YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Rank report of 1gdh

The top-five ranked attributes
 G(ecol)
fold occurrence in Syne
G(mtub)
fold occurrence in Bsub
G(mjan)
fold occurrence in Aful
G(phor)
fold occurrence in Mthe
G(bsub)
fold occurrence in Ecol
value7455322467
rank14555
%99.798.898.598.598.5


The bottom-five ranked attributes
 P(all)
seq. identity
R(foldonly)
untrimmed RMS (DE)
F(cdc15)
fluctuation of expression levels in CDC28
B(Ile,pdb100)
composition percentage of His for pdb100d
X(pseu)
year of fold determined
value18.854.830.120.883
rank16449111373377
%24.112.511.911.210.2


All attributes
  valuerank%
G(ecol)fold occurrence in Syne741 99.7
G(mtub)fold occurrence in Bsub554 98.8
G(mjan)fold occurrence in Aful325 98.5
G(phor)fold occurrence in Mthe245 98.5
G(bsub)fold occurrence in Ecol675 98.5
C(refg)P-value (seq. DE)11 98.2
U(foldonly)pair number (Domain exclusive)3034 98.1
G(hpyl)fold occurrence in Hinf177 97.9
G(mgen)fold occurrence in Hpyl147 97.9
G(tpal)fold occurrence in Bbur79 97.4
G(scer)fold occurrence in Phor1510 97.1
G(mthe)fold occurrence in Mjan1111 96.8
U(all)pair number3697 96.8
X(enz)total number of functions associated with the fold47 96.7
G(syne)fold occurrence in Aaeo1312 96.5
G(ctra)fold occurrence in Tpal512 96.5
N(all)fold occurrence in Rpro712 96.5
J(pdball,intra)overall RMS between structures [Max.]33.745 95.0
G(hinf)fold occurrence in Mtub2518 94.7
G(rpro)fold occurrence in Cpne419 94.4
B(Ala,pdb40)number of enzymatic functions associated with the fold38 93.5
J(scerab,all)sensitivity of transposon at condition 003SDS1.566 92.8
G(bbur)fold occurrence in Mpne225 92.6
G(cele)fold occurrence in Scer1926 92.4
G(cpne)fold occurrence in Ctra327 92.1
J(scera,inter)sensitivity of transposon at condition 67Calc0.007 91.6
J(scerab,intra)sensitivity of transposon at condition 20Ben0.897 91.6
J(pdba,intra)number of putative hinges found in fold [Max.]39 91.1
J(scerall,inter)sensitivity of transposon at condition CyhR0.388 90.4
J(pdbab,inter)maximal Ca atom displacement between structures[Max.]68.8811 89.1
J(pdbab,intra)energy difference between start and end states [Max.]434270.4011 89.1
J(pdba,all)number of residues [Max.]67611 89.1
G(mpne)fold occurrence in Mgen139 88.5
J(pdball,all)maximum energy difference [Max.]445479.5012 88.1
B(Glu,pdb40)composition percentage of Asp for pdb40d7.649 88.0
L(ref)fold percentage in reference genome0.826 87.9
J(pdbb,intra)degree of rotation angle about hinge [Max.]174.2413 87.1
X(size)fluctuation of expression levels in development (worm)1.6929 86.6
B(Cys,pdb100)composition percentage of Ala for pdb100d11.364 84.8
A(kappa,auto)sensitivity of transposon at condition CyhS0.6013 84.3
E(heat)fold percentage in heat shock0.636 83.3
F(spor)fluctuation of expression levels in diauxic shift0.2634 83.2
B(Glu,pdb100)composition percentage of Asp for pdb100d7.174 82.4
B(His,pdb100)composition percentage of Gly for pdb100d9.875 82.1
I(pdbb,inter)interaction with beta proteins on same chains [pdb]057 82.1
J(scerall,intra)sensitivity of transposon at condition 01MMS0.0015 81.9
J(scera,intra)sensitivity of transposon at condition 2EGTA0.2615 81.9
E(gal)fold percentage in galactose0.539 81.9
I(pdba,inter)interaction with alpha proteins on same chains [pdb]060 81.2
E(matea)fold percentage in mating type a0.541 80.9
E(sage)fold percentage in SAGE0.535 80.0
F(heatec)fluctuation of expression levels in sporulation0.4838 79.9
B(Trp,pdb100)interaction with beta proteins on different chains [pdb]065 79.6
J(scerall,all)sensitivity of transposon at condition MethBl0.3817 79.5
B(Lys,pdb40)composition percentage of Ile for pdb40d6.590 77.9
B(Lys,pdb100)composition percentage of Ile for pdb100d6.693 77.9
E(mateal)fold percentage in mating type alpha0.448 77.7
P(foldonly)seq. identity (DE)16.713 76.8
B(Val,pdb100)interaction with alpha proteins on different chains [pdb]075 76.5
G(aaeo)fold occurrence in Cele1481 76.2
J(scerb,inter)sensitivity of transposon at condition YPD11C0.3020 75.9
J(scerab,inter)sensitivity of transposon at condition 75mMHU0.2620 75.9
E(vegyou)fold percentage in wild type (H)0.452 75.5
E(ref)fold percentage in reference transcriptome0.354 74.9
J(pdbb,all)sensitivity of transposon at condition 9NaCl0.0021 74.7
B(His,pdb40)composition percentage of Gly for pdb40d8.8106 74.0
B(Cys,pdb40)composition percentage of Ala for pdb40d10.2107 73.8
E(vegsam)fold percentage in wild type (J)0.356 73.7
B(Tyr,pdb100)interaction with alpha-beta proteins on different chains [pdb]485 73.4
I(pdbb,intra)interaction with beta proteins [pdb]093 70.8
Q(all)P-value (str.)1.10E-0364 70.4
J(pdball,inter)energy difference between start and end states [Ave.]65437.9130 70.3
N(foldonly)P-value (seq.)8.78E-0166 69.4
B(Met,pdb100)composition percentage of Leu for pdb100d9.3133 68.3
J(pdbb,inter)number of residues [Ave.]351.1832 68.3
J(pdbab,all)sensitivity of transposon at condition HHIG0.0027 67.5
J(scerb,intra)sensitivity of transposon at condition YPD37C0.0027 67.5
A(deltae,auto)sensitivity of transposon at condition 8Caff0.0027 67.5
F(deve)fluctuation of expression levels in heat shock (E.coli)0.4662 67.2
I(pdba,intra)interaction with alpha proteins [pdb]0105 67.1
B(Trp,pdb40)composition percentage of Val for pdb40d7.5140 65.7
B(Met,pdb40)composition percentage of Leu for pdb40d9.1143 65.0
C(sage)level SAGE2.476 64.7
F(alpha)fluctuation of expression levels in CDC150.2674 63.5
J(pdba,inter)maximum energy difference [Ave.]93019.8838 62.4
B(Asp,pdb100)composition percentage of Cys for pdb100d1.4161 61.7
S(all)trimmed RMS1.7383 61.6
I(scerall,all)maximal Ca atom displacement between structures[Ave.]40.4339 61.4
I(scerb,all)number of putative hinges found in fold [Ave.]1.5540 60.4
J(scerb,all)sensitivity of transposon at condition 10Ben0.2133 60.2
A(nhinges,auto)sensitivity of transposon at condition YPGly0.0033 60.2
F(diaux)fluctuation of expression levels in alpha0.3178 59.6
B(Asn,pdb40)composition percentage of Met for pdb40d2.3168 58.8
F(cdc28)fold enrichment in heat shock-0.290 58.1
I(pdbab,inter)interaction with alpha-beta proteins on same chains [pdb]0137 57.1
L(matea)fold enrichment in SAGE-0.576 56.6
I(scera,all)overall RMS between structures [Ave.]14.3644 56.4
C(matea)level mating type a0.394 56.3
X(age)average length of fold161185 56.0
C(heat)level heat shock0.495 55.8
J(scera,all)sensitivity of transposon at condition BCIP0.0037 55.4
B(Leu,pdb40)composition percentage of Lys for pdb40d6.2185 54.7
I(pdbab,intra)interaction with alpha-beta proteins [pdb]4145 54.5
B(Val,pdb100)composition percentage of Thr for pdb100d5.5193 54.0
C(gal)level galactose0.399 54.0
B(Phe,pdb40)composition percentage of Glu for pdb40d7.0189 53.7
B(Phe,pdb100)composition percentage of Glu for pdb100d6.8197 53.1
B(Pro,pdb100)composition percentage of Asn for pdb100d4.3201 52.1
B(Gly,pdb100)composition percentage of Phe for pdb100d3.5203 51.7
L(heat)fold enrichment in galactose-0.4104 51.6
B(Asn,pdb100)composition percentage of Met for pdb100d2.0206 51.0
A(rmsoverall,auto)sensitivity of transposon at condition 12Calc0.0042 49.4
B(Gly,pdb40)composition percentage of Phe for pdb40d3.5209 48.8
I(scerab,all)degree of rotation angle about hinge [Ave.]45.6352 48.5
B(Thr,pdb100)interaction on different chains [pdb]4166 48.0
L(gal)fold enrichment in mating type a-0.4112 47.9
C(mateal)level mating type alpha0.2112 47.9
L(gal)fold enrichment in mating type alpha-0.5113 47.4
B(Ser,pdb100)composition percentage of Arg for pdb100d4.6222 47.1
B(Val,pdb40)composition percentage of Thr for pdb40d5.1225 44.9
Q(foldonly)P-value (str. DE)6.90E-0531 44.6
B(Arg,pdb40)composition percentage of Gln for pdb40d3.5229 43.9
B(Asp,pdb40)composition percentage of Cys for pdb40d1.0230 43.6
B(Trp,pdb100)composition percentage of Val for pdb100d6.3243 42.1
B(Thr,pdb100)composition percentage of Ser for pdb100d5.1255 39.3
B(Tyr,pdb100)composition percentage of Trp for pdb100d0.9256 39.0
L(vegsam)fold enrichment in reference transcriptome-0.6133 38.1
B(Gln,pdb100)composition percentage of Pro for pdb100d4.0261 37.9
L(sage)fold enrichment in wild type (H)-0.5132 37.7
C(ref)level transcriptome1.6136 36.7
I(pdball,inter)interaction on same chains [pdb]0202 36.7
R(all)untrimmed RMS4.75137 36.6
B(Gln,pdb40)composition percentage of Pro for pdb40d4.0259 36.5
B(Tyr,pdb40)composition percentage of Trp for pdb40d0.9261 36.0
B(Ser,pdb40)composition percentage of Arg for pdb40d4.2263 35.5
B(Leu,pdb100)composition percentage of Lys for pdb100d5.4274 34.8
C(vegyou)level wild type (H)1.5142 34.0
B(Ile,pdb40)composition percentage of His for pdb40d1.7274 32.8
A(maxcadev,auto)sensitivity of transposon at condition 46Hygr0.1456 32.5
S(foldonly)trimmed RMS (DE)1.8338 32.1
B(Ala,pdb100)composition percentage of Tyr for pdb40d2.6277 32.1
I(pdball,inter)composition percentage of Tyr for pdb100d2.6286 31.9
C(vegsam)level wild type (J)1.0149 30.7
L(vegyou)fold enrichment in wild type (J)-0.7149 30.0
B(Pro,pdb40)composition percentage of Asn for pdb40d3.4292 28.4
B(Arg,pdb100)composition percentage of Gln for pdb100d2.9301 28.3
B(Thr,pdb40)composition percentage of Ser for pdb40d4.7294 27.9
I(pdball,intra)interaction types [pdb]4240 24.8
P(all)seq. identity18.85164 24.1
R(foldonly)untrimmed RMS (DE)4.8349 12.5
F(cdc15)fluctuation of expression levels in CDC280.12111 11.9
B(Ile,pdb100)composition percentage of His for pdb100d0.8373 11.2
X(pseu)year of fold determined83377 10.2