YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Rank report of 1set

The top-five ranked attributes
 B(Ile,pdb100)
composition percentage of His for pdb100d
C(refg)
P-value (seq. DE)
G(mpne)
fold occurrence in Mgen
I(pdbb,all)
interaction with beta proteins on different chains [yeast]
G(bbur)
fold occurrence in Mpne
value6.51404
rank619411
%98.698.297.497.096.8


The bottom-five ranked attributes
 B(Thr,pdb100)
composition percentage of Ser for pdb100d
B(Val,pdb100)
composition percentage of Thr for pdb100d
B(Thr,pdb40)
composition percentage of Ser for pdb40d
S(foldonly)
trimmed RMS (DE)
B(Val,pdb40)
composition percentage of Thr for pdb40d
value3.43.52.81.372.6
rank37637637953393
%10.510.5 7.1 5.4 3.7


All attributes
  valuerank%
B(Ile,pdb100)composition percentage of His for pdb100d6.56 98.6
C(refg)P-value (seq. DE)11 98.2
G(mpne)fold occurrence in Mgen49 97.4
I(pdbb,all)interaction with beta proteins on different chains [yeast]04 97.0
G(bbur)fold occurrence in Mpne411 96.8
G(tpal)fold occurrence in Bbur513 96.2
X(size)fluctuation of expression levels in development (worm)3.810 95.4
B(Glu,pdb100)interaction with alpha-beta proteins [pdb]414 94.8
B(Ser,pdb40)interaction with alpha-beta proteins on different chains [pdb]215 94.4
I(pdbab,inter)interaction with alpha-beta proteins on same chains [pdb]5618 94.4
I(pdbab,intra)interaction with alpha-beta proteins [pdb]7119 94.0
G(mgen)fold occurrence in Hpyl521 93.8
B(Phe,pdb40)composition percentage of Glu for pdb40d11.226 93.6
N(all)fold occurrence in Rpro323 93.2
G(ctra)fold occurrence in Tpal324 92.9
P(foldonly)seq. identity (DE)17.654 92.9
G(cele)fold occurrence in Scer1926 92.4
I(pdball,inter)interaction on same chains [pdb]5925 92.2
G(cpne)fold occurrence in Ctra327 92.1
G(rpro)fold occurrence in Cpne327 92.1
G(hpyl)fold occurrence in Hinf528 91.8
J(scera,inter)sensitivity of transposon at condition 67Calc0.007 91.6
J(pdba,intra)number of putative hinges found in fold [Max.]39 91.1
B(Cys,pdb40)composition percentage of Ala for pdb40d12.537 90.9
B(Met,pdb100)composition percentage of Leu for pdb100d11.939 90.7
G(ecol)fold occurrence in Syne833 90.3
I(pdba,all)interaction with alpha proteins on different chains [yeast]013 90.2
E(vegsam)fold percentage in wild type (J)1.421 90.1
B(Tyr,pdb40)interaction with alpha-beta proteins on same chains [pdb]314 90.1
U(foldonly)pair number (Domain exclusive)1223 89.4
B(Ala,pdb100)interaction types [pdb]530 88.8
I(pdball,intra)interaction types [pdb]7438 88.1
J(scerall,inter)sensitivity of transposon at condition CyhR0.0010 88.0
L(ref)fold percentage in reference genome0.826 87.9
G(aaeo)fold occurrence in Cele3443 87.4
G(syne)fold occurrence in Aaeo343 87.4
I(pdbb,inter)interaction with beta proteins on same chains [pdb]341 87.1
B(Ile,pdb40)composition percentage of His for pdb40d3.553 87.0
B(Cys,pdb100)composition percentage of Ala for pdb100d11.458 86.2
I(scerb,all)number of putative hinges found in fold [Ave.]2.4014 86.1
B(Thr,pdb40)interaction on same chains [pdb]420 85.8
B(Tyr,pdb100)interaction with alpha-beta proteins on different chains [pdb]1546 85.6
J(pdbb,all)sensitivity of transposon at condition 9NaCl0.4512 85.5
B(Pro,pdb100)composition percentage of Asn for pdb100d6.061 85.5
B(Asp,pdb100)interaction with beta proteins [pdb]139 85.4
B(Phe,pdb100)composition percentage of Glu for pdb100d8.963 85.0
E(vegyou)fold percentage in wild type (H)0.832 84.9
G(phor)fold occurrence in Mthe252 84.7
G(bsub)fold occurrence in Ecol753 84.4
I(pdba,inter)interaction on different chains [pdb]243 84.0
E(ref)fold percentage in reference transcriptome0.635 83.7
E(gal)fold percentage in galactose0.635 83.7
B(Trp,pdb40)interaction with beta proteins on same chains [pdb]123 83.7
I(scerb,inter)interaction with beta proteins on same chains [yeast]022 83.3
J(scerab,intra)sensitivity of transposon at condition 20Ben0.0014 83.1
J(scerall,intra)sensitivity of transposon at condition 01MMS0.0015 81.9
I(scera,inter)interaction with alpha proteins on same chains [yeast]024 81.8
B(Leu,pdb40)composition percentage of Lys for pdb40d8.276 81.4
I(pdba,inter)interaction with alpha proteins on same chains [pdb]060 81.2
I(scerb,intra)interaction with beta proteins [yeast]025 81.1
E(matea)fold percentage in mating type a0.541 80.9
E(mateal)fold percentage in mating type alpha0.541 80.9
A(kappa,auto)sensitivity of transposon at condition CyhS0.3416 80.7
B(Gln,pdb100)composition percentage of Pro for pdb100d6.182 80.5
G(hinf)fold occurrence in Mtub468 80.0
C(vegsam)level wild type (J)5.143 80.0
E(heat)fold percentage in heat shock0.543 80.0
L(vegyou)fold enrichment in wild type (J)0.743 79.8
B(Trp,pdb100)interaction with beta proteins on different chains [pdb]065 79.6
I(pdbb,intra)interaction with beta proteins [pdb]366 79.3
G(mtub)fold occurrence in Bsub473 78.5
J(scerb,inter)sensitivity of transposon at condition YPD11C0.3418 78.3
J(scerb,all)sensitivity of transposon at condition 10Ben0.5718 78.3
I(pdbab,all)interaction with alpha-beta proteins on different chains [yeast]029 78.0
B(Val,pdb100)interaction with alpha proteins on different chains [pdb]075 76.5
B(Arg,pdb100)interaction with beta proteins [yeast]025 76.4
U(all)pair number3453 75.5
E(sage)fold percentage in SAGE0.443 75.4
B(Leu,pdb100)interaction with alpha proteins on same chains [yeast]021 75.3
B(Met,pdb100)interaction with beta proteins on same chains [yeast]021 75.3
J(scera,intra)sensitivity of transposon at condition 2EGTA0.0021 74.7
I(pdball,inter)composition percentage of Tyr for pdb100d4.1107 74.5
I(scera,intra)interaction with alpha proteins [yeast]034 74.2
F(diaux)fluctuation of expression levels in alpha0.3550 74.1
X(enz)total number of functions associated with the fold155 73.9
J(pdball,all)maximum energy difference [Max.]211826.6027 73.3
A(deltae,auto)sensitivity of transposon at condition 8Caff0.2323 72.3
B(Thr,pdb100)interaction on different chains [pdb]1589 72.1
I(pdball,all)interaction on different chains [yeast]037 72.0
B(Ser,pdb40)composition percentage of Arg for pdb40d6.0115 71.8
B(Asn,pdb100)interaction with alpha-beta proteins on same chains [yeast]124 71.8
I(pdbb,inter)interaction with alpha proteins on different chains [pdb]077 71.3
P(all)seq. identity34.5964 70.4
I(pdbab,inter)interaction with beta proteins on different chains [pdb]080 70.1
J(scerab,inter)sensitivity of transposon at condition 75mMHU0.0025 69.9
J(scerall,all)sensitivity of transposon at condition MethBl0.0025 69.9
A(maxcadev,auto)sensitivity of transposon at condition 46Hygr0.7625 69.9
B(Ser,pdb100)interaction with alpha-beta proteins [yeast]132 69.8
B(Met,pdb40)composition percentage of Leu for pdb40d9.3127 68.9
B(Ala,pdb100)composition percentage of Tyr for pdb40d3.9129 68.4
B(Gln,pdb100)interaction with alpha proteins [yeast]034 67.9
J(pdbab,all)sensitivity of transposon at condition HHIG0.0027 67.5
J(scerb,intra)sensitivity of transposon at condition YPD37C0.0027 67.5
I(pdba,intra)interaction with alpha proteins [pdb]0105 67.1
A(nhinges,auto)sensitivity of transposon at condition YPGly0.2528 66.3
B(Leu,pdb100)composition percentage of Lys for pdb100d7.2144 65.7
Q(all)P-value (str.)1.75E-0475 65.3
Q(foldonly)P-value (str. DE)4.90E-0420 64.3
C(sage)level SAGE2.177 64.2
G(scer)fold occurrence in Phor0122 64.1
B(Cys,pdb100)interaction with alpha proteins [pdb]0100 62.7
B(Val,pdb40)interaction with alpha proteins on same chains [pdb]053 62.4
C(gal)level galactose0.481 62.3
G(mthe)fold occurrence in Mjan0129 62.1
B(Tyr,pdb100)composition percentage of Trp for pdb100d1.4164 61.0
L(vegsam)fold enrichment in reference transcriptome-0.285 60.5
C(mateal)level mating type alpha0.385 60.5
C(vegyou)level wild type (H)3.387 59.5
J(scera,all)sensitivity of transposon at condition BCIP0.1834 59.0
L(sage)fold enrichment in wild type (H)0.087 59.0
B(His,pdb40)composition percentage of Gly for pdb40d7.8175 57.1
C(ref)level transcriptome3.193 56.7
A(rmsoverall,auto)sensitivity of transposon at condition 12Calc0.2236 56.6
L(matea)fold enrichment in SAGE-0.576 56.6
G(mjan)fold occurrence in Aful0148 56.5
C(matea)level mating type a0.394 56.3
B(Gly,pdb40)composition percentage of Phe for pdb40d3.7179 56.1
L(heat)fold enrichment in galactose-0.395 55.8
C(heat)level heat shock0.495 55.8
J(scerab,all)sensitivity of transposon at condition 003SDS0.5437 55.4
F(cdc28)fold enrichment in heat shock-0.396 55.3
B(Lys,pdb100)interaction on same chains [yeast]138 55.3
B(Pro,pdb100)interaction types [yeast]148 54.7
L(gal)fold enrichment in mating type alpha-0.498 54.4
I(scerab,inter)interaction with alpha-beta proteins on same chains [yeast]161 53.8
R(foldonly)untrimmed RMS (DE)6.7926 53.6
R(all)untrimmed RMS5.77106 50.9
B(Arg,pdb40)composition percentage of Gln for pdb40d3.7207 49.3
B(Arg,pdb100)composition percentage of Gln for pdb100d3.7215 48.8
L(gal)fold enrichment in mating type a-0.4112 47.9
F(deve)fluctuation of expression levels in heat shock (E.coli)0.33101 46.6
I(scerab,intra)interaction with alpha-beta proteins [yeast]172 45.5
B(Gln,pdb40)composition percentage of Pro for pdb40d4.3228 44.1
F(spor)fluctuation of expression levels in diauxic shift0.17113 44.1
J(pdba,inter)maximum energy difference [Ave.]47917.3559 41.6
F(alpha)fluctuation of expression levels in CDC150.22122 39.9
N(foldonly)P-value (seq.)3.52E-01130 39.8
I(scerall,inter)interaction on same chains [yeast]182 37.9
J(pdbb,inter)number of residues [Ave.]202.4063 37.6
B(Glu,pdb40)composition percentage of Asp for pdb40d5.2258 36.8
B(Lys,pdb40)composition percentage of Ile for pdb40d4.8259 36.5
B(Tyr,pdb40)composition percentage of Trp for pdb40d0.9261 36.0
F(heatec)fluctuation of expression levels in sporulation0.26124 34.4
X(func)pseudogene complement of the ribbon worm146 34.3
I(scerall,all)maximal Ca atom displacement between structures[Ave.]24.9867 33.7
J(pdba,all)number of residues [Max.]20567 33.7
X(pseu)year of fold determined91285 32.1
J(pdbab,intra)energy difference between start and end states [Max.]15995.9069 31.7
B(Pro,pdb40)composition percentage of Asn for pdb40d3.5279 31.6
S(all)trimmed RMS0.9148 31.5
J(pdbab,inter)maximal Ca atom displacement between structures[Max.]26.6070 30.7
B(Gly,pdb100)composition percentage of Phe for pdb100d2.7302 28.1
I(scerall,intra)interaction types [yeast]195 28.0
J(pdball,inter)energy difference between start and end states [Ave.]7162.4376 24.8
B(Asn,pdb40)composition percentage of Met for pdb40d1.3311 23.8
I(scera,all)overall RMS between structures [Ave.]5.3577 23.8
B(Lys,pdb100)composition percentage of Ile for pdb100d4.1321 23.6
X(age)average length of fold87324 22.9
I(scerab,all)degree of rotation angle about hinge [Ave.]10.1279 21.8
J(pdball,intra)overall RMS between structures [Max.]5.5979 21.8
B(His,pdb100)composition percentage of Gly for pdb100d5.5338 19.5
B(Ser,pdb100)composition percentage of Arg for pdb100d3.4339 19.3
B(Asp,pdb40)composition percentage of Cys for pdb40d0.4330 19.1
J(pdbb,intra)degree of rotation angle about hinge [Max.]11.7082 18.8
B(Asn,pdb100)composition percentage of Met for pdb100d1.0346 17.6
B(Glu,pdb100)composition percentage of Asp for pdb100d4.1348 17.1
B(Trp,pdb100)composition percentage of Val for pdb100d4.6358 14.8
B(Asp,pdb100)composition percentage of Cys for pdb100d0.2360 14.3
B(Trp,pdb40)composition percentage of Val for pdb40d4.5354 13.2
F(cdc15)fluctuation of expression levels in CDC280.12111 11.9
B(Thr,pdb100)composition percentage of Ser for pdb100d3.4376 10.5
B(Val,pdb100)composition percentage of Thr for pdb100d3.5376 10.5
B(Thr,pdb40)composition percentage of Ser for pdb40d2.8379 7.1
S(foldonly)trimmed RMS (DE)1.3753 5.4
B(Val,pdb40)composition percentage of Thr for pdb40d2.6393 3.7