto)sensitivity of transposon at condition YPGly2.754 95.2
I(scerall,all)maximal Ca atom displacement between structures[Ave.]66.625 95.0
I(scera,all)overall RMS between structures [Ave.]28.115 95.0
G(tpal)fold occurrence in Bbur418 94.7
G(rpro)fold occurrence in Cpne419 94.4
B(Ser,pdb40)interaction with alpha-beta proteins on different chains [pdb]215 94.4
B(Ala,pdb100)interaction types [pdb]715 94.4
J(pdbb,inter)number of residues [Ave.]506.437 93.1
J(pdball,intra)overall RMS between structures [Max.]30.897 93.1
G(cele)fold occurrence in Scer2124 92.9
J(scerall,inter)sensitivity of transposon at condition CyhR0.516 92.8
B(Thr,pdb40)interaction on same chains [pdb]611 92.2
J(scera,inter)sensitivity of transposon at condition 67Calc0.007 91.6
I(pdbab,inter)interaction with alpha-beta proteins on same chains [pdb]3128 91.2
U(all)pair number15219 91.2
B(His,pdb40)composition percentage of Gly for pdb40d10.438 90.7
L(ref)fold percentage in reference genome0.921 90.2
I(scerab,all)degree of rotation angle about hinge [Ave.]150.2410 90.1
E(gal)fold percentage in galactose0.925 88.4
J(pdbb,intra)degree of rotation angle about hinge [Max.]174.3112 88.1
J(pdba,all)number of residues [Max.]66412 88.1
Q(all)P-value (str.)4.36E-0226 88.0
E(vegyou)fold percentage in wild type (H)1.026 87.7
S(all)trimmed RMS2.9327 87.5
I(pdball,inter)interaction on same chains [pdb]3140 87.5
B(Asn,pdb100)interaction with alpha-beta proteins on same chains [yeast]211 87.1
E(matea)fold percentage in mating type a0.928 87.0
E(mateal)fold percentage in mating type alpha0.928 87.0
E(heat)fold percentage in heat shock0.829 86.5
E(ref)fold percentage in reference transcriptome0.830 86.0
G(aaeo)fold occurrence in Cele2852 84.7
J(pdbab,intra)energy difference between start and end states [Max.]265478.0016 84.2
I(pdbab,intra)interaction with alpha-beta proteins [pdb]3251 84.0
E(sage)fold percentage in SAGE0.728 84.0
B(Ser,pdb100)interaction with alpha-beta proteins [yeast]217 84.0
I(pdba,inter)interaction on different chains [pdb]243 84.0
R(all)untrimmed RMS10.2636 83.3
J(pdball,inter)energy difference between start and end states [Ave.]131462.2317 83.2
J(scerab,intra)sensitivity of transposon at condition 20Ben0.0014 83.1
B(His,pdb100)composition percentage of Gly for pdb100d9.972 82.9
I(pdbb,inter)interaction with beta proteins on same chains [pdb]057 82.1
B(His,pdb100)interaction with beta proteins on different chains [yeast]07 82.1
J(pdbab,all)sensitivity of transposon at condition HHIG0.4815 81.9
J(scerall,intra)sensitivity of transposon at condition 01MMS0.0015 81.9
E(vegsam)fold percentage in wild type (J)0.640 81.2
I(pdba,inter)interaction with alpha proteins on same chains [pdb]060 81.2
J(pdba,inter)maximum energy difference [Ave.]174081.8019 81.2
J(pdball,all)maximum energy difference [Max.]265478.0019 81.2
B(Trp,pdb40)composition percentage of Val for pdb40d8.677 81.1
B(Trp,pdb100)interaction with beta proteins on different chains [pdb]065 79.6
B(Lys,pdb100)interaction on same chains [yeast]218 78.8
B(Trp,pdb100)composition percentage of Val for pdb100d8.393 77.9
F(cdc15)fluctuation of expression levels in CDC280.3129 77.0
B(Val,pdb100)interaction with alpha proteins on different chains [pdb]075 76.5
B(Arg,pdb100)interaction with beta proteins [yeast]025 76.4
B(Leu,pdb100)interaction with alpha proteins on same chains [yeast]021 75.3
B(Met,pdb100)interaction with beta proteins on same chains [yeast]021 75.3
J(pdbb,all)sensitivity of transposon at condition 9NaCl0.0021 74.7
J(scera,intra)sensitivity of transposon at condition 2EGTA0.0021 74.7
A(kappa,auto)sensitivity of transposon at condition CyhS0.2321 74.7
U(foldonly)pair number (Domain exclusive)057 73.6
B(Pro,pdb100)interaction types [yeast]228 73.6
F(heatec)fluctuation of expression levels in sporulation0.453 72.0
B(Ile,pdb100)interaction with alpha-beta proteins on different chains [yeast]111 71.8
I(pdball,intra)interaction types [pdb]3290 71.8
C(sage)level SAGE3.261 71.6
I(pdbb,inter)interaction with alpha proteins on different chains [pdb]077 71.3
C(mateal)level mating type alpha0.562 71.2
J(scerb,inter)sensitivity of transposon at condition YPD11C0.0024 71.1
I(pdbb,intra)interaction with beta proteins [pdb]093 70.8
I(pdbab,inter)interaction with beta proteins on different chains [pdb]080 70.1
J(scerab,inter)sensitivity of transposon at condition 75mMHU0.0025 69.9
J(scerall,all)sensitivity of transposon at condition MethBl0.0025 69.9
C(matea)level mating type a0.567 68.8
L(gal)fold enrichment in mating type a-0.067 68.8
F(alpha)fluctuation of expression levels in CDC150.2764 68.5
B(Cys,pdb100)composition percentage of Ala for pdb100d9.6134 68.1
X(size)fluctuation of expression levels in development (worm)1.1369 68.1
B(Gln,pdb100)interaction with alpha proteins [yeast]034 67.9
J(scerb,intra)sensitivity of transposon at condition YPD37C0.0027 67.5
A(deltae,auto)sensitivity of transposon at condition 8Caff0.0027 67.5
L(sage)fold enrichment in wild type (H)0.269 67.5
F(spor)fluctuation of expression levels in diauxic shift0.2166 67.3
I(pdba,intra)interaction with alpha proteins [pdb]0105 67.1
L(gal)fold enrichment in mating type alpha0.071 67.0
C(gal)level galactose0.573 66.0
B(Lys,pdb100)composition percentage of Ile for pdb100d6.0143 66.0
L(heat)fold enrichment in galactose0.074 65.6
B(Ile,pdb100)composition percentage of His for pdb100d2.5145 65.5
B(Trp,pdb40)interaction with beta proteins on same chains [pdb]049 65.2
L(matea)fold enrichment in SAGE-0.361 65.1
B(Asp,pdb100)interaction with beta proteins [pdb]094 64.9
B(Val,pdb40)composition percentage of Thr for pdb40d5.9144 64.7
X(age)average length of fold192152 63.8
C(vegyou)level wild type (H)3.878 63.7
B(Ser,pdb100)composition percentage of Arg for pdb100d5.5155 63.1
F(cdc28)fold enrichment in heat shock-0.180 62.8
B(Cys,pdb100)interaction with alpha proteins [pdb]0100 62.7
B(Val,pdb40)interaction with alpha proteins on same chains [pdb]053 62.4
C(heat)level heat shock0.581 62.3
B(Cys,pdb40)composition percentage of Ala for pdb40d9.0156 61.8
N(foldonly)P-value (seq.)7.70E-0183 61.6
L(vegsam)fold enrichment in reference transcriptome-0.285 60.5
F(diaux)fluctuation of expression levels in alpha0.3178 59.6
B(Tyr,pdb100)interaction with alpha-beta proteins on different chains [pdb]1129 59.6
C(ref)level transcriptome3.487 59.5
L(vegyou)fold enrichment in wild type (J)-0.287 59.2
J(scerb,all)sensitivity of transposon at condition 10Ben0.1934 59.0
B(Asn,pdb40)composition percentage of Met for pdb40d2.3168 58.8
B(Ala,pdb100)composition percentage of Tyr for pdb40d3.5168 58.8
B(Glu,pdb40)composition percentage of Asp for pdb40d6.0170 58.3
B(Phe,pdb100)composition percentage of Glu for pdb100d7.0176 58.1
B(Ile,pdb40)composition percentage of His for pdb40d2.3171 58.1
C(vegsam)level wild type (J)2.391 57.7
B(Val,pdb100)composition percentage of Thr for pdb100d5.7179 57.4
B(Met,pdb100)composition percentage of Leu for pdb100d8.7180 57.1
B(Lys,pdb40)composition percentage of Ile for pdb40d5.6175 57.1
B(Phe,pdb100)interaction on different chains [yeast]117 56.4
F(deve)fluctuation of expression levels in heat shock (E.coli)0.3684 55.6
J(scera,all)sensitivity of transposon at condition BCIP0.0037 55.4
B(Asn,pdb100)composition percentage of Met for pdb100d2.1190 54.8
B(Gly,pdb100)interaction with alpha proteins on different chains [yeast]018 53.8
B(Asp,pdb100)composition percentage of Cys for pdb100d1.2194 53.8
B(Glu,pdb100)composition percentage of Asp for pdb100d5.7197 53.1
I(pdball,inter)composition percentage of Tyr for pdb100d3.3198 52.9
B(Met,pdb40)composition percentage of Leu for pdb40d8.4205 49.8
A(rmsoverall,auto)sensitivity of transposon at condition 12Calc0.0042 49.4
B(Ser,pdb40)composition percentage of Arg for pdb40d4.8211 48.3
A(maxcadev,auto)sensitivity of transposon at condition 46Hygr0.3743 48.2
B(Asp,pdb40)composition percentage of Cys for pdb40d1.1214 47.5
B(Pro,pdb40)composition percentage of Asn for pdb40d3.9220 46.1
B(Phe,pdb40)composition percentage of Glu for pdb40d6.5231 43.4
B(Leu,pdb40)composition percentage of Lys for pdb40d5.7231 43.4
B(Thr,pdb40)composition percentage of Ser for pdb40d5.3234 42.6
B(Pro,pdb100)composition percentage of Asn for pdb100d3.8256 39.0
B(Tyr,pdb100)composition percentage of Trp for pdb100d0.9256 39.0
B(Thr,pdb100)composition percentage of Ser for pdb100d5.0266 36.7
B(Gln,pdb40)composition percentage of Pro for pdb40d4.0259 36.5
J(scerab,all)sensitivity of transposon at condition 003SDS0.1653 36.1
B(Tyr,pdb40)composition percentage of Trp for pdb40d0.9261 36.0
B(Leu,pdb100)composition percentage of Lys for pdb100d5.4274 34.8
X(func)pseudogene complement of the ribbon worm146 34.3
B(Gly,pdb100)composition percentage of Phe for pdb100d2.9277 34.0
B(Gly,pdb40)composition percentage of Phe for pdb40d3.0274 32.8
P(all)seq. identity20.47146 32.4
B(Gln,pdb100)composition percentage of Pro for pdb100d3.6298 29.0
B(Arg,pdb40)composition percentage of Gln for pdb40d2.9290 28.9
B(Thr,pdb100)interaction on different chains [pdb]1232 27.3
B(Arg,pdb100)composition percentage of Gln for pdb100d2.8308 26.7
X(pseu)year of fold determined87354 15.7