YaleGerstein Lab Parts ListGeneCensusMolecular MovementsNESG helpdownload

Correlator

Please select the fold quantities to correlate:
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Fold occurrence in various organisms
Aful Mjan Mthe Phor Scer Cele Aaeo Syne Ecol Bsub Mtub Hinf Hpyl Mgen Mpne Bbur Tpal Ctra Cpne Rpro

Alignment quantities for different folds
Number of pairs Untrimmed RMS Trimmed RMS Seq. identity P-value (str.) P-value (seq.) Number of pairs (Domain exclusive) Untrimmed RMS (DE) Trimmed RMS (DE) Seq. identity (DE) P-value (str.) (DE) P-value (seq.) (DE)

Absolute expression levels for Yeast
(%: fold percetage; enrich: fold enrichment in transcriptome to genome)
Ref. genome Ref. transcriptome wild type (J) wild type (H) SAGE mating type a mating type alpha galactose heat shock
% level % enrich level % enrich level % enrich level % enrich level % enrich level % enrich level % enrich level % enrich

Fluctuation of expression levels in microarray experiments
CDC28 CDC15 Alpha Diauxic shift Sporulation heat shock (E. coli) development (worm)

Miscellaneous
size of fold age of fold pseudogene in worm total number of functions number of enzymatic functions

Amino acid composition percentage for those structures with 40% similarity within the fold
Ala Cys Asp Glu Phe Gly His Ile Lys Leu Met Asn Pro Gln Arg Ser Thr Val Trp Tyr
Amino acid composition percentage for all structures within the fold
Ala Cys Asp Glu Phe Gly His Ile Lys Leu Met Asn Pro Gln Arg Ser Thr Val Trp Tyr

number of distinct interaction type between or (/and) within folds
all inter alpha inter beta inter alpha+beta inter all intra alpha intra beta intra alpha+beta intra all union alpha union beta union alpha+beta union
For PDB
For yeast

number of individual interaction between or (/and) within folds
all inter alpha inter beta inter alpha+beta inter all intra alpha intra beta intra alpha+beta intra all union alpha union beta union alpha+beta union
For PDB
For yeast

Statistics of molecular motions[auto]
maximal Ca displacement overall RMS number of hinges rotation angle about hinge energy difference between "starting" and "ending" energy difference between maximum and minimum number of residues
Average within fold
Max within fold

Statistics of molecular motions[gold standard]
maximal Ca displacement overall RMS number of hinges rotation angle about hinge energy difference between "starting" and "ending" energy difference between maximum and minimum number of residues
Average within fold
Max within fold

Sensitivity of transposon at various conditions
NaCl HHIG CyhR Calcr YPD11 HU MMS EGTA YPD37 Benr MB BCIP Bens SDS Hug Calcs YPG Cyss Caff

Use SCOP as level of structural similarity