YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Rank report of 1tbp

The top-five ranked attributes
 C(refg)
P-value (seq. DE)
F(heatec)
fluctuation of expression levels in sporulation
B(Cys,pdb100)
interaction with alpha proteins [pdb]
B(Ser,pdb40)
interaction with alpha-beta proteins on different chains [pdb]
I(pdbb,inter)
interaction with alpha proteins on different chains [pdb]
value11.64221
rank14101516
%98.297.996.394.494.0


The bottom-five ranked attributes
 J(pdball,intra)
overall RMS between structures [Max.]
I(pdball,intra)
interaction types [pdb]
J(pdba,inter)
maximum energy difference [Ave.]
J(pdball,all)
maximum energy difference [Max.]
I(scera,all)
overall RMS between structures [Ave.]
value3.9111166.201356.853.12
rank95303969698
% 5.9 5.0 5.0 5.0 3.0


All attributes
  valuerank%
C(refg)P-value (seq. DE)11 98.2
F(heatec)fluctuation of expression levels in sporulation1.644 97.9
B(Cys,pdb100)interaction with alpha proteins [pdb]210 96.3
B(Ser,pdb40)interaction with alpha-beta proteins on different chains [pdb]215 94.4
I(pdbb,inter)interaction with alpha proteins on different chains [pdb]116 94.0
B(Val,pdb40)interaction with alpha proteins on same chains [pdb]110 92.9
B(Glu,pdb100)interaction with alpha-beta proteins [pdb]320 92.5
B(Gly,pdb100)composition percentage of Phe for pdb100d5.633 92.1
B(Ala,pdb100)interaction types [pdb]623 91.4
F(cdc15)fluctuation of expression levels in CDC280.511 91.3
B(Lys,pdb100)composition percentage of Ile for pdb100d7.739 90.7
I(pdba,inter)interaction on different chains [pdb]328 89.6
B(Lys,pdb40)composition percentage of Ile for pdb40d7.445 89.0
F(spor)fluctuation of expression levels in diauxic shift0.2826 87.1
B(Thr,pdb40)interaction on same chains [pdb]420 85.8
B(Tyr,pdb40)interaction with alpha-beta proteins on same chains [pdb]220 85.8
B(Asp,pdb100)interaction with beta proteins [pdb]139 85.4
G(scer)fold occurrence in Phor250 85.3
U(foldonly)pair number (Domain exclusive)433 84.7
G(phor)fold occurrence in Mthe252 84.7
F(diaux)fluctuation of expression levels in alpha0.3930 84.5
B(Gly,pdb40)composition percentage of Phe for pdb40d5.064 84.3
B(Trp,pdb40)interaction with beta proteins on same chains [pdb]123 83.7
G(mjan)fold occurrence in Aful260 82.4
I(pdbb,inter)interaction with beta proteins on same chains [pdb]057 82.1
I(pdba,inter)interaction with alpha proteins on same chains [pdb]060 81.2
B(Trp,pdb100)interaction with beta proteins on different chains [pdb]065 79.6
F(alpha)fluctuation of expression levels in CDC150.3143 78.8
X(func)pseudogene complement of the ribbon worm1215 78.6
B(Leu,pdb100)composition percentage of Lys for pdb100d8.291 78.3
G(mthe)fold occurrence in Mjan176 77.6
B(Val,pdb100)interaction with alpha proteins on different chains [pdb]075 76.5
G(mgen)fold occurrence in Hpyl180 76.5
B(Arg,pdb100)interaction with beta proteins [yeast]025 76.4
B(Leu,pdb100)interaction with alpha proteins on same chains [yeast]021 75.3
B(Met,pdb100)interaction with beta proteins on same chains [yeast]021 75.3
X(enz)total number of functions associated with the fold155 73.9
G(hinf)fold occurrence in Mtub292 72.9
B(Ala,pdb100)composition percentage of Tyr for pdb40d4.1111 72.8
G(mpne)fold occurrence in Mgen096 71.8
B(Asn,pdb100)interaction with alpha-beta proteins on same chains [yeast]124 71.8
I(pdbb,intra)interaction with beta proteins [pdb]093 70.8
I(pdbab,inter)interaction with beta proteins on different chains [pdb]080 70.1
G(bbur)fold occurrence in Mpne0102 70.0
B(Thr,pdb40)composition percentage of Ser for pdb40d6.7123 69.9
B(Ser,pdb100)interaction with alpha-beta proteins [yeast]132 69.8
B(Trp,pdb100)composition percentage of Val for pdb100d7.8127 69.8
G(cele)fold occurrence in Scer3104 69.4
B(Thr,pdb100)composition percentage of Ser for pdb100d6.7129 69.3
B(Leu,pdb40)composition percentage of Lys for pdb40d7.1128 68.6
B(Gln,pdb100)interaction with alpha proteins [yeast]034 67.9
I(pdba,intra)interaction with alpha proteins [pdb]0105 67.1
B(Ser,pdb100)composition percentage of Arg for pdb100d5.6144 65.7
B(Cys,pdb40)composition percentage of Ala for pdb40d9.2143 65.0
B(Trp,pdb40)composition percentage of Val for pdb40d7.4147 64.0
U(all)pair number1378 63.9
G(ctra)fold occurrence in Tpal0124 63.5
I(pdball,inter)composition percentage of Tyr for pdb100d3.7155 63.1
G(tpal)fold occurrence in Bbur0127 62.6
F(deve)fluctuation of expression levels in heat shock (E.coli)0.473 61.4
G(aaeo)fold occurrence in Cele4132 61.2
I(pdbab,inter)interaction with alpha-beta proteins on same chains [pdb]1124 61.1
P(all)seq. identity27.9984 61.1
G(cpne)fold occurrence in Ctra0135 60.3
N(all)fold occurrence in Rpro0136 60.0
G(rpro)fold occurrence in Cpne0137 59.7
B(Asn,pdb100)composition percentage of Met for pdb100d2.2176 58.1
B(Cys,pdb100)composition percentage of Ala for pdb100d8.7180 57.1
E(mateal)fold percentage in mating type alpha0.193 56.7
E(ref)fold percentage in reference transcriptome0.194 56.3
C(vegyou)level wild type (H)3.194 56.3
C(matea)level mating type a0.394 56.3
L(vegyou)fold enrichment in wild type (J)-0.394 55.9
C(ref)level transcriptome3.095 55.8
L(vegsam)fold enrichment in reference transcriptome-0.395 55.8
C(heat)level heat shock0.495 55.8
E(matea)fold percentage in mating type a0.196 55.3
B(Lys,pdb100)interaction on same chains [yeast]138 55.3
L(sage)fold enrichment in wild type (H)-0.195 55.2
B(Val,pdb40)composition percentage of Thr for pdb40d5.5183 55.1
B(Met,pdb100)composition percentage of Leu for pdb100d8.6189 55.0
B(Tyr,pdb100)interaction with alpha-beta proteins on different chains [pdb]0144 54.9
B(Pro,pdb100)interaction types [yeast]148 54.7
X(size)fluctuation of expression levels in development (worm)198 54.6
C(sage)level SAGE1.598 54.4
E(gal)fold percentage in galactose0.198 54.4
C(vegsam)level wild type (J)2.099 54.0
C(gal)level galactose0.399 54.0
E(heat)fold percentage in heat shock0.199 54.0
B(Ser,pdb40)composition percentage of Arg for pdb40d5.0189 53.7
G(bsub)fold occurrence in Ecol1158 53.5
E(vegsam)fold percentage in wild type (J)0.199 53.5
E(sage)fold percentage in SAGE0.182 53.1
B(Asn,pdb40)composition percentage of Met for pdb40d2.1195 52.2
G(syne)fold occurrence in Aaeo0163 52.1
L(ref)fold percentage in reference genome0.1104 51.6
L(heat)fold enrichment in galactose-0.4104 51.6
E(vegyou)fold percentage in wild type (H)0.1106 50.0
N(foldonly)P-value (seq.)6.15E-01109 49.5
F(cdc28)fold enrichment in heat shock-0.4109 49.3
L(gal)fold enrichment in mating type a-0.4112 47.9
C(mateal)level mating type alpha0.2112 47.9
B(Pro,pdb40)composition percentage of Asn for pdb40d4.0213 47.8
Q(all)P-value (str.)5.08E-07114 47.2
X(pseu)year of fold determined93223 46.9
B(Met,pdb40)composition percentage of Leu for pdb40d8.1221 45.8
B(Gln,pdb100)composition percentage of Pro for pdb100d4.3228 45.7
B(Asp,pdb100)composition percentage of Cys for pdb100d1.0229 45.5
B(His,pdb40)composition percentage of Gly for pdb40d7.1228 44.1
B(Gln,pdb40)composition percentage of Pro for pdb40d4.3228 44.1
L(matea)fold enrichment in SAGE-0.798 44.0
G(hpyl)fold occurrence in Hinf0191 43.8
I(pdball,inter)interaction on same chains [pdb]1181 43.3
P(foldonly)seq. identity (DE)15.4632 42.9
I(scerb,all)number of putative hinges found in fold [Ave.]1.0058 42.6
J(pdba,intra)number of putative hinges found in fold [Max.]159 41.6
G(ecol)fold occurrence in Syne0200 41.2
B(Phe,pdb40)composition percentage of Glu for pdb40d6.4241 40.9
B(Phe,pdb100)composition percentage of Glu for pdb100d6.1252 40.0
I(pdbab,intra)interaction with alpha-beta proteins [pdb]1192 39.8
L(gal)fold enrichment in mating type alpha-0.6131 39.1
G(mtub)fold occurrence in Bsub0209 38.5
R(all)untrimmed RMS4.81133 38.4
B(Arg,pdb100)composition percentage of Gln for pdb100d3.2265 36.9
B(Glu,pdb100)composition percentage of Asp for pdb100d5.0267 36.4
B(Pro,pdb100)composition percentage of Asn for pdb100d3.6279 33.6
X(age)average length of fold111281 33.1
B(Glu,pdb40)composition percentage of Asp for pdb40d5.0276 32.4
J(pdbb,inter)number of residues [Ave.]182.0069 31.7
B(Val,pdb100)composition percentage of Thr for pdb100d4.7287 31.7
B(His,pdb100)composition percentage of Gly for pdb100d6.2288 31.4
B(Asp,pdb40)composition percentage of Cys for pdb40d0.7285 30.1
S(all)trimmed RMS0.89151 30.1
B(Ile,pdb40)composition percentage of His for pdb40d1.6286 29.9
J(pdba,all)number of residues [Max.]18271 29.7
Q(foldonly)P-value (str. DE)1.01E-0641 26.8
B(Arg,pdb40)composition percentage of Gln for pdb40d2.8305 25.2
B(Thr,pdb100)interaction on different chains [pdb]0246 22.9
B(Tyr,pdb40)composition percentage of Trp for pdb40d0.5324 20.6
R(foldonly)untrimmed RMS (DE)4.9348 14.3
B(Ile,pdb100)composition percentage of His for pdb100d1.0362 13.8
B(Tyr,pdb100)composition percentage of Trp for pdb100d0.2363 13.6
J(pdbab,inter)maximal Ca atom displacement between structures[Max.]17.2691 9.9
J(pdbb,intra)degree of rotation angle about hinge [Max.]6.7791 9.9
S(foldonly)trimmed RMS (DE)1.4351 8.9
J(pdball,inter)energy difference between start and end states [Ave.]865.1293 7.9
J(pdbab,intra)energy difference between start and end states [Max.]1175.3693 7.9
I(scerall,all)maximal Ca atom displacement between structures[Ave.]12.3395 5.9
I(scerab,all)degree of rotation angle about hinge [Ave.]5.5595 5.9
J(pdball,intra)overall RMS between structures [Max.]3.9195 5.9
I(pdball,intra)interaction types [pdb]1303 5.0
J(pdba,inter)maximum energy difference [Ave.]1166.2096 5.0
J(pdball,all)maximum energy difference [Max.]1356.8596 5.0
I(scera,all)overall RMS between structures [Ave.]3.1298 3.0