Ranking Comparer

select quantities to compare:
Beginner's form
Intermediate form

G(aful) fold occurrence in Aful
G(mjan) fold occurrence in Mjan
G(mthe) fold occurrence in Mthe
G(phor) fold occurrence in Phor
G(scer) fold occurrence in Scer
G(cele) fold occurrence in Cele
G(aaeo) fold occurrence in Aaeo
G(syne) fold occurrence in Syne
G(ecol) fold occurrence in Ecol
G(bsub) fold occurrence in Bsub
G(mtub) fold occurrence in Mtub
G(hinf) fold occurrence in Hinf
G(hpyl) fold occurrence in Hpyl
G(mgen) fold occurrence in Mgen
G(mpne) fold occurrence in Mpne
G(bbur) fold occurrence in Bbur
G(tpal) fold occurrence in Tpal
G(ctra) fold occurrence in Ctra
G(cpne) fold occurrence in Cpne
G(rpro) fold occurrence in Rpro
N(all) pair number
U(all) untrimmed RMS
R(all) trimmed RMS
S(all) seq. identity
P(all) P-value (str.)
Q(all) P-value (seq.)
N(foldonly) pair number (Domain exclusive)
U(foldonly) untrimmed RMS (DE)
R(foldonly) trimmed RMS (DE)
S(foldonly) seq. identity (DE)
P(foldonly) P-value (str. DE)
Q(foldonly) P-value (seq. DE)
C(refg) fold percentage in reference genome
L(ref) level transcriptome
C(ref) fold percentage in reference transcriptome
E(ref) fold enrichment in reference transcriptome
L(vegsam) level wild type (J)
C(vegsam) fold percentage in wild type (J)
E(vegsam) fold enrichment in wild type (J)
L(vegyou) level wild type (H)
C(vegyou) fold percentage in wild type (H)
E(vegyou) fold enrichment in wild type (H)
L(sage) level SAGE
C(sage) fold percentage in SAGE
E(sage) fold enrichment in SAGE
L(matea) level mating type a
C(matea) fold percentage in mating type a
E(matea) fold enrichment in mating type a
L(gal) level mating type alpha
C(mateal) fold percentage in mating type alpha
E(mateal) fold enrichment in mating type alpha
L(gal) level galactose
C(gal) fold percentage in galactose
E(gal) fold enrichment in galactose
L(heat) level heat shock
C(heat) fold percentage in heat shock
E(heat) fold enrichment in heat shock
F(cdc28) fluctuation of expression levels in CDC28
F(cdc15) fluctuation of expression levels in CDC15
F(alpha) fluctuation of expression levels in alpha
F(diaux) fluctuation of expression levels in diauxic shift
F(spor) fluctuation of expression levels in sporulation
F(heatec) fluctuation of expression levels in heat shock (E.coli)
F(deve) fluctuation of expression levels in development (worm)
X(size) average length of fold
X(age) year of fold determined
X(pseu) pseudogene complement of the ribbon worm
X(func) total number of functions associated with the fold
X(enz) number of enzymatic functions associated with the fold
B(Ala,pdb40) composition percentage of Ala for pdb40d
B(Cys,pdb40) composition percentage of Cys for pdb40d
B(Asp,pdb40) composition percentage of Asp for pdb40d
B(Glu,pdb40) composition percentage of Glu for pdb40d
B(Phe,pdb40) composition percentage of Phe for pdb40d
B(Gly,pdb40) composition percentage of Gly for pdb40d
B(His,pdb40) composition percentage of His for pdb40d
B(Ile,pdb40) composition percentage of Ile for pdb40d
B(Lys,pdb40) composition percentage of Lys for pdb40d
B(Leu,pdb40) composition percentage of Leu for pdb40d
B(Met,pdb40) composition percentage of Met for pdb40d
B(Asn,pdb40) composition percentage of Asn for pdb40d
B(Pro,pdb40) composition percentage of Pro for pdb40d
B(Gln,pdb40) composition percentage of Gln for pdb40d
B(Arg,pdb40) composition percentage of Arg for pdb40d
B(Ser,pdb40) composition percentage of Ser for pdb40d
B(Thr,pdb40) composition percentage of Thr for pdb40d
B(Val,pdb40) composition percentage of Val for pdb40d
B(Trp,pdb40) composition percentage of Trp for pdb40d
B(Tyr,pdb40) composition percentage of Tyr for pdb40d
B(Ala,pdb100) composition percentage of Ala for pdb100d
B(Cys,pdb100) composition percentage of Cys for pdb100d
B(Asp,pdb100) composition percentage of Asp for pdb100d
B(Glu,pdb100) composition percentage of Glu for pdb100d
B(Phe,pdb100) composition percentage of Phe for pdb100d
B(Gly,pdb100) composition percentage of Gly for pdb100d
B(His,pdb100) composition percentage of His for pdb100d
B(Ile,pdb100) composition percentage of Ile for pdb100d
B(Lys,pdb100) composition percentage of Lys for pdb100d
B(Leu,pdb100) composition percentage of Leu for pdb100d
B(Met,pdb100) composition percentage of Met for pdb100d
B(Asn,pdb100) composition percentage of Asn for pdb100d
B(Pro,pdb100) composition percentage of Pro for pdb100d
B(Gln,pdb100) composition percentage of Gln for pdb100d
B(Arg,pdb100) composition percentage of Arg for pdb100d
B(Ser,pdb100) composition percentage of Ser for pdb100d
B(Thr,pdb100) composition percentage of Thr for pdb100d
B(Val,pdb100) composition percentage of Val for pdb100d
B(Trp,pdb100) composition percentage of Trp for pdb100d
B(Tyr,pdb100) composition percentage of Tyr for pdb100d
I(pdball,inter) interaction on different chains [pdb]
I(pdba,inter) interaction with alpha proteins on different chains [pdb]
I(pdbb,inter) interaction with beta proteins on different chains [pdb]
I(pdbab,inter) interaction with alpha-beta proteins on different chains [pdb]
I(pdball,intra) interaction on same chains [pdb]
I(pdba,intra) interaction with alpha proteins on same chains [pdb]
I(pdbb,intra) interaction with beta proteins on same chains [pdb]
I(pdbab,intra) interaction with alpha-beta proteins on same chains [pdb]
I(pdball,all) interaction types [pdb]
I(pdba,all) interaction with alpha proteins [pdb]
I(pdbb,all) interaction with beta proteins [pdb]
I(pdbab,all) interaction with alpha-beta proteins [pdb]
I(scerall,inter) interaction on different chains [yeast]
I(scera,inter) interaction with alpha proteins on different chains [yeast]
I(scerb,inter) interaction with beta proteins on different chains [yeast]
I(scerab,inter) interaction with alpha-beta proteins on different chains [yeast]
I(scerall,intra) interaction on same chains [yeast]
I(scera,intra) interaction with alpha proteins on same chains [yeast]
I(scerb,intra) interaction with beta proteins on same chains [yeast]
I(scerab,intra) interaction with alpha-beta proteins on same chains [yeast]
I(scerall,all) interaction types [yeast]
I(scera,all) interaction with alpha proteins [yeast]
I(scerb,all) interaction with beta proteins [yeast]
I(scerab,all) interaction with alpha-beta proteins [yeast]
J(pdball,inter) interaction on different chains [pdb]
J(pdba,inter) interaction with alpha proteins on different chains [pdb]
J(pdbb,inter) interaction with beta proteins on different chains [pdb]
J(pdbab,inter) interaction with alpha-beta proteins on different chains [pdb]
J(pdball,intra) interaction on same chains [pdb]
J(pdba,intra) interaction with alpha proteins on same chains [pdb]
J(pdbb,intra) interaction with beta proteins on same chains [pdb]
J(pdbab,intra) interaction with alpha-beta proteins on same chains [pdb]
J(pdball,all) interaction types [pdb]
J(pdba,all) interaction with alpha proteins [pdb]
J(pdbb,all) interaction with beta proteins [pdb]
J(pdbab,all) interaction with alpha-beta proteins [pdb]
J(scerall,inter) interaction on different chains [yeast]
J(scera,inter) interaction with alpha proteins on different chains [yeast]
J(scerb,inter) interaction with beta proteins on different chains [yeast]
J(scerab,inter) interaction with alpha-beta proteins on different chains [yeast]
J(scerall,intra) interaction on same chains [yeast]
J(scera,intra) interaction with alpha proteins on same chains [yeast]
J(scerb,intra) interaction with beta proteins on same chains [yeast]
J(scerab,intra) interaction with alpha-beta proteins on same chains [yeast]
J(scerall,all) interaction types [yeast]
J(scera,all) interaction with alpha proteins [yeast]
J(scerb,all) interaction with beta proteins [yeast]
J(scerab,all) interaction with alpha-beta proteins [yeast]
A(maxcadev,auto) maximal Ca atom displacement between structures[Ave.]
A(rmsoverall,auto) overall RMS between structures [Ave.]
A(nhinges,auto) number of putative hinges found in fold [Ave.]
A(kappa,auto) degree of rotation angle about hinge [Ave.]
A(deltae,auto) energy difference between start and end states [Ave.]
A(transe,auto) maximum energy difference [Ave.]
A(nresidue,auto) number of residues [Ave.]
M(maxcadev,auto) maximal Ca atom displacement between structures[Max.]
M(rmsoverall,auto) overall RMS between structures [Max.]
M(nhinges,auto) number of putative hinges found in fold [Max.]
M(kappa,auto) degree of rotation angle about hinge [Max.]
M(deltae,auto) energy difference between start and end states [Max.]
M(transe,auto) maximum energy difference [Max.]
M(nresidue,auto) number of residues [Max.]
A(maxcadev,gold) maximal Ca atom displacement between structures[Ave.]
A(rmsoverall,gold) overall RMS between structures [Ave.]
A(nhinges,gold) number of putative hinges found in fold [Ave.]
A(kappa,gold) degree of rotation angle about hinge [Ave.]
A(deltae,gold) energy difference between start and end states [Ave.]
A(transe,gold) maximum energy difference [Ave.]
A(nresidue,gold) number of residues [Ave.]
M(maxcadev,gold) maximal Ca atom displacement between structures[Max.]
M(rmsoverall,gold) overall RMS between structures [Max.]
M(nhinges,gold) number of putative hinges found in fold [Max.]
M(kappa,gold) degree of rotation angle about hinge [Max.]
M(deltae,gold) energy difference between start and end states [Max.]
M(transe,gold) maximum energy difference [Max.]
M(nresidue,gold) number of residues [Max.]
T(9NaCl) sensitivity of transposon at condition 9NaCl
T(HHIG) sensitivity of transposon at condition HHIG
T(CyhR) sensitivity of transposon at condition CyhR
T(67Calc) sensitivity of transposon at condition 67Calc
T(YPD11C) sensitivity of transposon at condition YPD11C
T(75mMHU) sensitivity of transposon at condition 75mMHU
T(01MMS) sensitivity of transposon at condition 01MMS
T(2EGTA) sensitivity of transposon at condition 2EGTA
T(YPD37C) sensitivity of transposon at condition YPD37C
T(20Ben) sensitivity of transposon at condition 20Ben
T(MethBl) sensitivity of transposon at condition MethBl
T(BCIP) sensitivity of transposon at condition BCIP
T(10Ben) sensitivity of transposon at condition 10Ben
T(003SDS) sensitivity of transposon at condition 003SDS
T(46Hygr) sensitivity of transposon at condition 46Hygr
T(12Calc) sensitivity of transposon at condition 12Calc
T(YPGly) sensitivity of transposon at condition YPGly
T(CyhS) sensitivity of transposon at condition CyhS
T(8Caff) sensitivity of transposon at condition 8Caff
O(mode) Mode Concentration
Use SCOP Fold Superfamily as level of structural similarity